Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008043

Physical Location & Seq

Genomic Coordinates Reverse (-)

6670970 .. 6672491

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTTCCCTTCTTACCCCAACCCCAACCGTTACACTCCAACACAAGAAAGATCATTTCAGGCTCAACACAAACCCATCATCCAGAATTTCCCAGAAAAATTTTGGGCGCCATGGGGTTTGTTTTGTAACAAAAGCGAAGGTTGGAGGAGATGTACTTGAGAAACAATCAGTTAGCGCTGAGGACAAGAAGGATTATGGACTACTTAGTCTCCACCGTGTTGGAATCTTGTGTCAAAACTTGGAGAGGTCGCTCGACTTTTATCAGAACATTCTTGGTCTTGAAATAAATGAGGCTAGGCCAGATGACAAACTCCCCTATAGGGGGGCTTGGTTATGGCTTCCCAATCCTGACCCTCTAACTGGAAGACCAGAGCATGGAGGCCGTGATAGGCACACTTGTGTTGAGATTCGGGATGTGTCTAAGCTGAAAGCAATCCTTGATGAAGCTGGTATTCCATACACACTTATTACACCCGTAATGTTACATTGTAATATTGATAATGCCTTCAGGGGCTCCATTATGGTCAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

8.93

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57040
fragaria_vesca	FvH4_1g07980
malus_domestica	MD02G1084200.v1.1 MD15G1211500.v1.1
prunus_persica	Prupe.7G205300_v2.0.a1 Prupe.7G205300_v2.0.a1
pyrus_communis	pycom02g06700 pycom15g18810
rosa_chinensis	RchiOBHm_Chr2g0093891 RchiOBHm_Chr2g0094011
rosa_laevigata	RLG00000001330 RLG00000016443 RLG00000016445
rosa_multiflora	Rmu_sc0003027.1_g000004 Rmu_sc0017523.1_g000017
rosa_roxburghii	Rroxscaffold_2G00147560
rosa_rugosa	Rorug02G0040300
rosa_samantha	Rh2AG087000 Rh2BG087800 Rh2CG090100 Rh2DG085700 Rh2DG086900 Rh7AG429100 Rh7CG447900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	87, 100
AcuI	CTGAAG	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	156
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 362, 377
AgsI	TTSAA	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	427, 449
AluI	AGCT	2 cut(s)	427, 449
Alw26I	GTCTC	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	299, 382
ApoI	RAATTY	2 cut(s)	87, 100
AspLEI	GCGC	2 cut(s)	111, 179
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	2 cut(s)	112, 180
BmiI	GGNNCC	2 cut(s)	110, 517
BpiI	GAAGAC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 195, 225
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 362, 377
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	80, 421
BseLI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 362, 377
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	301, 384
BshNI	GGYRCC	1 cut(s)	108
BslI	CCNNNNNNNGG	5 cut(s)	322, 323, 324, 362, 377
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	301, 384
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	2 cut(s)	301, 384
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	110, 517
BspT107I	GGYRCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	31, 218
BstACI	GRCGYC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	180, 206, 423
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	80, 421
BstH2I	RGCGCY	2 cut(s)	112, 180
BstHHI	GCGC	2 cut(s)	111, 179
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	301, 384
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	80, 421
CfoI	GCGC	2 cut(s)	111, 179
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	113, 377
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	180, 206, 423
DinI	GGCGCC	1 cut(s)	110
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	518
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	518
EgeI	GGCGCC	1 cut(s)	110
EheI	GGCGCC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	116, 380
FaiI	YATR	7 cut(s)	114, 198, 321, 337, 378, 460, 524
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	2 cut(s)	112, 376
FokI	GGATG	2 cut(s)	67, 428
FriOI	GRGCYC	1 cut(s)	518
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	110, 178
HaeII	RGCGCY	2 cut(s)	112, 180
HaeIII	GGCC	2 cut(s)	301, 384
HhaI	GCGC	2 cut(s)	111, 179
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	116, 380
Hin6I	GCGC	2 cut(s)	109, 177
HinP1I	GCGC	2 cut(s)	109, 177
HinfI	GANTC	2 cut(s)	225, 409
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	4 cut(s)	84, 281, 350, 413
HpyAV	CCTTC	4 cut(s)	20, 133, 184, 517
HpyCH4III	ACNGT	2 cut(s)	31, 218
HpyF3I	CTNAG	3 cut(s)	180, 206, 423
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	116, 380
HspAI	GCGC	2 cut(s)	109, 177
KasI	GGCGCC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	31, 127, 483
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	2 cut(s)	87, 100
Mly113I	GGCGCC	1 cut(s)	109
MmeI	TCCRAC	3 cut(s)	64, 124, 202
MnlI	CCTC	6 cut(s)	140, 175, 240, 286, 366, 374
MslI	CAYNNNNRTG	1 cut(s)	399
NarI	GGCGCC	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	116, 380
NlaIV	GGNNCC	2 cut(s)	110, 517
OliI	CACNNNNGTG	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	225, 409
PflMI	CCANNNNNTGG	1 cut(s)	377
PluTI	GGCGCC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	110, 517
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	4 cut(s)	144, 251, 429, 451
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	87, 100
SspDI	GGCGCC	1 cut(s)	108
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	31, 218
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	87, 100
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	225, 409
TspDTI	ATGAA	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	87, 100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.