Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

16621208 .. 16622582

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGACCAATATGACTTCAGGCTACGTTGGTCTTATGGGGAAGTAATACATGGATACTCGATGAAATCGGATTTAGTATATTTGGTCTTCGTGGGCAGTGCGCTTCTTGACATGTATATGAAGATTGGTAAGATTAAGAAAAAATACAGGCTTTTTGACGAAATGCCGATAAGAAATGTGGTGTCTAGGACCACTGTTATAACTGGCTTGTTCGTGTTGAAGGTGCGGTATGACGCATATGTGTTTGCTATCTTGTTGAAGGCGTGTGCTGATTTGGGTGCTTTGCAATATGGGAGAGCAATTCACACGCAAACAATGAAGAATGGGTTCGATGAGAGCTCAATGTGGCAAACTCTCTTGCCACCATGTACAACAAATGTGGAAGCCGGTGTGAGTCCTAATGAATACACTTTTGCAGGCGTCATCTCTAGAGTTGTCAATCTTGTTAGAGTTGAATGGGGTGAACAATTGCATGCCCACGTTTTACACAGGGGTCTTATCTCTTTGTTGTCGGTGGGAAATTCCATTGTAACCATGTATGCCAAGTGTGGGCGTTTGGCTTCAGGTTCTAAGGTGTTTCATAAGATGAGCAGGAGAGATATTGTTTCATGGAGCACTTTAATTGCCGGGTATTCTCAAGGAGGTTACGGTGAAGAAGCTTTTCAGTTTTTGTTGTGGATCAGAAGGGACGGACCAAAACCAAACGAGTTTGCTCTTGCTAGTAGTATAAAAGAAGCTGCAAAGATCTTTGATGTGACAGAACTTAGTGATATTATTTCATGGACGGCGATGATTAATGGATATGCTGAACATGGGTTCTACCGAGAAGCCATTGATCTGTCTGAGAAGATTCCTAGGGGTTACGTGAGGCAGAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

294

Amino Acids

33.23

Weight (kDa)

9.18

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	199 - 238	5.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	220, 259, 455
AluBI	AGCT	3 cut(s)	339, 659, 737
AluI	AGCT	3 cut(s)	339, 659, 737
Alw21I	GWGCWC	2 cut(s)	341, 617
AlwI	GGATC	1 cut(s)	686
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	520
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	2 cut(s)	326, 660
AspA2I	CCTAGG	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	4, 189, 692
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	473, 662
AvaII	GGWCC	3 cut(s)	4, 189, 692
AvrII	CCTAGG	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	341, 617
BbvI	GCAGC	1 cut(s)	724
BceAI	ACGGC	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	628
BfaI	CTAG	4 cut(s)	186, 429, 720, 855
BfuI	GTATCC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	1 cut(s)	738
BlnI	CCTAGG	1 cut(s)	854
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	3 cut(s)	4, 189, 692
BmgT120I	GGNCC	3 cut(s)	4, 189, 692
BmrFI	CCNGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	865
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	854
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	724
BsiHKAI	GWGCWC	2 cut(s)	341, 617
BsiSI	CCGG	2 cut(s)	387, 627
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	341, 617
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	678, 744, 835
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	835
BspPI	GGATC	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	3 cut(s)	678, 744, 835
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	854
Bst4CI	ACNGT	2 cut(s)	196, 650
BstACI	GRCGYC	1 cut(s)	420
BstAUI	TGTACA	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	865
BstC8I	GCNNGC	2 cut(s)	418, 474
BstDEI	CTNAG	3 cut(s)	570, 764, 843
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	681, 747, 838
BstMBI	GATC	3 cut(s)	678, 744, 835
BstNSI	RCATGY	2 cut(s)	115, 476
BstSCI	CCNGG	1 cut(s)	626
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	803
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 192
Cac8I	GCNNGC	2 cut(s)	418, 474
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	4, 189, 692
CseI	GACGC	2 cut(s)	242, 409
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	9 cut(s)	50, 112, 366, 473, 535, 609, 780, 812, 879
CviJI	RGCY	9 cut(s)	22, 151, 207, 339, 386, 560, 659, 737, 830
CviKI_1	RGCY	9 cut(s)	22, 151, 207, 339, 386, 560, 659, 737, 830
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	570, 764, 843
DpnI	GATC	3 cut(s)	680, 746, 837
DpnII	GATC	3 cut(s)	678, 744, 835
Ecl136II	GAGCTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	3 cut(s)	4, 189, 692
Eco53kI	GAGCTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	854
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	9 cut(s)	53, 115, 369, 476, 538, 612, 783, 815, 882
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	9 cut(s)	49, 111, 365, 472, 534, 608, 779, 811, 878
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	738
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	4 cut(s)	186, 429, 720, 855
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	738
HapII	CCGG	2 cut(s)	387, 627
HgaI	GACGC	2 cut(s)	242, 409
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	9 cut(s)	53, 115, 369, 476, 538, 612, 783, 815, 882
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	2 cut(s)	394, 850
HpaII	CCGG	2 cut(s)	387, 627
HphI	GGTGA	2 cut(s)	473, 662
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	3 cut(s)	70, 683, 844
Hpy188III	TCNNGA	2 cut(s)	107, 429
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	214, 253, 678
HpyCH4III	ACNGT	2 cut(s)	196, 650
HpyCH4IV	ACGT	3 cut(s)	25, 480, 864
HpyCH4V	TGCA	4 cut(s)	286, 416, 472, 740
HpyF3I	CTNAG	3 cut(s)	570, 764, 843
HpySE526I	ACGT	3 cut(s)	25, 480, 864
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	9 cut(s)	53, 115, 369, 476, 538, 612, 783, 815, 882
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	678, 744, 835
LmnI	GCTCC	1 cut(s)	612
LpnPI	CCDG	9 cut(s)	4, 133, 189, 400, 402, 475, 549, 577, 640
Lsp1109I	GCAGC	1 cut(s)	724
MaeI	CTAG	4 cut(s)	186, 429, 720, 855
MaeII	ACGT	3 cut(s)	25, 480, 864
MaeIII	GTNAC	4 cut(s)	529, 644, 754, 860
MalI	GATC	3 cut(s)	680, 746, 837
MboI	GATC	3 cut(s)	678, 744, 835
MboII	GAAGA	5 cut(s)	79, 133, 331, 665, 859
MfeI	CAATTG	1 cut(s)	467
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	341, 617
MluCI	AATT	4 cut(s)	300, 467, 520, 621
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	635, 861, 867
MroXI	GAANNNNTTC	2 cut(s)	326, 660
MseI	TTAA	3 cut(s)	135, 620, 795
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	2 cut(s)	387, 627
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	467
NciI	CCSGG	1 cut(s)	628
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	3 cut(s)	678, 744, 835
NlaIII	CATG	9 cut(s)	53, 115, 369, 476, 538, 612, 783, 815, 882
NmuCI	GTSAC	1 cut(s)	754
NspI	RCATGY	2 cut(s)	115, 476
PaeI	GCATGC	1 cut(s)	476
PciI	ACATGT	1 cut(s)	111
PdmI	GAANNNNTTC	2 cut(s)	326, 660
PfeI	GAWTC	1 cut(s)	850
PkrI	GCNGC	1 cut(s)	739
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Ppu21I	YACGTR	1 cut(s)	865
PscI	ACATGT	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	4, 189, 692
PsuI	RGATCY	1 cut(s)	744
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	135, 620, 795
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	3 cut(s)	678, 744, 835
Sau96I	GGNCC	3 cut(s)	4, 189, 692
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	2 cut(s)	341, 617
SinI	GGWCC	3 cut(s)	4, 189, 692
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	4 cut(s)	300, 467, 520, 621
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	4 cut(s)	186, 429, 720, 855
SstI	GAGCTC	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	2 cut(s)	196, 650
TaiI	ACGT	3 cut(s)	28, 483, 867
TaqI	TCGA	2 cut(s)	59, 330
TasI	AATT	4 cut(s)	300, 467, 520, 621
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	3 cut(s)	135, 620, 795
Tru9I	TTAA	3 cut(s)	135, 620, 795
TscAI	CASTG	2 cut(s)	103, 199
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	7 cut(s)	77, 134, 332, 417, 569, 597, 768
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	103, 199
VpaK11BI	GGWCC	3 cut(s)	4, 189, 692
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	1 cut(s)	520
XbaI	TCTAGA	1 cut(s)	428
XceI	RCATGY	2 cut(s)	115, 476
XmaJI	CCTAGG	1 cut(s)	854
XmnI	GAANNNNTTC	2 cut(s)	326, 660
XspI	CTAG	4 cut(s)	186, 429, 720, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.