Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

18890610 .. 18892390

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTGTTATCTTCCCCCACGTCTTACACTCCTCCGCTTTCCCTCGCCTTCCTCTTCCTCCCTTGTCTTCTCCACTTCTCTCCCCGTCCTGCATCCGCGCCTCCTCCGCATCAGCATCATCTCCCATGGACCCGCACAGCCAACGGAGCAAAACAAAGTTCATAGACTTCCCCTACGTGTCGGCCCCACACAGGAACCTCATGGTCGATCTTGTATTGACGTTAGAGACGCGCCTTGGCTCGCAGCTCTTGCCTTGTACTCTCCCTCCCGACGTGCAGTACTACCAGAACGAGAGTGGCACCAACCATGCATCCCTCCACATCAGATCGGGCCAATCCTCCGCCCCTGTTGATTTCATATTAGGAAGTTGGCTGCACTGTGAGCTACCAACAGGTGGAGCACTGAACATTACAAGTCTGTCATCCTATCTCAATCCAACCACAGATGCACCAAATTTCCTACTTGAGCTCATCCAGAGCAGCCCAACATCCCTAGTCCTCATCCTTGACCTTCCTCCAAGAAAAGACCTAGTTCTCCACCCTGACTACCTCCAAACATTTTATCAAGACACCCAATTGGACACACCCAGGCAAAAGCTTGAGAAACTTGCTGAGGTTAAACCCTACTTCTCTTCATCGTTATACATCCGAAGCGTAGTGTCTCCAACTGCAATTTTGGTTCGGATCGAAGCAGGGAGTGGCGGGGAGGGAAAAGGCTTGGAGGACATTATAGAAAATGATGTGAGTCCCATTGCAAAGGAGGTGCTGAGAATCTGGTTGGATCAATGTGCTTGTGGGGAGAGAGAAGTGGGAGAAGATGAGAGGGAATATTTGAAGAGGAGGGATGATTTGATCAAGAGGAAGACTATTGAGATAGATTTGGGGTCTAATTTTCCAAGATTATTTGGGGCTGATGCTGCAGATAGAGTATTGGGTGCCATTAGAGAAGTTTATAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

321

Amino Acids

35.42

Weight (kDa)

5.65

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	63 - 316	1e-123	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AccB1I	GGYRCC	2 cut(s)	299, 935
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccII	CGCG	2 cut(s)	99, 232
AciI	CCGC	6 cut(s)	36, 97, 108, 134, 342, 702
AclWI	GGATC	2 cut(s)	692, 789
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	2 cut(s)	259, 281
AfiI	CCNNNNNNNGG	2 cut(s)	192, 395
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	835
AjiI	CACGTC	2 cut(s)	22, 274
AjnI	CCWGG	1 cut(s)	587
AluBI	AGCT	4 cut(s)	247, 385, 469, 598
AluI	AGCT	4 cut(s)	247, 385, 469, 598
Alw21I	GWGCWC	2 cut(s)	403, 471
Alw26I	GTCTC	2 cut(s)	221, 666
AlwI	GGATC	2 cut(s)	692, 789
AoxI	GGCC	2 cut(s)	183, 331
ApeKI	GCWGC	4 cut(s)	244, 373, 480, 917
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	101, 234
AspS9I	GGNCC	3 cut(s)	130, 184, 331
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	299, 935
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	60, 869
Bbv12I	GWGCWC	2 cut(s)	403, 471
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	256, 360, 492, 904
BciT130I	CCWGG	1 cut(s)	589
BclI	TGATCA	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	221, 666
BfaI	CTAG	2 cut(s)	494, 530
BfmI	CTRYAG	1 cut(s)	918
BisI	GCNGC	4 cut(s)	245, 374, 481, 918
BlsI	GCNGC	4 cut(s)	246, 375, 482, 919
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	589
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	2 cut(s)	22, 274
BmgT120I	GGNCC	3 cut(s)	130, 184, 331
BmiI	GGNNCC	5 cut(s)	132, 186, 197, 301, 937
BmrFI	CCNGG	1 cut(s)	589
BmsI	GCATC	6 cut(s)	102, 119, 125, 320, 436, 904
BpiI	GAAGAC	2 cut(s)	60, 869
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	485, 620
BsaAI	YACGTR	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	126, 235, 587
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 395
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	589
BseDI	CCNNGG	3 cut(s)	126, 235, 587
BseGI	GGATG	8 cut(s)	93, 311, 422, 471, 488, 501, 645, 850
BseLI	CCNNNNNNNGG	2 cut(s)	192, 395
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	2 cut(s)	603, 758
BseRI	GAGGAG	3 cut(s)	22, 94, 853
BseXI	GCAGC	4 cut(s)	256, 360, 492, 904
BsgI	GTGCAG	2 cut(s)	296, 359
Bsh1236I	CGCG	2 cut(s)	99, 232
BshFI	GGCC	2 cut(s)	185, 333
BshNI	GGYRCC	2 cut(s)	299, 935
BsiHKAI	GWGCWC	2 cut(s)	403, 471
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	192, 395
BsmAI	GTCTC	2 cut(s)	221, 666
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	185, 333
Bsp1286I	GDGCHC	2 cut(s)	403, 471
Bsp143I	GATC	5 cut(s)	208, 326, 684, 781, 852
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	6 cut(s)	36, 97, 108, 134, 342, 702
BspANI	GGCC	2 cut(s)	185, 333
BspCNI	CTCAG	2 cut(s)	604, 759
BspFNI	CGCG	2 cut(s)	99, 232
BspLI	GGNNCC	5 cut(s)	132, 186, 197, 301, 937
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	2 cut(s)	692, 789
BspT107I	GGYRCC	2 cut(s)	299, 935
BsrDI	GCAATG	1 cut(s)	750
BssECI	CCNNGG	3 cut(s)	126, 235, 587
BssMI	GATC	5 cut(s)	208, 326, 684, 781, 852
BssT1I	CCWWGG	2 cut(s)	126, 235
Bst2UI	CCWGG	1 cut(s)	589
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	60, 637, 830
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	612, 767
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	8 cut(s)	93, 311, 422, 471, 488, 501, 645, 850
BstFNI	CGCG	2 cut(s)	99, 232
BstHHI	GCGC	2 cut(s)	101, 234
BstKTI	GATC	5 cut(s)	211, 329, 687, 784, 855
BstMAI	GTCTC	2 cut(s)	221, 666
BstMBI	GATC	5 cut(s)	208, 326, 684, 781, 852
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 147, 250, 382, 917
BstNI	CCWGG	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	587
BstSFI	CTRYAG	1 cut(s)	918
BstUI	CGCG	2 cut(s)	99, 232
BstV1I	GCAGC	4 cut(s)	256, 360, 492, 904
BstV2I	GAAGAC	2 cut(s)	60, 869
BsuRI	GGCC	2 cut(s)	185, 333
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	2 cut(s)	22, 274
BtsCI	GGATG	8 cut(s)	93, 311, 422, 471, 488, 501, 645, 850
BtsIMutI	CAGTG	2 cut(s)	376, 401
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	2 cut(s)	101, 234
Cfr13I	GGNCC	3 cut(s)	130, 184, 331
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	258, 280
CviAII	CATG	3 cut(s)	127, 202, 308
CviQI	GTAC	2 cut(s)	258, 280
DdeI	CTNAG	2 cut(s)	612, 767
DpnI	GATC	5 cut(s)	210, 328, 686, 783, 854
DpnII	GATC	5 cut(s)	208, 326, 684, 781, 852
Eam1104I	CTCTTC	3 cut(s)	60, 637, 830
EarI	CTCTTC	3 cut(s)	60, 637, 830
EciI	GGCGGA	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	126, 235
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	126, 235
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	126, 235
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	3 cut(s)	130, 205, 311
FaiI	YATR	9 cut(s)	128, 164, 203, 309, 359, 643, 731, 954, 961
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	3 cut(s)	126, 201, 307
FauI	CCCGC	2 cut(s)	141, 695
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	245, 374, 481, 918
FokI	GGATG	8 cut(s)	80, 298, 409, 458, 475, 488, 632, 857
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	4 cut(s)	245, 374, 481, 918
FspBI	CTAG	2 cut(s)	494, 530
GlaI	GCGC	2 cut(s)	100, 233
GluI	GCNGC	4 cut(s)	245, 374, 481, 918
HaeIII	GGCC	2 cut(s)	185, 333
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	101, 234
Hin1II	CATG	3 cut(s)	130, 205, 311
Hin6I	GCGC	2 cut(s)	99, 232
HinP1I	GCGC	2 cut(s)	99, 232
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	745, 771
Hpy188I	TCNGA	3 cut(s)	326, 650, 684
Hpy188III	TCNNGA	4 cut(s)	269, 475, 566, 856
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	59, 521
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	4 cut(s)	21, 177, 221, 273
HpyCH4V	TGCA	8 cut(s)	93, 277, 311, 376, 449, 671, 755, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 147, 250, 382, 917
HpyF3I	CTNAG	2 cut(s)	612, 767
HpySE526I	ACGT	4 cut(s)	21, 177, 221, 273
Hsp92II	CATG	3 cut(s)	130, 205, 311
HspAI	GCGC	2 cut(s)	99, 232
Ksp22I	TGATCA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	208, 326, 684, 781, 852
LmnI	GCTCC	2 cut(s)	147, 398
Lsp1109I	GCAGC	4 cut(s)	256, 360, 492, 904
LweI	GCATC	6 cut(s)	102, 119, 125, 320, 436, 904
MaeI	CTAG	2 cut(s)	494, 530
MaeII	ACGT	4 cut(s)	21, 177, 221, 273
MalI	GATC	5 cut(s)	210, 328, 686, 783, 854
MboI	GATC	5 cut(s)	208, 326, 684, 781, 852
MboII	GAAGA	7 cut(s)	4, 47, 60, 624, 827, 847, 874
MfeI	CAATTG	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	403, 471
MluCI	AATT	4 cut(s)	454, 575, 672, 889
MlyI	GAGTC	1 cut(s)	754
MmeI	TCCRAC	3 cut(s)	461, 689, 759
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	1 cut(s)	618
MspR9I	CCNGG	1 cut(s)	589
MunI	CAATTG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	589
MvnI	CGCG	2 cut(s)	99, 232
MwoI	GCNNNNNNNGC	5 cut(s)	107, 147, 250, 382, 917
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	5 cut(s)	208, 326, 684, 781, 852
NlaIII	CATG	3 cut(s)	130, 205, 311
NlaIV	GGNNCC	5 cut(s)	132, 186, 197, 301, 937
NsiI	ATGCAT	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	771
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	246, 375, 482, 919
PleI	GAGTC	1 cut(s)	753
PpsI	GAGTC	1 cut(s)	753
Ppu21I	YACGTR	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	954
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	587
PspN4I	GGNNCC	5 cut(s)	132, 186, 197, 301, 937
PspPI	GGNCC	3 cut(s)	130, 184, 331
PstI	CTGCAG	1 cut(s)	922
RsaI	GTAC	2 cut(s)	259, 281
RsaNI	GTAC	2 cut(s)	258, 280
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	4 cut(s)	245, 374, 481, 918
Sau3AI	GATC	5 cut(s)	208, 326, 684, 781, 852
Sau96I	GGNCC	3 cut(s)	130, 184, 331
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	403, 471
SfaNI	GCATC	6 cut(s)	102, 119, 125, 320, 436, 904
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	464, 599
SmoI	CTYRAG	2 cut(s)	464, 599
Sse9I	AATT	4 cut(s)	454, 575, 672, 889
SsiI	CCGC	6 cut(s)	36, 97, 108, 134, 342, 702
SspI	AATATT	1 cut(s)	830
SspMI	CTAG	2 cut(s)	494, 530
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	2 cut(s)	126, 235
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	4 cut(s)	24, 180, 224, 276
TaqI	TCGA	2 cut(s)	207, 687
TasI	AATT	4 cut(s)	454, 575, 672, 889
TatI	WGTACW	2 cut(s)	257, 279
TfiI	GAWTC	1 cut(s)	771
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	383, 408
TseI	GCWGC	4 cut(s)	244, 373, 480, 917
TspDTI	ATGAA	3 cut(s)	151, 346, 624
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	383, 408
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XspI	CTAG	2 cut(s)	494, 530
ZrmI	AGTACT	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.