Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

21611672 .. 21612921

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTTTTGATGATCATGCTTGTAACACAGGCCTTGTATTAGGCTTATGTCTCACATCGTCTGCTTCTCAGGAGAGTTCTAACCCTACAAAGTTTGCAAAGAATAATATTAAGCCTTCCCTAAATTCTGCTCCAACAAGTGGTGATTTTGAGCCATCTTTAACTTTAGGTCTTTTTGGTGAGCCGTATCATCAACAAATGGTAGCCTCCAATATTTACAAGGTTGGTAATTCTTCTCAGGAGGAAACAGTTGATTTGTACAGGCAAGCTGCAGCAGCGTCCTCTCCTCACAGTCATAGCGCAGTCTCTAACTCCTTCTCTAGTGGTAGAGTCGTCAAGAGGGAGAGAGACATCAGCAGTGAAGAGGTTGAGGTCGATGAGAAAGTCTCCTCAAGAGTGAGTGATGAAGATGAAGACGGTTCTAATCCTAGAAAGAAGCTTAGGCTCACCAAGGAACAATCTGCTCTCTTAGAGGAAAGCTTCAAACAACATAGCACTCTAAATCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAACTTGAGGCCAAGACAAGTGGAAGTATGGTTCCAAAATAGGAGAGCCAGGACAAAGCTTAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAGAAGTGCTGTGAAACACTAACAGATGAGAACAGGAGGCTACAAAAAGAGCTGATAGAACTCAAGGCACTGAAATTAAGCCAACCTTTGTACATGCACATGCCAGCAGCCACCCTCACTATGTGTCCATCTTGTGAAAGAATCGGAGGTGTGGGTAGCGAGGGATCATCCAAGAGCCCATTTTCTATGGCTCCAAAACCTCACTTTTACAATCACTTTACCAATCCCTCAGCAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

290

Amino Acids

32.1

Weight (kDa)

8.07

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	144 - 198	3.9e-16	Homeodomain
HALZ	PF02183	200 - 234	8.8e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	612
AclWI	GGATC	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	124
AdeI	CACNNNGTG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	260, 719
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	484, 628
AjnI	CCWGG	2 cut(s)	527, 584
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	7 cut(s)	269, 439, 480, 521, 595, 679, 863
AluI	AGCT	7 cut(s)	269, 439, 480, 521, 595, 679, 863
Alw26I	GTCTC	4 cut(s)	56, 310, 342, 391
AlwI	GGATC	1 cut(s)	799
AoxI	GGCC	2 cut(s)	31, 545
ApeKI	GCWGC	5 cut(s)	269, 272, 275, 734, 860
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	155, 191, 439
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	856
BbvI	GCAGC	4 cut(s)	256, 284, 287, 746
BccI	CCATC	2 cut(s)	163, 763
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	529, 586
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	4 cut(s)	56, 310, 342, 391
BfaI	CTAG	2 cut(s)	321, 429
BfmI	CTRYAG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	5 cut(s)	270, 273, 276, 735, 861
BlsI	GCNGC	5 cut(s)	271, 274, 277, 736, 862
Bme1390I	CCNGG	2 cut(s)	529, 586
BmiI	GGNNCC	2 cut(s)	569, 819
BmrFI	CCNGG	2 cut(s)	529, 586
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu10I	CCTNAGC	3 cut(s)	440, 507, 856
BpuEI	CTTGAG	3 cut(s)	376, 562, 674
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	529, 586
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	794
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	4 cut(s)	83, 251, 597, 870
BseRI	GAGGAG	2 cut(s)	276, 379
BseXI	GCAGC	4 cut(s)	256, 284, 287, 746
BshFI	GGCC	2 cut(s)	33, 547
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	4 cut(s)	56, 310, 342, 391
BsnI	GGCC	2 cut(s)	33, 547
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp1407I	TGTACA	2 cut(s)	258, 717
Bsp143I	GATC	2 cut(s)	13, 791
BspANI	GGCC	2 cut(s)	33, 547
BspCNI	CTCAG	4 cut(s)	82, 250, 598, 869
BspLI	GGNNCC	2 cut(s)	569, 819
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	799
BspTI	CTTAAG	1 cut(s)	596
BsrGI	TGTACA	2 cut(s)	258, 717
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	2 cut(s)	13, 791
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	529, 586
Bst4CI	ACNGT	4 cut(s)	250, 293, 419, 617
Bst6I	CTCTTC	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	596
BstAUI	TGTACA	2 cut(s)	258, 717
BstC8I	GCNNGC	3 cut(s)	267, 519, 732
BstDEI	CTNAG	7 cut(s)	69, 237, 440, 469, 507, 606, 856
BstF5I	GGATG	1 cut(s)	794
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	16, 794
BstMAI	GTCTC	4 cut(s)	56, 310, 342, 391
BstMBI	GATC	2 cut(s)	13, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	2 cut(s)	529, 586
BstNSI	RCATGY	2 cut(s)	724, 730
BstSCI	CCNGG	2 cut(s)	527, 584
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	256, 284, 287, 746
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	33, 547
BtsCI	GGATG	1 cut(s)	794
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	364, 695
Cac8I	GCNNGC	3 cut(s)	267, 519, 732
CfoI	GCGC	1 cut(s)	302
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	259, 718
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	3 cut(s)	17, 721, 727
CviQI	GTAC	2 cut(s)	259, 718
DdeI	CTNAG	7 cut(s)	69, 237, 440, 469, 507, 606, 856
DpnI	GATC	2 cut(s)	15, 793
DpnII	GATC	2 cut(s)	13, 791
DraIII	CACNNNGTG	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	527, 584
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	806
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	3 cut(s)	20, 724, 730
FaiI	YATR	9 cut(s)	18, 49, 297, 492, 565, 722, 728, 749, 815
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FatI	CATG	3 cut(s)	16, 720, 726
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	5 cut(s)	270, 273, 276, 735, 861
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	5 cut(s)	270, 273, 276, 735, 861
FspBI	CTAG	2 cut(s)	321, 429
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	5 cut(s)	270, 273, 276, 735, 861
HaeIII	GGCC	2 cut(s)	33, 547
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	20, 724, 730
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	4 cut(s)	437, 478, 519, 593
HinfI	GANTC	2 cut(s)	330, 768
HphI	GGTGA	3 cut(s)	155, 191, 439
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	1 cut(s)	773
Hpy188III	TCNNGA	5 cut(s)	71, 239, 337, 393, 625
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	126, 325
HpyCH4III	ACNGT	4 cut(s)	250, 293, 419, 617
HpyCH4V	TGCA	3 cut(s)	98, 272, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	7 cut(s)	69, 237, 440, 469, 507, 606, 856
Hsp92II	CATG	3 cut(s)	20, 724, 730
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 791
LmnI	GCTCC	2 cut(s)	136, 823
Lsp1109I	GCAGC	4 cut(s)	256, 284, 287, 746
MaeI	CTAG	2 cut(s)	321, 429
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	15, 793
MboI	GATC	2 cut(s)	13, 791
MboII	GAAGA	5 cut(s)	225, 374, 419, 425, 640
MhlI	GDGCHC	1 cut(s)	806
MluCI	AATT	3 cut(s)	124, 229, 701
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	5 cut(s)	111, 161, 536, 597, 704
MslI	CAYNNNNRTG	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	596
MspR9I	CCNGG	2 cut(s)	529, 586
MvaI	CCWGG	2 cut(s)	529, 586
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	13, 791
NlaIII	CATG	3 cut(s)	20, 724, 730
NlaIV	GGNNCC	2 cut(s)	569, 819
NspI	RCATGY	2 cut(s)	724, 730
PceI	AGGCCT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	271, 274, 277, 736, 862
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	527, 584
PspGI	CCWGG	2 cut(s)	527, 584
PspN4I	GGNNCC	2 cut(s)	569, 819
PstI	CTGCAG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	260, 719
RsaNI	GTAC	2 cut(s)	259, 718
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	5 cut(s)	111, 161, 536, 597, 704
SatI	GCNGC	5 cut(s)	270, 273, 276, 735, 861
Sau3AI	GATC	2 cut(s)	13, 791
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	529, 586
SduI	GDGCHC	1 cut(s)	806
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	4 cut(s)	391, 541, 596, 689
SmoI	CTYRAG	4 cut(s)	391, 541, 596, 689
Sse9I	AATT	3 cut(s)	124, 229, 701
SseBI	AGGCCT	1 cut(s)	33
SspI	AATATT	2 cut(s)	109, 214
SspMI	CTAG	2 cut(s)	321, 429
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	527, 584
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	250, 293, 419, 617
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	124, 229, 701
TatI	WGTACW	2 cut(s)	258, 717
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	5 cut(s)	111, 161, 536, 597, 704
Tru9I	TTAA	5 cut(s)	111, 161, 536, 597, 704
TscAI	CASTG	2 cut(s)	364, 702
TseI	GCWGC	5 cut(s)	269, 272, 275, 734, 860
TspDTI	ATGAA	2 cut(s)	420, 426
TspRI	CASTG	2 cut(s)	364, 702
Van91I	CCANNNNNTGG	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	2 cut(s)	724, 730
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	321, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.