Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Reverse (-)

23663306 .. 23664692

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAAGTGTATGGTGGTGGTCAGCTTGCTCCTCCAATTGTACCAAACCCTCCTACGCCGCCATCTACGCCGCCGCCATCCCTGACTGAGGATTACTATCACCCCACATCTGAGCGGAAGCAGTTGATTGAAACAAGTATGACTATCACAATTTGTACGATTGGGGCTGCTCTTCTTCTTGCTATTGTTTTCTCAATTGTTATATTTTACCGCCGCCGCCGCCGCAACAATTCGTCGAGGAGTAGGTCTTTACCGATTTTGTTTGATACCCAACGAGATTTTATTGATGAAGATCACGGTCCTGTTCTTACGAGCCCAAAGATCGATCATCCCATTTGGTACATACACACTGTTGGTCTCCCACAATCTGTGATTGACTCTATAACTGTCTGCAAGTTTCGAAAAGATGAGGGTTTAATTGAGGGAACGGATTGTTCTGTTTGCTTGAATGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTGCCGAAGTGCAGTCATGCCTTTCACATCCCTTGTATTGATACCTGGTTGAGATCACATAAGAATTGCCCGCTTTGCCGCGCCCCGATTGTTTATGACACTGCTAGTGCTCAGGTGAGTGAACCGGAGCCTGTTTCGAGTGGTTCAGGTTCAAGGGATAGCGGTGAGGTGGAGAATTTGGAGGGTGATGGAGGGGCTGAAAGTGTTGGAAGTTGGACTAATGAGGTTGGGGCTGGAGAGGATGGTAATGTTTCTGTAATTCCAATTGAGGGAAGGGCAGCTGAAAGTTCGAGGAAGGTTTTGCGAAATTCTATTGTGCCTGTGGGAAGTTGTGATCCGAGAGCATTAAGTGATTTGACTGACAATCGGCGTGTTACTGAAGAGGATATTCAACCAATGAGGAGATCAGTTTCGATGGATTCAATGTCTGCTTTGAGAATATATCGCGATGTGGCGAATGTAATTCCTGAAGAAGGAAGTTCGAATTCCCAATCACATGTAAAGAATATGAATTCGGGGAATGTTTCGAAGCATGGCAGTTCAAGTTCTAGCCTAGCCAAACTAATGAGAAGTTCTTCAATTGGGTTTTCTCTGCAGATGGGGTCAATATCAATGAAAAAGCCCTTTGCATCTGGCAGGAAGCTTTTTTCATCCAAACATGGAAGGAGTCTTAGCTCAATCCTACCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

391

Amino Acids

42.53

Weight (kDa)

6.38

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	144 - 187	3.2e-14	Ring finger domain
zf-RING_11	PF17123	144 - 173	9.1e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	145 - 186	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	145 - 186	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	151 - 187	1e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	2 cut(s)	561, 927
AclWI	GGATC	1 cut(s)	809
AcsI	RAATTY	4 cut(s)	655, 787, 964, 991
AcuI	CTGAAG	2 cut(s)	879, 969
AfaI	GTAC	3 cut(s)	42, 157, 341
AfiI	CCNNNNNNNGG	3 cut(s)	88, 749, 953
AflIII	ACRYGT	1 cut(s)	976
AgsI	TTSAA	8 cut(s)	131, 448, 458, 633, 872, 903, 1023, 1059
AjnI	CCWGG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	25, 761, 1123, 1155
AluI	AGCT	4 cut(s)	25, 761, 1123, 1155
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	809
ApeKI	GCWGC	2 cut(s)	167, 758
ApoI	RAATTY	4 cut(s)	655, 787, 964, 991
Asp700I	GAANNNNTTC	1 cut(s)	1054
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	4 cut(s)	92, 607, 656, 677
AsuII	TTCGAA	3 cut(s)	400, 962, 1007
AvaII	GGWCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	154, 770
BccI	CCATC	6 cut(s)	70, 85, 662, 716, 889, 1072
BciT130I	CCWGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	3 cut(s)	585, 1029, 1034
BfmI	CTRYAG	1 cut(s)	1073
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	526
BmsI	GCATC	1 cut(s)	1118
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	3 cut(s)	400, 962, 1007
Bsa29I	ATCGAT	1 cut(s)	324
BsaBI	GATNNNNATC	2 cut(s)	96, 291
BsaI	GGTCTC	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 749, 953
Bse8I	GATNNNNATC	2 cut(s)	96, 291
BseBI	CCWGG	1 cut(s)	526
BseCI	ATCGAT	1 cut(s)	324
BseGI	GGATG	5 cut(s)	77, 328, 507, 727, 1130
BseJI	GATNNNNATC	2 cut(s)	96, 291
BseLI	CCNNNNNNNGG	3 cut(s)	88, 749, 953
BseMII	CTCAG	3 cut(s)	78, 102, 605
BseRI	GAGGAG	3 cut(s)	21, 253, 895
BseXI	GCAGC	2 cut(s)	154, 770
BsgI	GTGCAG	1 cut(s)	511
Bsh1236I	CGCG	2 cut(s)	561, 927
BshVI	ATCGAT	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	88, 749, 953
BsmAI	GTCTC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	3 cut(s)	400, 962, 1007
Bsp1286I	GDGCHC	2 cut(s)	317, 592
Bsp143I	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
Bsp68I	TCGCGA	1 cut(s)	927
BspCNI	CTCAG	3 cut(s)	79, 103, 604
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	561, 927
BspLI	GGNNCC	1 cut(s)	609
BspMAI	CTGCAG	1 cut(s)	1077
BspPI	GGATC	1 cut(s)	809
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	3 cut(s)	400, 962, 1007
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	115
BssMI	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	299, 352, 388
Bst6I	CTCTTC	2 cut(s)	177, 855
BstBI	TTCGAA	3 cut(s)	400, 962, 1007
BstC8I	GCNNGC	2 cut(s)	27, 551
BstDEI	CTNAG	5 cut(s)	87, 111, 473, 591, 1151
BstENI	CCTNNNNNAGG	2 cut(s)	86, 951
BstF5I	GGATG	5 cut(s)	77, 328, 507, 727, 1130
BstFNI	CGCG	2 cut(s)	561, 927
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	6 cut(s)	295, 324, 328, 536, 817, 887
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 219, 222, 555
BstNI	CCWGG	1 cut(s)	526
BstNSI	RCATGY	1 cut(s)	980
BstSCI	CCNGG	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	1073
BstUI	CGCG	2 cut(s)	561, 927
BstV1I	GCAGC	2 cut(s)	154, 770
Bsu15I	ATCGAT	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	942
BtsCI	GGATG	5 cut(s)	77, 328, 507, 727, 1130
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	348, 579
BtuMI	TCGCGA	1 cut(s)	927
Cac8I	GCNNGC	2 cut(s)	27, 551
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	41, 156, 340
CviAII	CATG	4 cut(s)	497, 977, 1013, 1139
CviQI	GTAC	3 cut(s)	41, 156, 340
DdeI	CTNAG	5 cut(s)	87, 111, 473, 591, 1151
DpnI	GATC	6 cut(s)	294, 323, 327, 535, 816, 886
DpnII	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
Eam1104I	CTCTTC	2 cut(s)	177, 855
EarI	CTCTTC	2 cut(s)	177, 855
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	879, 969
EcoNI	CCTNNNNNAGG	2 cut(s)	86, 951
EcoRI	GAATTC	2 cut(s)	964, 991
EcoRII	CCWGG	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	4 cut(s)	500, 980, 1016, 1142
FatI	CATG	4 cut(s)	496, 976, 1012, 1138
FauI	CCCGC	1 cut(s)	558
FokI	GGATG	5 cut(s)	64, 315, 494, 734, 1117
FriOI	GRGCYC	1 cut(s)	317
FspBI	CTAG	3 cut(s)	585, 1029, 1034
GlaI	GCGC	1 cut(s)	562
GsuI	CTGGAG	1 cut(s)	735
HapII	CCGG	1 cut(s)	605
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	500, 980, 1016, 1142
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	1121
HinfI	GANTC	4 cut(s)	377, 469, 899, 1147
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	4 cut(s)	92, 607, 656, 677
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	2 cut(s)	112, 819
Hpy188III	TCNNGA	2 cut(s)	926, 947
Hpy8I	GTNNAC	1 cut(s)	602
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	747, 769, 947, 1137
HpyCH4III	ACNGT	3 cut(s)	299, 352, 388
HpyCH4V	TGCA	4 cut(s)	393, 492, 1075, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 219, 222, 555
HpyF3I	CTNAG	5 cut(s)	87, 111, 473, 591, 1151
Hsp92II	CATG	4 cut(s)	500, 980, 1016, 1142
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	34, 607
Lsp1109I	GCAGC	2 cut(s)	154, 770
LweI	GCATC	1 cut(s)	1118
MabI	ACCWGGT	1 cut(s)	524
MaeI	CTAG	3 cut(s)	585, 1029, 1034
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	6 cut(s)	294, 323, 327, 535, 816, 886
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
MboII	GAAGA	8 cut(s)	164, 167, 302, 470, 473, 872, 962, 1047
MfeI	CAATTG	4 cut(s)	36, 195, 744, 1059
MhlI	GDGCHC	2 cut(s)	317, 592
MlyI	GAGTC	3 cut(s)	371, 478, 1156
MmeI	TCCRAC	2 cut(s)	667, 674
MroXI	GAANNNNTTC	1 cut(s)	1054
MseI	TTAA	2 cut(s)	416, 827
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	526
MunI	CAATTG	4 cut(s)	36, 195, 744, 1059
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	2 cut(s)	561, 927
MwoI	GCNNNNNNNGC	4 cut(s)	67, 219, 222, 555
NdeII	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
NlaIII	CATG	4 cut(s)	500, 980, 1016, 1142
NlaIV	GGNNCC	1 cut(s)	609
NruI	TCGCGA	1 cut(s)	927
NspI	RCATGY	1 cut(s)	980
NspV	TTCGAA	3 cut(s)	400, 962, 1007
PciI	ACATGT	1 cut(s)	976
PciSI	GCTCTTC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	1054
PfeI	GAWTC	1 cut(s)	899
PleI	GAGTC	3 cut(s)	371, 477, 1155
PpsI	GAGTC	3 cut(s)	371, 477, 1155
PscI	ACATGT	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	1077
PvuII	CAGCTG	1 cut(s)	761
RruI	TCGCGA	1 cut(s)	927
RsaI	GTAC	3 cut(s)	42, 157, 341
RsaNI	GTAC	3 cut(s)	41, 156, 340
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	416, 827
Sau3AI	GATC	6 cut(s)	292, 321, 325, 533, 814, 884
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	3 cut(s)	371, 478, 1156
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	2 cut(s)	317, 592
SexAI	ACCWGGT	1 cut(s)	524
SfaNI	GCATC	1 cut(s)	1118
SfcI	CTRYAG	1 cut(s)	1073
SfuI	TTCGAA	3 cut(s)	400, 962, 1007
SinI	GGWCC	1 cut(s)	299
SspMI	CTAG	3 cut(s)	585, 1029, 1034
StyD4I	CCNGG	1 cut(s)	524
TaaI	ACNGT	3 cut(s)	299, 352, 388
TaqI	TCGA	8 cut(s)	236, 324, 400, 617, 770, 893, 962, 1007
TauI	GCSGC	8 cut(s)	61, 73, 76, 216, 219, 222, 225, 561
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	2 cut(s)	416, 827
Tru9I	TTAA	2 cut(s)	416, 827
TscAI	CASTG	2 cut(s)	355, 586
TseI	GCWGC	2 cut(s)	167, 758
TspDTI	ATGAA	5 cut(s)	17, 303, 1004, 1109, 1119
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	2 cut(s)	355, 586
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	2 cut(s)	86, 951
XapI	RAATTY	4 cut(s)	655, 787, 964, 991
XceI	RCATGY	1 cut(s)	980
XmnI	GAANNNNTTC	1 cut(s)	1054
XspI	CTAG	3 cut(s)	585, 1029, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.