Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

24056472 .. 24058227

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCCCCACTTAAATTTCTCCTCCCCTCCAAAATCGTTATATAAACCCCTTCAAACCAAACCCCTCCTCCTCACAGCCTCCTCACCAAACACCTTCTTTCTCTCTCTAGAAATTCCAGTTTTCTCTTCAGACAGTAAGAGAGAGAAGAAGGAAGAGGAGGAGAGAGAGACAACAGCAATGGCTCTCACAAACCCAGCAACCCTGTCCTCCAAATCAATCTGCAAAACTCACTCTCTCTCCCCTCCCACCCCTCAGTCTCACCAACCCATTTTCTCCCCATTTCCTTCCAAGAAAAAGAACCTCTACCCCATCTCCGCCTCCGCCGACTCCGGCAAGTCCCCCGTCGTCGCCGAGAAGCCTCCAAAGGCCGCTGCGGCGCCCGCGAAGTCGGTTTCCGGAAAATGGAGCTTGGACAGCTGGAAATCCAAGAAGGCCCTGCAGCTTCCGGAGTACCCGGATGTGAACGAGCTGGAGACGGTGCTAAAGACCATCGAGTCATTTCCTCCGATTGTGTTCGCCGGAGAGGCCAGGCACTTGGAGGAGAAGCTCGCCGAGGCGGCCCTGGGCAATGCTTTTCTCTTGCAGGGCGGCGACTGCGCTGAGAGCTTCAAGGAGTTCAGCGCCAACAACATTAGGGACACCTTCAGAATCATGCTTCAGATGGGTGTTGTTCTGATGTTTGGAGGACAAGTGCCTGTTATCAAGGTGGGAAGAATGGCGGGTCAGTTCGCGAAGCCAAGATCAGCGGATTTTGAAGAGAAGAATGGGGTGAAGTTGCCGGTTTACAAAGGGGATAACATCAATGGTGACGCTTTTGATGAGAAATCTAGAAATCCAGACCCCCAGAGGTTGATAAGAGCTTATTGCCAATCCGCGGCGACTTTGAACCTTCTTCGGGCCTTTGCCACCGGAGGGTATGCTGCTATGCAGAGGGTTACTCAATGGAATCTTGATTTTGCTCAGCACAGCGAGCAGGGAGATAGGTACCAGGAACTGGCTAGCCGGGTCGACGAGGCTTTAGGGTTCATGAATGCTGCTGGACTTACAGTTGATCGATCCTATCATGACAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

359

Amino Acids

39.36

Weight (kDa)

8.56

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	135 - 351	4.4e-89	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
Acc65I	GGTACC	1 cut(s)	984
AccB1I	GGYRCC	2 cut(s)	376, 984
AccB7I	CCANNNNNTGG	1 cut(s)	994
AccI	GTMKAC	1 cut(s)	1008
AccII	CGCG	3 cut(s)	383, 731, 875
AccIII	TCCGGA	2 cut(s)	395, 445
AclWI	GGATC	1 cut(s)	1050
AcsI	RAATTY	2 cut(s)	13, 111
AcuI	CTGAAG	3 cut(s)	111, 628, 641
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	2 cut(s)	452, 986
AfiI	CCNNNNNNNGG	5 cut(s)	402, 874, 895, 912, 994
AgsI	TTSAA	4 cut(s)	53, 610, 755, 886
AjnI	CCWGG	3 cut(s)	527, 561, 987
AluBI	AGCT	7 cut(s)	408, 417, 442, 469, 547, 606, 860
AluI	AGCT	7 cut(s)	408, 417, 442, 469, 547, 606, 860
Alw26I	GTCTC	3 cut(s)	161, 261, 467
AlwI	GGATC	1 cut(s)	1050
AlwNI	CAGNNNCTG	1 cut(s)	994
Aor13HI	TCCGGA	2 cut(s)	395, 445
AoxI	GGCC	5 cut(s)	366, 432, 525, 558, 897
ApeKI	GCWGC	4 cut(s)	371, 439, 920, 1034
ApoI	RAATTY	2 cut(s)	13, 111
Asp718I	GGTACC	1 cut(s)	984
AspLEI	GCGC	3 cut(s)	379, 599, 623
AspS9I	GGNCC	3 cut(s)	433, 559, 897
AsuC2I	CCSGG	2 cut(s)	455, 1004
AsuHPI	GGTGA	4 cut(s)	75, 251, 781, 818
AsuNHI	GCTAGC	1 cut(s)	998
BanI	GGYRCC	2 cut(s)	376, 984
BbvI	GCAGC	4 cut(s)	358, 451, 907, 1021
BccI	CCATC	3 cut(s)	317, 497, 655
BciT130I	CCWGG	3 cut(s)	529, 563, 989
BcnI	CCSGG	2 cut(s)	455, 1004
BcoDI	GTCTC	3 cut(s)	161, 261, 467
BfaI	CTAG	3 cut(s)	107, 828, 999
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	2 cut(s)	380, 624
BglI	GCCNNNNNGGC	3 cut(s)	374, 524, 557
BisI	GCNGC	9 cut(s)	369, 372, 375, 440, 558, 589, 876, 921, 1035
BlpI	GCTNAGC	1 cut(s)	960
BlsI	GCNGC	9 cut(s)	370, 373, 376, 441, 559, 590, 877, 922, 1036
Bme1390I	CCNGG	5 cut(s)	455, 529, 563, 989, 1004
BmgT120I	GGNCC	3 cut(s)	433, 559, 897
BmiI	GGNNCC	2 cut(s)	378, 986
BmrFI	CCNGG	5 cut(s)	455, 529, 563, 989, 1004
BmtI	GCTAGC	1 cut(s)	1002
BplI	GAGNNNNNCTC	2 cut(s)	922, 954
BpmI	CTGGAG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	960
BpuMI	CCSGG	2 cut(s)	455, 1004
Bsa29I	ATCGAT	1 cut(s)	1054
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	4 cut(s)	552, 561, 562, 873
BsaWI	WCCGGW	3 cut(s)	395, 445, 908
BsaXI	ACNNNNNCTCC	8 cut(s)	51, 81, 221, 251, 296, 326, 675, 705
Bsc4I	CCNNNNNNNGG	5 cut(s)	402, 874, 895, 912, 994
Bse118I	RCCGGY	1 cut(s)	778
Bse1I	ACTGG	2 cut(s)	116, 999
Bse3DI	GCAATG	2 cut(s)	183, 574
BseAI	TCCGGA	2 cut(s)	395, 445
BseBI	CCWGG	3 cut(s)	529, 563, 989
BseCI	ATCGAT	1 cut(s)	1054
BseDI	CCNNGG	4 cut(s)	552, 561, 562, 873
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	5 cut(s)	402, 874, 895, 912, 994
BseMI	GCAATG	2 cut(s)	183, 574
BseMII	CTCAG	3 cut(s)	266, 591, 974
BseNI	ACTGG	2 cut(s)	116, 999
BseRI	GAGGAG	7 cut(s)	10, 56, 59, 70, 170, 173, 554
BseXI	GCAGC	4 cut(s)	358, 451, 907, 1021
BseYI	CCCAGC	1 cut(s)	193
Bsh1236I	CGCG	3 cut(s)	383, 731, 875
BshFI	GGCC	5 cut(s)	368, 434, 527, 560, 899
BshNI	GGYRCC	2 cut(s)	376, 984
BshVI	ATCGAT	1 cut(s)	1054
BsiSI	CCGG	8 cut(s)	330, 396, 446, 455, 519, 779, 909, 1003
BslFI	GGGAC	2 cut(s)	322, 650
BslI	CCNNNNNNNGG	5 cut(s)	402, 874, 895, 912, 994
BsmAI	GTCTC	3 cut(s)	161, 261, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	322, 650
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	5 cut(s)	368, 434, 527, 560, 899
Bsp13I	TCCGGA	2 cut(s)	395, 445
Bsp143I	GATC	3 cut(s)	740, 1051, 1055
Bsp1720I	GCTNAGC	1 cut(s)	960
Bsp68I	TCGCGA	1 cut(s)	731
BspANI	GGCC	5 cut(s)	368, 434, 527, 560, 899
BspCNI	CTCAG	3 cut(s)	265, 592, 973
BspDI	ATCGAT	1 cut(s)	1054
BspEI	TCCGGA	2 cut(s)	395, 445
BspFNI	CGCG	3 cut(s)	383, 731, 875
BspHI	TCATGA	2 cut(s)	1026, 1063
BspLI	GGNNCC	2 cut(s)	378, 986
BspMAI	CTGCAG	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	1002
BspPI	GGATC	1 cut(s)	1050
BspT107I	GGYRCC	2 cut(s)	376, 984
BsrDI	GCAATG	2 cut(s)	183, 574
BsrFI	RCCGGY	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	116, 999
BssAI	RCCGGY	1 cut(s)	778
BssECI	CCNNGG	4 cut(s)	552, 561, 562, 873
BssMI	GATC	3 cut(s)	740, 1051, 1055
BssNI	GRCGYC	1 cut(s)	377
Bst2UI	CCWGG	3 cut(s)	529, 563, 989
Bst4CI	ACNGT	3 cut(s)	134, 478, 1048
Bst6I	CTCTTC	3 cut(s)	130, 147, 750
BstACI	GRCGYC	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	381, 549, 971, 1000
BstDEI	CTNAG	3 cut(s)	252, 600, 960
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	3 cut(s)	383, 731, 875
BstH2I	RGCGCY	2 cut(s)	380, 624
BstHHI	GCGC	3 cut(s)	379, 599, 623
BstKTI	GATC	3 cut(s)	743, 1054, 1058
BstMAI	GTCTC	3 cut(s)	161, 261, 467
BstMBI	GATC	3 cut(s)	740, 1051, 1055
BstMWI	GCNNNNNNNGC	8 cut(s)	374, 380, 414, 524, 557, 594, 603, 970
BstNI	CCWGG	3 cut(s)	529, 563, 989
BstSCI	CCNGG	5 cut(s)	453, 527, 561, 987, 1002
BstSFI	CTRYAG	1 cut(s)	437
BstUI	CGCG	3 cut(s)	383, 731, 875
BstV1I	GCAGC	4 cut(s)	358, 451, 907, 1021
BstXI	CCANNNNNNTGG	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	1054
BsuRI	GGCC	5 cut(s)	368, 434, 527, 560, 899
BsuTUI	ATCGAT	1 cut(s)	1054
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	1 cut(s)	463
BtuMI	TCGCGA	1 cut(s)	731
Cac8I	GCNNGC	4 cut(s)	381, 549, 971, 1000
CaiI	CAGNNNCTG	1 cut(s)	994
CciI	TCATGA	2 cut(s)	1026, 1063
CfoI	GCGC	3 cut(s)	379, 599, 623
Cfr10I	RCCGGY	1 cut(s)	778
Cfr13I	GGNCC	3 cut(s)	433, 559, 897
Cfr42I	CCGCGG	1 cut(s)	876
ClaI	ATCGAT	1 cut(s)	1054
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	451, 985
CviAII	CATG	3 cut(s)	652, 1027, 1064
CviQI	GTAC	2 cut(s)	451, 985
DdeI	CTNAG	3 cut(s)	252, 600, 960
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	3 cut(s)	742, 1053, 1057
DpnII	GATC	3 cut(s)	740, 1051, 1055
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	3 cut(s)	130, 147, 750
EarI	CTCTTC	3 cut(s)	130, 147, 750
EciI	GGCGGA	2 cut(s)	304, 310
Eco57I	CTGAAG	3 cut(s)	111, 628, 641
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	527, 561, 987
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	3 cut(s)	655, 1030, 1067
FaiI	YATR	7 cut(s)	40, 42, 653, 918, 926, 1028, 1065
FaqI	GGGAC	2 cut(s)	322, 650
FatI	CATG	3 cut(s)	651, 1026, 1063
FauI	CCCGC	2 cut(s)	388, 712
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	9 cut(s)	369, 372, 375, 440, 558, 589, 876, 921, 1035
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	9 cut(s)	369, 372, 375, 440, 558, 589, 876, 921, 1035
FspBI	CTAG	3 cut(s)	107, 828, 999
GlaI	GCGC	3 cut(s)	378, 598, 622
GluI	GCNGC	9 cut(s)	369, 372, 375, 440, 558, 589, 876, 921, 1035
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	2 cut(s)	380, 624
HaeIII	GGCC	5 cut(s)	368, 434, 527, 560, 899
HapII	CCGG	8 cut(s)	330, 396, 446, 455, 519, 779, 909, 1003
HgaI	GACGC	1 cut(s)	818
HhaI	GCGC	3 cut(s)	379, 599, 623
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	655, 1030, 1067
Hin6I	GCGC	3 cut(s)	377, 597, 621
HinP1I	GCGC	3 cut(s)	377, 597, 621
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HinfI	GANTC	4 cut(s)	326, 494, 648, 946
HpaII	CCGG	8 cut(s)	330, 396, 446, 455, 519, 779, 909, 1003
HphI	GGTGA	4 cut(s)	75, 251, 781, 818
Hpy166II	GTNNAC	3 cut(s)	463, 784, 1009
Hpy188I	TCNGA	5 cut(s)	130, 507, 647, 660, 675
Hpy188III	TCNNGA	9 cut(s)	107, 396, 446, 730, 828, 836, 950, 1027, 1064
Hpy8I	GTNNAC	3 cut(s)	463, 784, 1009
Hpy99I	CGWCG	3 cut(s)	347, 350, 1013
HpyAV	CCTTC	7 cut(s)	59, 103, 142, 294, 424, 652, 899
HpyCH4III	ACNGT	3 cut(s)	134, 478, 1048
HpyCH4V	TGCA	4 cut(s)	222, 439, 583, 928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	374, 380, 414, 524, 557, 594, 603, 970
HpyF3I	CTNAG	3 cut(s)	252, 600, 960
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	3 cut(s)	655, 1030, 1067
HspAI	GCGC	3 cut(s)	377, 597, 621
KasI	GGCGCC	1 cut(s)	376
Kpn2I	TCCGGA	2 cut(s)	395, 445
KpnI	GGTACC	1 cut(s)	988
KspI	CCGCGG	1 cut(s)	876
Kzo9I	GATC	3 cut(s)	740, 1051, 1055
LmnI	GCTCC	1 cut(s)	405
Lsp1109I	GCAGC	4 cut(s)	358, 451, 907, 1021
MaeI	CTAG	3 cut(s)	107, 828, 999
MaeIII	GTNAC	2 cut(s)	806, 934
MalI	GATC	3 cut(s)	742, 1053, 1057
MboI	GATC	3 cut(s)	740, 1051, 1055
MboII	GAAGA	7 cut(s)	117, 157, 164, 723, 767, 772, 884
MluCI	AATT	2 cut(s)	13, 111
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	320, 503
MroI	TCCGGA	2 cut(s)	395, 445
MseI	TTAA	1 cut(s)	11
MspA1I	CMGCKG	4 cut(s)	371, 417, 746, 875
MspI	CCGG	8 cut(s)	330, 396, 446, 455, 519, 779, 909, 1003
MspR9I	CCNGG	5 cut(s)	455, 529, 563, 989, 1004
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	529, 563, 989
MvnI	CGCG	3 cut(s)	383, 731, 875
MwoI	GCNNNNNNNGC	8 cut(s)	374, 380, 414, 524, 557, 594, 603, 970
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	2 cut(s)	455, 1004
NdeII	GATC	3 cut(s)	740, 1051, 1055
NheI	GCTAGC	1 cut(s)	998
NlaIII	CATG	3 cut(s)	655, 1030, 1067
NlaIV	GGNNCC	2 cut(s)	378, 986
NmeAIII	GCCGAG	2 cut(s)	376, 577
NmuCI	GTSAC	1 cut(s)	806
NruI	TCGCGA	1 cut(s)	731
PagI	TCATGA	2 cut(s)	1026, 1063
PasI	CCCWGGG	1 cut(s)	562
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	2 cut(s)	648, 946
PflMI	CCANNNNNTGG	1 cut(s)	994
PkrI	GCNGC	9 cut(s)	370, 373, 376, 441, 559, 590, 877, 922, 1036
PleI	GAGTC	2 cut(s)	320, 502
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	2 cut(s)	320, 502
Psp6I	CCWGG	3 cut(s)	527, 561, 987
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	527, 561, 987
PspN4I	GGNNCC	2 cut(s)	378, 986
PspPI	GGNCC	3 cut(s)	433, 559, 897
PstI	CTGCAG	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	994
PvuII	CAGCTG	1 cut(s)	417
RruI	TCGCGA	1 cut(s)	731
RsaI	GTAC	2 cut(s)	452, 986
RsaNI	GTAC	2 cut(s)	451, 985
SacII	CCGCGG	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	1007
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	9 cut(s)	369, 372, 375, 440, 558, 589, 876, 921, 1035
Sau3AI	GATC	3 cut(s)	740, 1051, 1055
Sau96I	GGNCC	3 cut(s)	433, 559, 897
SchI	GAGTC	2 cut(s)	320, 503
ScrFI	CCNGG	5 cut(s)	455, 529, 563, 989, 1004
SfcI	CTRYAG	1 cut(s)	437
SfoI	GGCGCC	1 cut(s)	378
Sfr303I	CCGCGG	1 cut(s)	876
SgrBI	CCGCGG	1 cut(s)	876
Sse9I	AATT	2 cut(s)	13, 111
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	3 cut(s)	107, 828, 999
StyD4I	CCNGG	5 cut(s)	453, 527, 561, 987, 1002
TaaI	ACNGT	3 cut(s)	134, 478, 1048
TaqI	TCGA	3 cut(s)	492, 1008, 1054
TasI	AATT	2 cut(s)	13, 111
TauI	GCSGC	5 cut(s)	371, 377, 560, 591, 878
TfiI	GAWTC	2 cut(s)	648, 946
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	4 cut(s)	371, 439, 920, 1034
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	2 cut(s)	1015, 1043
Van91I	CCANNNNNTGG	1 cut(s)	994
XapI	RAATTY	2 cut(s)	13, 111
XbaI	TCTAGA	2 cut(s)	106, 827
XmiI	GTMKAC	1 cut(s)	1008
XspI	CTAG	3 cut(s)	107, 828, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.