pycom15g29120

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006879
Physical Location & Seq
Reverse (-)
25758748 .. 25761611
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGAAGAAGATCATGGATCTTTACCCTTGGGCTGACGATTTCTTGATTGAGGATATTATGGTTGCAATGGATAATGATATGGATAAGGCCTCAATTTTATTGAAACAATGGTTTCCTCCGGCAGCTGTGGAGAGAATAACCAAACTAGCATTTCAAAAAAACAACTCCAGCTCAAATGTCTCTTTAAGTGATAGAGAATCTGTTCCTCAATCTCCTTCTGGCATTTCTAACCGTAACTCTACGATTCAAAACTGTCTCAAAGAGAATAAGATAGAATTGTTAACTGGTGATGATTGCGGTGTGCAAAAGCTTGCTATTGATGCAGCAAATAGGAAGCTGGTTCTGGGGAGTTTGGAGTCTGTACCCATCGAACCTGAGTGGGAAGAGGATGATGTTTACTTGAAGCATCGAAAAGATGCATTAAGGATGATGAGGTCAGCATCACAGCACTCTAAGGCAGCCACTCATGCCTTTGCAAGAGGTGACCATTTTTCCGCCCAACAACACTCAAAGAAGGCTCGAGAGGAACGGTTGGCTGCTGAAAGCCTCAATAAGAAGGCAGCCAAAGAAATTTTAAGGATCAAGAATAGCAAAAATGATTTATGGAAATTGGATTTACATGGCCTTCATGCATCTGAAGCAATTCAAGCCTTGCACGAACACCTGCAGCAAATTGAAACAAAGGAGCTATCTAATCGCTCTGTGTCACCAAACAGAGTTAAGATGGAAAAGATGATTATACGTTCTTCATCACATGAGTCGTTTAGTTGTACTGACAGAAAGAAATTGGATCAACAGAAGGCATCATCAACACAAAGATCGGCATCCTTAGAGATCATCACAGGGAGAGGTAATCATAGCCGAGGACAGGCTGCACTTCCAACAGCTGTGAGAAGTTTCCTTAATGAGAATGGGTATCGTTTTGAGGAGTTGAGACCAGGTGTAATCACAGTGCGGCCCAAGTTCCGTCACAGGGTTTTCCGGAAGAGAAATGCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

9.56

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 133 - 196 3.2e-12 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 672
AccIII TCCGGA 1 cut(s) 981
AciI CCGC 3 cut(s) 297, 495, 955
AclWI GGATC 3 cut(s) 24, 587, 798
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 2 cut(s) 363, 772
AfiI CCNNNNNNNGG 2 cut(s) 868, 973
AgsI TTSAA 6 cut(s) 103, 155, 248, 403, 647, 677
AjnI CCWGG 1 cut(s) 937
AluBI AGCT 6 cut(s) 125, 171, 310, 337, 688, 887
AluI AGCT 6 cut(s) 125, 171, 310, 337, 688, 887
Alw26I GTCTC 3 cut(s) 184, 260, 928
AlwI GGATC 3 cut(s) 24, 587, 798
Ama87I CYCGRG 1 cut(s) 519
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 3 cut(s) 87, 622, 956
ApeKI GCWGC 7 cut(s) 122, 323, 458, 536, 560, 667, 872
ApoI RAATTY 1 cut(s) 570
Asp700I GAANNNNTTC 2 cut(s) 201, 642
AspS9I GGNCC 1 cut(s) 957
AsuHPI GGTGA 3 cut(s) 299, 494, 699
AvaI CYCGRG 1 cut(s) 519
BbvI GCAGC 7 cut(s) 134, 335, 470, 523, 572, 679, 859
BccI CCATC 2 cut(s) 374, 718
BciT130I CCWGG 1 cut(s) 939
BcoDI GTCTC 3 cut(s) 184, 260, 928
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 672
BisI GCNGC 8 cut(s) 123, 324, 459, 537, 561, 668, 873, 956
BlsI GCNGC 8 cut(s) 124, 325, 460, 538, 562, 669, 874, 957
Bme1390I CCNGG 1 cut(s) 939
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 939
BmsI GCATC 7 cut(s) 310, 406, 415, 449, 641, 812, 833
BpmI CTGGAG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 823
BsaI GGTCTC 1 cut(s) 928
BsaJI CCNNGG 2 cut(s) 26, 862
BsaWI WCCGGW 1 cut(s) 981
Bsc4I CCNNNNNNNGG 2 cut(s) 868, 973
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 823
BseAI TCCGGA 1 cut(s) 981
BseBI CCWGG 1 cut(s) 939
BseDI CCNNGG 2 cut(s) 26, 862
BseGI GGATG 3 cut(s) 394, 432, 824
BseJI GATNNNNATC 1 cut(s) 823
BseLI CCNNNNNNNGG 2 cut(s) 868, 973
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 7 cut(s) 134, 335, 470, 523, 572, 679, 859
BsgI GTGCAG 1 cut(s) 858
BshFI GGCC 3 cut(s) 89, 624, 958
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 3 cut(s) 119, 982, 996
BslI CCNNNNNNNGG 2 cut(s) 868, 973
BsmAI GTCTC 3 cut(s) 184, 260, 928
BsnI GGCC 3 cut(s) 89, 624, 958
Bso31I GGTCTC 1 cut(s) 928
BsoBI CYCGRG 1 cut(s) 519
Bsp13I TCCGGA 1 cut(s) 981
Bsp143I GATC 6 cut(s) 9, 16, 579, 790, 818, 834
BspACI CCGC 3 cut(s) 297, 495, 955
BspANI GGCC 3 cut(s) 89, 624, 958
BspCNI CTCAG 1 cut(s) 367
BspEI TCCGGA 1 cut(s) 981
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 672
BspPI GGATC 3 cut(s) 24, 587, 798
BspTNI GGTCTC 1 cut(s) 928
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 26, 862
BssMI GATC 6 cut(s) 9, 16, 579, 790, 818, 834
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 939
Bst4CI ACNGT 4 cut(s) 233, 254, 531, 952
Bst6I CTCTTC 2 cut(s) 378, 980
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 375, 453, 829
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 3 cut(s) 394, 432, 824
BstKTI GATC 6 cut(s) 12, 19, 582, 793, 821, 837
BstMAI GTCTC 3 cut(s) 184, 260, 928
BstMBI GATC 6 cut(s) 9, 16, 579, 790, 818, 834
BstMWI GCNNNNNNNGC 4 cut(s) 320, 467, 638, 647
BstNI CCWGG 1 cut(s) 939
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 937
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 7 cut(s) 134, 335, 470, 523, 572, 679, 859
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 3 cut(s) 89, 624, 958
BtsCI GGATG 3 cut(s) 394, 432, 824
BtsIMutI CAGTG 1 cut(s) 957
BveI ACCTGC 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 957
CsiI ACCWGGT 1 cut(s) 937
Csp6I GTAC 2 cut(s) 362, 771
CviAII CATG 5 cut(s) 13, 467, 620, 629, 755
CviQI GTAC 2 cut(s) 362, 771
DdeI CTNAG 3 cut(s) 375, 453, 829
DpnI GATC 6 cut(s) 11, 18, 581, 792, 820, 836
DpnII GATC 6 cut(s) 9, 16, 579, 790, 818, 834
Eam1104I CTCTTC 2 cut(s) 378, 980
EarI CTCTTC 2 cut(s) 378, 980
EciI GGCGGA 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 519
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 937
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 2 cut(s) 421, 634
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 5 cut(s) 16, 470, 623, 632, 758
FatI CATG 5 cut(s) 12, 466, 619, 628, 754
Fnu4HI GCNGC 8 cut(s) 123, 324, 459, 537, 561, 668, 873, 956
FokI GGATG 3 cut(s) 401, 439, 811
Fsp4HI GCNGC 8 cut(s) 123, 324, 459, 537, 561, 668, 873, 956
FspBI CTAG 1 cut(s) 146
GluI GCNGC 8 cut(s) 123, 324, 459, 537, 561, 668, 873, 956
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 89, 624, 958
HapII CCGG 3 cut(s) 119, 982, 996
Hin1II CATG 5 cut(s) 16, 470, 623, 632, 758
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 197, 244, 356, 758
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 3 cut(s) 119, 982, 996
HphI GGTGA 3 cut(s) 299, 494, 699
Hpy166II GTNNAC 2 cut(s) 282, 397
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 4 cut(s) 43, 521, 583, 982
Hpy8I GTNNAC 2 cut(s) 282, 397
HpyAV CCTTC 5 cut(s) 225, 508, 550, 635, 793
HpyCH4III ACNGT 4 cut(s) 233, 254, 531, 952
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 9 cut(s) 65, 304, 323, 419, 476, 632, 655, 667, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 467, 638, 647
HpyF3I CTNAG 3 cut(s) 375, 453, 829
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 5 cut(s) 16, 470, 623, 632, 758
Kpn2I TCCGGA 1 cut(s) 981
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 6 cut(s) 9, 16, 579, 790, 818, 834
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 7 cut(s) 134, 335, 470, 523, 572, 679, 859
LweI GCATC 7 cut(s) 310, 406, 415, 449, 641, 812, 833
MabI ACCWGGT 1 cut(s) 937
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 4 cut(s) 233, 482, 705, 968
MalI GATC 6 cut(s) 11, 18, 581, 792, 820, 836
MboI GATC 6 cut(s) 9, 16, 579, 790, 818, 834
MboII GAAGA 5 cut(s) 16, 19, 395, 738, 997
MflI RGATCY 1 cut(s) 16
MluCI AATT 7 cut(s) 93, 275, 570, 608, 642, 672, 785
MlyI GAGTC 2 cut(s) 365, 767
MmeI TCCRAC 1 cut(s) 905
Mph1103I ATGCAT 2 cut(s) 421, 634
MroI TCCGGA 1 cut(s) 981
MroXI GAANNNNTTC 2 cut(s) 201, 642
MseI TTAA 6 cut(s) 185, 281, 422, 575, 720, 903
MspA1I CMGCKG 2 cut(s) 125, 887
MspI CCGG 3 cut(s) 119, 982, 996
MspR9I CCNGG 1 cut(s) 939
MvaI CCWGG 1 cut(s) 939
MwoI GCNNNNNNNGC 4 cut(s) 320, 467, 638, 647
NdeII GATC 6 cut(s) 9, 16, 579, 790, 818, 834
NlaIII CATG 5 cut(s) 16, 470, 623, 632, 758
NmeAIII GCCGAG 1 cut(s) 887
NmuCI GTSAC 3 cut(s) 482, 705, 968
NsiI ATGCAT 2 cut(s) 421, 634
PaeR7I CTCGAG 1 cut(s) 519
PaqCI CACCTGC 1 cut(s) 672
PceI AGGCCT 1 cut(s) 89
PdmI GAANNNNTTC 2 cut(s) 201, 642
PfeI GAWTC 2 cut(s) 197, 244
PkrI GCNGC 8 cut(s) 124, 325, 460, 538, 562, 669, 874, 957
PleI GAGTC 2 cut(s) 364, 766
PpsI GAGTC 2 cut(s) 364, 766
Psp6I CCWGG 1 cut(s) 937
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 1 cut(s) 937
PspPI GGNCC 1 cut(s) 957
PstI CTGCAG 1 cut(s) 669
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 2 cut(s) 125, 887
RsaI GTAC 2 cut(s) 363, 772
RsaNI GTAC 2 cut(s) 362, 771
SaqAI TTAA 6 cut(s) 185, 281, 422, 575, 720, 903
SatI GCNGC 8 cut(s) 123, 324, 459, 537, 561, 668, 873, 956
Sau3AI GATC 6 cut(s) 9, 16, 579, 790, 818, 834
Sau96I GGNCC 1 cut(s) 957
SchI GAGTC 2 cut(s) 365, 767
ScrFI CCNGG 1 cut(s) 939
SexAI ACCWGGT 1 cut(s) 937
SfaNI GCATC 7 cut(s) 310, 406, 415, 449, 641, 812, 833
SfcI CTRYAG 1 cut(s) 665
Sfr274I CTCGAG 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 7 cut(s) 93, 275, 570, 608, 642, 672, 785
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 3 cut(s) 297, 495, 955
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 937
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 4 cut(s) 233, 254, 531, 952
TaiI ACGT 1 cut(s) 745
TaqI TCGA 3 cut(s) 369, 409, 520
TasI AATT 7 cut(s) 93, 275, 570, 608, 642, 672, 785
TatI WGTACW 1 cut(s) 770
TauI GCSGC 1 cut(s) 958
TfiI GAWTC 2 cut(s) 197, 244
Tru1I TTAA 6 cut(s) 185, 281, 422, 575, 720, 903
Tru9I TTAA 6 cut(s) 185, 281, 422, 575, 720, 903
TscAI CASTG 1 cut(s) 957
TseFI GTSAC 3 cut(s) 482, 705, 968
TseI GCWGC 7 cut(s) 122, 323, 458, 536, 560, 667, 872
Tsp45I GTSAC 3 cut(s) 482, 705, 968
TspDTI ATGAA 3 cut(s) 17, 617, 738
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 1 cut(s) 957
XapI RAATTY 1 cut(s) 570
XhoI CTCGAG 1 cut(s) 519
XmnI GAANNNNTTC 2 cut(s) 201, 642
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 2 cut(s) 421, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.