pycom15g29580

Nuclear speckle splicing regulatory protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008231
Physical Location & Seq
Forward (+)
26505671 .. 26506669
999 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGATTAAGTACGGGTTGAACCTAAGGGGGCAGCAGAAGAAGCAGCCAACAAGGCCTCCTGTCCCTAAACCTGTGGGTTTTGATGACAATGACGACGACAATGATGTTGAGAAGGAAATATCTCGCCAGGCTTCCAAGAACAAATCTCTCAAGGATATTGAGGAACAGCAGAGGAAGGCACTGGAGCAGGACCCGTCGGTGTTCGACTACGATGGAGTTTATGACCAGATGAAACAGAAAGCCATCCAACCTCGGGTGCAAGATCGTCAAGAGAGAATGGCAAGGTATATTCCTGGTATACAGAGAAAGGCAGAAGAACGAAAGCGAGAGCAGGAGATAATATACGAGAGAAAACTACAGAAAGAGAGAAACCAAGAGGATCACCTCTATGCAGACAAGGAACGCTTTGTCACAGGTGCTTACAAAAAGAAACTTGCAGACCAAGCAAAATGGGCAGAGGAAGATCGACTGCGTCAACTTCGGGAGGAGAAAGATGATGTTACCAAGAAGAAAGACTTGACTGATTTCTACTTCAACCTTCAAAAAAATGTTGCTTTTGGTGCAGAAAATGTGAAGTCCAGGAAGCTAGAGAAGCCGGAGGAATTAAGCAGGCCAGATAAACATGAAGATAGAGATAGACCAATTACTGCAGCATTGGAGCCATTGGGGCCTTCCAGTGTGAGAGAGGGGCATCTAGAGAAGCAGACCGAATCAGGCAAGCCAGACAAACTTGAAGACAGAGTAATCGCTGCAGCATCAGTGCCGTTGGAGTCTCCCATGGTGATAGAGGGACATCAAGATGAAAGTTTAACCAAGTCTAAATGTCGTGATGAGCTCTCTGAAGAAAAGCAAGCTTCAAATGCATCAGCACAGGAAAAACCGTCAGTTGAACAGCCGCCAGAAAACCAACCGAGTAGTAATCATCATAAAAGAAGTGCAGATGACGTGGCTGCAGCAAGAGAACGCTATCTAGCAAGGAAGAGACCTAAAGAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2040

Protein Analysis

333

Amino Acids

38.56

Weight (kDa)

7.05

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NSRP1_N PF09745 54 - 170 2.1e-35 Nuclear speckle splicing regulatory protein 1, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AciI CCGC 1 cut(s) 896
AclWI GGATC 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 6 cut(s) 19, 535, 542, 734, 858, 890
AjiI CACGTC 1 cut(s) 946
AjnI CCWGG 3 cut(s) 126, 292, 578
AluBI AGCT 3 cut(s) 586, 835, 854
AluI AGCT 3 cut(s) 586, 835, 854
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 2 cut(s) 777, 976
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 3 cut(s) 53, 611, 668
ApeKI GCWGC 7 cut(s) 31, 43, 650, 749, 752, 950, 953
AspS9I GGNCC 2 cut(s) 190, 668
AsuHPI GGTGA 2 cut(s) 374, 793
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 7 cut(s) 43, 55, 662, 736, 764, 937, 965
BccI CCATC 2 cut(s) 206, 251
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 3 cut(s) 128, 294, 580
BcoDI GTCTC 2 cut(s) 777, 976
BfaI CTAG 3 cut(s) 587, 695, 971
BfmI CTRYAG 4 cut(s) 356, 648, 750, 951
BglI GCCNNNNNGGC 2 cut(s) 52, 667
BisI GCNGC 8 cut(s) 32, 44, 651, 750, 753, 896, 951, 954
BlsI GCNGC 8 cut(s) 33, 45, 652, 751, 754, 897, 952, 955
Bme1390I CCNGG 3 cut(s) 128, 294, 580
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 946
BmgT120I GGNCC 2 cut(s) 190, 668
BmiI GGNNCC 3 cut(s) 192, 660, 669
BmrFI CCNGG 3 cut(s) 128, 294, 580
BmsI GCATC 3 cut(s) 700, 764, 872
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 976
BsaJI CCNNGG 2 cut(s) 251, 777
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 186, 675
Bse21I CCTNAGG 1 cut(s) 23
BseBI CCWGG 3 cut(s) 128, 294, 580
BseDI CCNNGG 2 cut(s) 251, 777
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 186, 675
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 7 cut(s) 43, 55, 662, 736, 764, 937, 965
BsgI GTGCAG 2 cut(s) 582, 957
BshFI GGCC 3 cut(s) 55, 613, 670
BsiHKAI GWGCWC 1 cut(s) 837
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 2 cut(s) 47, 804
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 777, 976
BsmFI GGGAC 2 cut(s) 47, 804
BsnI GGCC 3 cut(s) 55, 613, 670
Bso31I GGTCTC 1 cut(s) 976
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 837
Bsp143I GATC 3 cut(s) 262, 379, 463
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 1 cut(s) 896
BspANI GGCC 3 cut(s) 55, 613, 670
BspLI GGNNCC 3 cut(s) 192, 660, 669
BspMAI CTGCAG 3 cut(s) 652, 754, 955
BspPI GGATC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 976
BsrI ACTGG 2 cut(s) 186, 675
BssECI CCNNGG 2 cut(s) 251, 777
BssMI GATC 3 cut(s) 262, 379, 463
BssNAI GTATAC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 777
Bst1107I GTATAC 1 cut(s) 299
Bst2UI CCWGG 3 cut(s) 128, 294, 580
Bst4CI ACNGT 1 cut(s) 882
Bst6I CTCTTC 1 cut(s) 974
BstC8I GCNNGC 3 cut(s) 611, 719, 852
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 3 cut(s) 265, 382, 466
BstMAI GTCTC 2 cut(s) 777, 976
BstMBI GATC 3 cut(s) 262, 379, 463
BstMWI GCNNNNNNNGC 8 cut(s) 40, 52, 443, 452, 560, 592, 667, 860
BstNI CCWGG 3 cut(s) 128, 294, 580
BstSCI CCNGG 3 cut(s) 126, 292, 578
BstSFI CTRYAG 4 cut(s) 356, 648, 750, 951
BstV1I GCAGC 7 cut(s) 43, 55, 662, 736, 764, 937, 965
BstV2I GAAGAC 1 cut(s) 741
BstZ17I GTATAC 1 cut(s) 299
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 3 cut(s) 55, 613, 670
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 946
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 179, 682, 765
Cac8I GCNNGC 3 cut(s) 611, 719, 852
Cfr13I GGNCC 2 cut(s) 190, 668
CseI GACGC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 623, 778
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 23
DpnI GATC 3 cut(s) 264, 381, 465
DpnII GATC 3 cut(s) 262, 379, 463
Eam1104I CTCTTC 1 cut(s) 974
EarI CTCTTC 1 cut(s) 974
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 777
Eco147I AGGCCT 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 837
Eco31I GGTCTC 1 cut(s) 976
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 861
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 835
EcoO109I RGGNCCY 2 cut(s) 190, 668
EcoRII CCWGG 3 cut(s) 126, 292, 578
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 2 cut(s) 626, 781
FaiI YATR 9 cut(s) 222, 288, 299, 343, 390, 624, 779, 927, 997
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 500, 532
FaqI GGGAC 2 cut(s) 47, 804
FatI CATG 2 cut(s) 622, 777
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 8 cut(s) 32, 44, 651, 750, 753, 896, 951, 954
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 8 cut(s) 32, 44, 651, 750, 753, 896, 951, 954
FspBI CTAG 3 cut(s) 587, 695, 971
GluI GCNGC 8 cut(s) 32, 44, 651, 750, 753, 896, 951, 954
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 3 cut(s) 55, 613, 670
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 461
Hin1II CATG 2 cut(s) 626, 781
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 2 cut(s) 710, 770
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 374, 793
Hpy166II GTNNAC 2 cut(s) 299, 476
Hpy188I TCNGA 1 cut(s) 841
Hpy188III TCNNGA 5 cut(s) 269, 482, 695, 797, 827
Hpy8I GTNNAC 2 cut(s) 299, 476
Hpy99I CGWCG 2 cut(s) 98, 199
HpyAV CCTTC 4 cut(s) 106, 169, 548, 681
HpyCH4III ACNGT 1 cut(s) 882
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 9 cut(s) 259, 392, 437, 563, 650, 752, 863, 938, 953
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 52, 443, 452, 560, 592, 667, 860
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 945
Hsp92II CATG 2 cut(s) 626, 781
Kzo9I GATC 3 cut(s) 262, 379, 463
LmnI GCTCC 2 cut(s) 184, 658
Lsp1109I GCAGC 7 cut(s) 43, 55, 662, 736, 764, 937, 965
LweI GCATC 3 cut(s) 700, 764, 872
MaeI CTAG 3 cut(s) 587, 695, 971
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 2 cut(s) 409, 499
MalI GATC 3 cut(s) 264, 381, 465
MboI GATC 3 cut(s) 262, 379, 463
MboII GAAGA 8 cut(s) 49, 326, 473, 520, 638, 746, 854, 991
MhlI GDGCHC 1 cut(s) 837
MluCI AATT 2 cut(s) 602, 642
MlyI GAGTC 1 cut(s) 779
MmeI TCCRAC 2 cut(s) 271, 747
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 3 cut(s) 6, 605, 809
MslI CAYNNNNRTG 2 cut(s) 387, 798
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 128, 294, 580
MvaI CCWGG 3 cut(s) 128, 294, 580
MwoI GCNNNNNNNGC 8 cut(s) 40, 52, 443, 452, 560, 592, 667, 860
NcoI CCATGG 1 cut(s) 777
NdeII GATC 3 cut(s) 262, 379, 463
NlaIII CATG 2 cut(s) 626, 781
NlaIV GGNNCC 3 cut(s) 192, 660, 669
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 865
PceI AGGCCT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 710
PflFI GACNNNGTC 1 cut(s) 471
PfoI TCCNGGA 1 cut(s) 578
PkrI GCNGC 8 cut(s) 33, 45, 652, 751, 754, 897, 952, 955
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 3 cut(s) 126, 292, 578
PspGI CCWGG 3 cut(s) 126, 292, 578
PspN4I GGNNCC 3 cut(s) 192, 660, 669
PspPI GGNCC 2 cut(s) 190, 668
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 3 cut(s) 652, 754, 955
PsyI GACNNNGTC 1 cut(s) 471
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 387, 798
SacI GAGCTC 1 cut(s) 837
SaqAI TTAA 3 cut(s) 6, 605, 809
SatI GCNGC 8 cut(s) 32, 44, 651, 750, 753, 896, 951, 954
Sau3AI GATC 3 cut(s) 262, 379, 463
Sau96I GGNCC 2 cut(s) 190, 668
SchI GAGTC 1 cut(s) 779
ScrFI CCNGG 3 cut(s) 128, 294, 580
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 3 cut(s) 700, 764, 872
SfcI CTRYAG 4 cut(s) 356, 648, 750, 951
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 387, 798
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 602, 642
SseBI AGGCCT 1 cut(s) 55
SsiI CCGC 1 cut(s) 896
SspMI CTAG 3 cut(s) 587, 695, 971
SstI GAGCTC 1 cut(s) 837
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 3 cut(s) 126, 292, 578
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 1 cut(s) 882
TaiI ACGT 1 cut(s) 948
TaqI TCGA 2 cut(s) 204, 466
TaqII GACCGA 1 cut(s) 722
TasI AATT 2 cut(s) 602, 642
TauI GCSGC 1 cut(s) 898
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 3 cut(s) 6, 605, 809
Tru9I TTAA 3 cut(s) 6, 605, 809
TscAI CASTG 3 cut(s) 186, 682, 765
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 7 cut(s) 31, 43, 650, 749, 752, 950, 953
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 245, 639, 816
TspRI CASTG 3 cut(s) 186, 682, 765
Tth111I GACNNNGTC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 3 cut(s) 587, 695, 971
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.