Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Reverse (-)

28906635 .. 28910224

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGAGATTCAAGTGCCATCAGCTCGATCTTAAGTCCATTGATAGTTTAATCAAATTTGACAAGCCCAGATGTAGGCTCAAGGCAGCTGAAGTTTATTCGTCATTGCCATGTCATGATGATGATGACGTCTCTGATTTGGACAACACAATTCGGAAGCGTCTATCTGAAAACCATTGCAATTACTGTTCTTGTTCTCTTCCTAATGTATACTATCAGTCACAGAAGGAGGTTGATGTACTGCTGTGCTCTAATTGCTTCCACGAGGGAAGATATGTTGTTGGTCATTCAAGCATAGATTTCATAAGGATGGATTCAACAAAAGATTATGGTGATCTGGATGGGGAAAGTTGTGTGACAGATGATCAAGAAACCCTACTGCTGCTCGAGGCAATGGAAATACACAATGAGAACTGGAATGAAATTGCTGAGTATGTTGGTTCAAAGTCAAAAGCACAATGCATCCTTCATTTTCTTCGTTTGCCTGTTGAGGATGGCCTGCTTGAAAATATTGAAGTTCCGGGCATGTCCCTGTCTTCCAATTCATTGGATAGAGATGGTCATGGAGGATTTCATTCAAGTTCAAATGGGGATGCAGCAGGATCCTGCCTACAAGATGCTGATTCTGATAATAGGTTCCCTTTTGCGAATTCTGGGAATCCAGTCATGGCCATGGTTTCATTTCTGGCCTCCTCTGTTGGGCCAAGAGTTGCTGCATCTTGTGCCCATGCAGCCTTGACTGTATTTTCTGAGGATAATGGTGTATCTGCCTCTGCAAGTATTATGGAAGGATCAGGCCATAGGACGAACTCTGAGAATATACAAGGTAGAGAAGGTGGTGCTCATGTAAATTCTGCAAATTTACTTCAGGGCGATTCCCATACCTGCAGAGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

300

Amino Acids

32.65

Weight (kDa)

4.86

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	122 - 160	3.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	210
AclWI	GGATC	3 cut(s)	597, 610, 799
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	4 cut(s)	56, 649, 850, 859
AcuI	CTGAAG	2 cut(s)	111, 851
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	75, 699
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	8 cut(s)	13, 291, 318, 444, 506, 515, 579, 585
AluBI	AGCT	2 cut(s)	25, 89
AluI	AGCT	2 cut(s)	25, 89
Alw21I	GWGCWC	2 cut(s)	251, 844
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	3 cut(s)	597, 610, 799
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	5 cut(s)	496, 669, 687, 701, 796
ApeKI	GCWGC	5 cut(s)	86, 382, 596, 713, 731
ApoI	RAATTY	4 cut(s)	56, 649, 850, 859
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	16, 344
AvaI	CYCGRG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	727
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	251, 844
BbvI	GCAGC	5 cut(s)	98, 369, 608, 700, 743
BccI	CCATC	5 cut(s)	27, 304, 335, 488, 551
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	886
BfrI	CTTAAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	893
BisI	GCNGC	5 cut(s)	87, 383, 597, 714, 732
BlsI	GCNGC	5 cut(s)	88, 384, 598, 715, 733
Bme1390I	CCNGG	1 cut(s)	522
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	604, 638
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	4 cut(s)	471, 583, 607, 725
BpiI	GAAGAC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 699
Bse1I	ACTGG	2 cut(s)	419, 662
Bse3DI	GCAATG	3 cut(s)	104, 175, 399
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	5 cut(s)	315, 346, 462, 499, 598
BseLI	CCNNNNNNNGG	2 cut(s)	75, 699
BseMI	GCAATG	3 cut(s)	104, 175, 399
BseMII	CTCAG	3 cut(s)	420, 741, 804
BseNI	ACTGG	2 cut(s)	419, 662
BseRI	GAGGAG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	727
BseXI	GCAGC	5 cut(s)	98, 369, 608, 700, 743
BshFI	GGCC	5 cut(s)	498, 671, 689, 703, 798
BsiHKAI	GWGCWC	2 cut(s)	251, 844
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	75, 699
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	5 cut(s)	498, 671, 689, 703, 798
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	251, 727, 844
Bsp143I	GATC	5 cut(s)	28, 334, 364, 602, 791
Bsp19I	CCATGG	1 cut(s)	672
BspANI	GGCC	5 cut(s)	498, 671, 689, 703, 798
BspCNI	CTCAG	3 cut(s)	421, 742, 805
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	604, 638
BspMAI	CTGCAG	1 cut(s)	890
BspMI	ACCTGC	1 cut(s)	893
BspPI	GGATC	3 cut(s)	597, 610, 799
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	3 cut(s)	104, 175, 399
BsrI	ACTGG	2 cut(s)	419, 662
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	5 cut(s)	28, 334, 364, 602, 791
BssNAI	GTATAC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	672
Bst1107I	GTATAC	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	188, 742
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	429, 750, 813
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	5 cut(s)	315, 346, 462, 499, 598
BstKTI	GATC	5 cut(s)	31, 337, 367, 605, 794
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	5 cut(s)	28, 334, 364, 602, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 722, 731
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	1 cut(s)	886
BstSLI	GKGCMC	1 cut(s)	727
BstV1I	GCAGC	5 cut(s)	98, 369, 608, 700, 743
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	602
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	602
BstZ17I	GTATAC	1 cut(s)	211
BsuRI	GGCC	5 cut(s)	498, 671, 689, 703, 798
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	5 cut(s)	315, 346, 462, 499, 598
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	1 cut(s)	500
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	701
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	8 cut(s)	111, 116, 526, 563, 667, 673, 728, 845
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	3 cut(s)	429, 750, 813
DpnI	GATC	5 cut(s)	30, 336, 366, 604, 793
DpnII	GATC	5 cut(s)	28, 334, 364, 602, 791
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	111, 851
Eco88I	CYCGRG	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	8 cut(s)	114, 119, 529, 566, 670, 676, 731, 848
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	8 cut(s)	110, 115, 525, 562, 666, 672, 727, 844
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	87, 383, 597, 714, 732
FokI	GGATG	5 cut(s)	322, 353, 449, 506, 605
Fsp4HI	GCNGC	5 cut(s)	87, 383, 597, 714, 732
GluI	GCNGC	5 cut(s)	87, 383, 597, 714, 732
HaeIII	GGCC	5 cut(s)	498, 671, 689, 703, 798
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	8 cut(s)	114, 119, 529, 566, 670, 676, 731, 848
HinfI	GANTC	5 cut(s)	9, 314, 623, 658, 875
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	2 cut(s)	16, 344
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	6 cut(s)	136, 156, 169, 628, 751, 814
Hpy188III	TCNNGA	3 cut(s)	116, 338, 368
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	220, 476, 782, 827
HpyCH4III	ACNGT	2 cut(s)	188, 742
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	180, 462, 596, 716, 731, 776, 857, 888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 722, 731
HpyF3I	CTNAG	3 cut(s)	429, 750, 813
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	8 cut(s)	114, 119, 529, 566, 670, 676, 731, 848
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	28, 334, 364, 602, 791
Lsp1109I	GCAGC	5 cut(s)	98, 369, 608, 700, 743
LweI	GCATC	4 cut(s)	471, 583, 607, 725
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	219, 355
MalI	GATC	5 cut(s)	30, 336, 366, 604, 793
MboI	GATC	5 cut(s)	28, 334, 364, 602, 791
MboII	GAAGA	4 cut(s)	191, 282, 467, 528
MflI	RGATCY	1 cut(s)	602
MhlI	GDGCHC	3 cut(s)	251, 727, 844
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	9 cut(s)	56, 150, 181, 253, 423, 541, 649, 850, 859
MluNI	TGGCCA	1 cut(s)	671
MnlI	CCTC	9 cut(s)	223, 259, 382, 484, 560, 700, 703, 745, 781
Mox20I	TGGCCA	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	3 cut(s)	33, 50, 898
MslI	CAYNNNNRTG	4 cut(s)	109, 120, 308, 671
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	255, 722, 731
NciI	CCSGG	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	5 cut(s)	28, 334, 364, 602, 791
NlaIII	CATG	8 cut(s)	114, 119, 529, 566, 670, 676, 731, 848
NlaIV	GGNNCC	2 cut(s)	604, 638
NmuCI	GTSAC	2 cut(s)	219, 355
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	9, 314, 623, 658, 875
PkrI	GCNGC	5 cut(s)	88, 384, 598, 715, 733
PspN4I	GGNNCC	2 cut(s)	604, 638
PspPI	GGNCC	1 cut(s)	701
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	4 cut(s)	109, 120, 308, 671
SaqAI	TTAA	3 cut(s)	33, 50, 898
SatI	GCNGC	5 cut(s)	87, 383, 597, 714, 732
Sau3AI	GATC	5 cut(s)	28, 334, 364, 602, 791
Sau96I	GGNCC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	3 cut(s)	251, 727, 844
SetI	ASST	8 cut(s)	27, 91, 132, 234, 638, 829, 838, 887
SfaNI	GCATC	4 cut(s)	471, 583, 607, 725
SfcI	CTRYAG	1 cut(s)	886
Sfr274I	CTCGAG	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	4 cut(s)	109, 120, 308, 671
SmlI	CTYRAG	3 cut(s)	32, 80, 386
SmoI	CTYRAG	3 cut(s)	32, 80, 386
Sse9I	AATT	9 cut(s)	56, 150, 181, 253, 423, 541, 649, 850, 859
SspI	AATATT	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	188, 742
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	27, 387
TasI	AATT	9 cut(s)	56, 150, 181, 253, 423, 541, 649, 850, 859
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	5 cut(s)	9, 314, 623, 658, 875
Tru1I	TTAA	3 cut(s)	33, 50, 898
Tru9I	TTAA	3 cut(s)	33, 50, 898
TseFI	GTSAC	2 cut(s)	219, 355
TseI	GCWGC	5 cut(s)	86, 382, 596, 713, 731
Tsp45I	GTSAC	2 cut(s)	219, 355
TspDTI	ATGAA	6 cut(s)	292, 435, 458, 534, 563, 669
Vha464I	CTTAAG	1 cut(s)	32
XapI	RAATTY	4 cut(s)	56, 649, 850, 859
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.