Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

30611371 .. 30611976

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGACGGGGAGGCTAACCTTCCAGTCCGACCCGCTGCGGCGAGGAATTTGATCCGTCCGGTCAACCTGGATTCCACATCGTCATCGTCTTCGTCGTTCTCGTCCTCCTCCCCACCGAACTTTCTCCGGAATGTCCAGGCGGCCTTCAAGCGACACCGCCCTCTCGTGAATGTACCCTTAAAAATTCTCCAAGTGCTGATTTCGAGAAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

72

Amino Acids

7.75

Weight (kDa)

11.88

Isoelectric Point (pI)

87.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	4 cut(s)	33, 38, 140, 157
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	46, 183
AfaI	GTAC	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	66, 135
AlwI	GGATC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	46, 183
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	68, 137
BisI	GCNGC	3 cut(s)	36, 39, 141
BlsI	GCNGC	3 cut(s)	37, 40, 142
Bme1390I	CCNGG	2 cut(s)	68, 137
BmrFI	CCNGG	2 cut(s)	68, 137
BpiI	GAAGAC	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	58, 126
Bse1I	ACTGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	68, 137
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	59, 127
BsnI	GGCC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	4 cut(s)	33, 38, 140, 157
BspANI	GGCC	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	126
BspPI	GGATC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	68, 137
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	68, 137
BstSCI	CCNGG	2 cut(s)	66, 135
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	173
CviJI	RGCY	2 cut(s)	14, 143
CviKI_1	RGCY	2 cut(s)	14, 143
CviQI	GTAC	1 cut(s)	173
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	66, 135
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	36, 39, 141
Fsp4HI	GCNGC	3 cut(s)	36, 39, 141
GluI	GCNGC	3 cut(s)	36, 39, 141
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	59, 127
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	59, 127
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	127, 166, 204
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	29, 154
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	7 cut(s)	36, 53, 72, 80, 122, 140, 149
Lsp1109I	GCAGC	1 cut(s)	22
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	81
MluCI	AATT	2 cut(s)	46, 183
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	4, 36, 115, 118, 171
MroI	TCCGGA	1 cut(s)	126
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	59, 127
MspR9I	CCNGG	2 cut(s)	68, 137
MvaI	CCWGG	2 cut(s)	68, 137
NdeII	GATC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 98
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	37, 40, 142
Psp6I	CCWGG	2 cut(s)	66, 135
PspGI	CCWGG	2 cut(s)	66, 135
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	36, 39, 141
Sau3AI	GATC	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	68, 137
SetI	ASST	2 cut(s)	21, 69
Sse9I	AATT	2 cut(s)	46, 183
SsiI	CCGC	4 cut(s)	33, 38, 140, 157
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	66, 135
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	46, 183
TauI	GCSGC	2 cut(s)	41, 143
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	44
XapI	RAATTY	2 cut(s)	46, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.