Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

25819127 .. 25819644

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGGCGTCTCCGAGTTTCTCGGAGCGACTTGGGTTTTCGCAACCTAGGTTTCGATTTGGCGGCGGCGAGCTTCCCTCAGGCAAGACAATCTGTCCTCAGGCAAGGCGGCGATTGTGGAGGGCAAAGATGCGATGGCGCGGGGCGGGGTCTCTGTGTTGATGGTGCGGTGCGGCGCGAGGTTTCTGGGTTGGAGGCCTCGCTGACCGTGTTTTTTGCTGGATTGGATCCGGTCTTCGAGCGCCGTACAGCGTCGACGGTGATTGTCGGCTCTGAGCCCGGCAGTAGTCAAGGCCGGTGGCTGGGATATGTAGATGGATGCTTTGATCTGGACGTCGCCGTTCTGAGACGCGGTGACTCACGGCGATTTTCAGCCGGCTGTTTTCATCCAGACGTCGGTGGACAGTTTGATGAGATGGGCAGGAAGGTCGCCGGAATTGATGGCGGCGAAGTGGCGGCAGAGGAGCTGGGCTCCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.85

Weight (kDa)

5.86

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	336, 396
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	3 cut(s)	140, 177, 351
AclWI	GGATC	2 cut(s)	221, 234
AcyI	GRCGYC	3 cut(s)	7, 333, 393
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	301, 395
AhdI	GACNNNNNGTC	1 cut(s)	92
AluBI	AGCT	2 cut(s)	72, 466
AluI	AGCT	2 cut(s)	72, 466
Alw26I	GTCTC	3 cut(s)	14, 155, 340
AlwI	GGATC	2 cut(s)	221, 234
AoxI	GGCC	2 cut(s)	195, 292
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	3 cut(s)	140, 177, 243
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	271, 365
AvrII	CCTAGG	1 cut(s)	46
AxyI	CCTNAGG	2 cut(s)	78, 98
BamHI	GGATCC	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	279, 473
BbsI	GAAGAC	1 cut(s)	226
BccI	CCATC	5 cut(s)	128, 155, 308, 409, 434
BceAI	ACGGC	3 cut(s)	228, 323, 377
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	14, 155, 340
BfaI	CTAG	2 cut(s)	47, 478
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	6 cut(s)	63, 66, 109, 173, 445, 456
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	6 cut(s)	64, 67, 110, 174, 446, 457
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	228, 472
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	119, 308
BpiI	GAAGAC	1 cut(s)	226
BplI	GAGNNNNNCTC	3 cut(s)	61, 93, 455
BpuMI	CCSGG	1 cut(s)	279
BsaHI	GRCGYC	3 cut(s)	7, 333, 393
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 395
Bse118I	RCCGGY	2 cut(s)	294, 374
Bse21I	CCTNAGG	2 cut(s)	78, 98
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	323, 385
BseLI	CCNNNNNNNGG	2 cut(s)	301, 395
BseMII	CTCAG	4 cut(s)	92, 112, 264, 335
BseRI	GAGGAG	1 cut(s)	476
BseYI	CCCAGC	2 cut(s)	301, 466
Bsh1236I	CGCG	3 cut(s)	140, 177, 351
BshFI	GGCC	2 cut(s)	197, 294
BsiSI	CCGG	5 cut(s)	230, 279, 295, 375, 432
BslI	CCNNNNNNNGG	2 cut(s)	301, 395
BsmAI	GTCTC	3 cut(s)	14, 155, 340
BsmBI	CGTCTC	2 cut(s)	14, 340
BsnI	GGCC	2 cut(s)	197, 294
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	279, 473
Bsp143I	GATC	2 cut(s)	226, 325
BspANI	GGCC	2 cut(s)	197, 294
BspCNI	CTCAG	4 cut(s)	91, 111, 265, 336
BspFNI	CGCG	3 cut(s)	140, 177, 351
BspLI	GGNNCC	2 cut(s)	228, 472
BspPI	GGATC	2 cut(s)	221, 234
BspTNI	GGTCTC	1 cut(s)	155
BsrFI	RCCGGY	2 cut(s)	294, 374
BssAI	RCCGGY	2 cut(s)	294, 374
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	226, 325
BssNI	GRCGYC	3 cut(s)	7, 333, 393
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	208, 259, 405
BstACI	GRCGYC	3 cut(s)	7, 333, 393
BstC8I	GCNNGC	2 cut(s)	70, 376
BstDEI	CTNAG	4 cut(s)	78, 98, 273, 344
BstF5I	GGATG	2 cut(s)	323, 385
BstFNI	CGCG	3 cut(s)	140, 177, 351
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	3 cut(s)	140, 177, 243
BstKTI	GATC	2 cut(s)	229, 328
BstMAI	GTCTC	3 cut(s)	14, 155, 340
BstMBI	GATC	2 cut(s)	226, 325
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	3 cut(s)	140, 177, 351
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	2 cut(s)	78, 98
BsuRI	GGCC	2 cut(s)	197, 294
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	323, 385
Cac8I	GCNNGC	2 cut(s)	70, 376
CfoI	GCGC	3 cut(s)	140, 177, 243
Cfr10I	RCCGGY	2 cut(s)	294, 374
CseI	GACGC	2 cut(s)	240, 357
Csp6I	GTAC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	4 cut(s)	78, 98, 273, 344
DpnI	GATC	2 cut(s)	228, 327
DpnII	GATC	2 cut(s)	226, 325
DriI	GACNNNNNGTC	1 cut(s)	92
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	279, 473
Eco31I	GGTCTC	1 cut(s)	155
Eco81I	CCTNAGG	2 cut(s)	78, 98
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	2 cut(s)	279, 473
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	2 cut(s)	14, 340
FaiI	YATR	1 cut(s)	309
FauI	CCCGC	2 cut(s)	133, 138
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	6 cut(s)	63, 66, 109, 173, 445, 456
FokI	GGATG	2 cut(s)	330, 372
FriOI	GRGCYC	2 cut(s)	279, 473
Fsp4HI	GCNGC	6 cut(s)	63, 66, 109, 173, 445, 456
FspBI	CTAG	2 cut(s)	47, 478
GlaI	GCGC	3 cut(s)	139, 176, 242
GluI	GCNGC	6 cut(s)	63, 66, 109, 173, 445, 456
GsaI	CCCAGC	2 cut(s)	305, 470
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	197, 294
HapII	CCGG	5 cut(s)	230, 279, 295, 375, 432
HgaI	GACGC	2 cut(s)	240, 357
HhaI	GCGC	3 cut(s)	140, 177, 243
Hin1I	GRCGYC	3 cut(s)	7, 333, 393
Hin6I	GCGC	3 cut(s)	138, 175, 241
HinP1I	GCGC	3 cut(s)	138, 175, 241
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	5 cut(s)	230, 279, 295, 375, 432
HphI	GGTGA	2 cut(s)	271, 365
Hpy166II	GTNNAC	2 cut(s)	255, 401
Hpy188I	TCNGA	4 cut(s)	14, 24, 274, 345
Hpy188III	TCNNGA	2 cut(s)	329, 389
Hpy8I	GTNNAC	2 cut(s)	255, 401
Hpy99I	CGWCG	4 cut(s)	256, 259, 338, 398
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	208, 259, 405
HpyCH4IV	ACGT	2 cut(s)	333, 393
HpyF3I	CTNAG	4 cut(s)	78, 98, 273, 344
HpySE526I	ACGT	2 cut(s)	333, 393
Hsp92I	GRCGYC	3 cut(s)	7, 333, 393
HspAI	GCGC	3 cut(s)	138, 175, 241
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	226, 325
LmnI	GCTCC	3 cut(s)	24, 463, 476
LweI	GCATC	2 cut(s)	119, 308
MaeI	CTAG	2 cut(s)	47, 478
MaeII	ACGT	2 cut(s)	333, 393
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	228, 327
MboI	GATC	2 cut(s)	226, 325
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	279, 473
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	87, 107, 113, 172, 187, 208, 454
MroNI	GCCGGC	1 cut(s)	374
MspI	CCGG	5 cut(s)	230, 279, 295, 375, 432
MspR9I	CCNGG	1 cut(s)	279
MvnI	CGCG	3 cut(s)	140, 177, 351
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	226, 325
NgoMIV	GCCGGC	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	228, 472
NmuCI	GTSAC	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	376
PkrI	GCNGC	6 cut(s)	64, 67, 110, 174, 446, 457
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspFI	CCCAGC	2 cut(s)	301, 466
PspN4I	GGNNCC	2 cut(s)	228, 472
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	253
SatI	GCNGC	6 cut(s)	63, 66, 109, 173, 445, 456
Sau3AI	GATC	2 cut(s)	226, 325
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	279, 473
SetI	ASST	8 cut(s)	48, 52, 74, 183, 336, 396, 429, 468
SfaNI	GCATC	2 cut(s)	119, 308
SgrDI	CGTCGACG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	197
SspMI	CTAG	2 cut(s)	47, 478
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	208, 259, 405
TaiI	ACGT	2 cut(s)	336, 396
TaqI	TCGA	3 cut(s)	54, 237, 254
TasI	AATT	1 cut(s)	435
TauI	GCSGC	6 cut(s)	65, 68, 111, 175, 447, 458
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	2 cut(s)	47, 478
ZraI	GACGTC	2 cut(s)	334, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.