Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

13106332 .. 13110717

Gene Structure 4386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGGACAGGGACGCCCGGAATTTGATGCGTCCGATCAACTCCGATTTCACTTCGTCGTCGTCGTCTTCCTCTAATTCCGACCTTTTCCGCAGCGTTCAGGCCGCGCTTAAGCGCCACCGCCCTCTAGAGACAAGCATAAGGCCTAAGCGCATGTTGGCTCCACGAAGAGAAGTAACTAAAAGTTCGGCTTCAAGTGCGACTCTCATTGACACAAAGAATTTGCGAGATGTAGCTACGCAGGGTCAGGATAATACTGCAAAGGAATCAATTGTGCAGCCACACGAGATGCCTACTATTGCCAAGGAAAGTCAGGAAGATGCATGCGTTACGGCAGTTTCCAATTCAAGCAGTATCACCCACACGTTTGATGAGAATTTAGATGTGCCCATAGATCAAATCAAGCCTGACATTGGTGCTAAAGATATGTCTTCCTGTCATTTTGAGTCTCAAGGGATTGATGCTCAAAAGAAGGTCCAATTTTCAATTGGAACTGGTGCTTCTTCCCTGGGGGCTGATGATAATATGGCCACTCAATCAGAGACCTTATCATCTCATATGCGTTCACTTGCATTGACAGAAATGGAGTGGGTTTCTACTAGTCAAGCAGAGGCATCAGCTGTCATAAATCATGATTCAAAGCATCAGAATATTCTGAATACAGAACTGGATAGCTGTTTGAAGTCTGATGGTGGGATTTCCTTGTTGGCAAAGAGAAAAACTGCCGCTCAAGATCAGTTGCATCAATTCAGGAACTTCTTAAGCCAGCCTATGACTCAATCCTCAGTTATTGGGCCATCGTGTGCTACTACAACGTCTGTCCATGCTACTTCAGCACCCATGTCAACAACTTATTGTTCTAGTTTGCCTAGTGGTTATCACGTGCCAGTAGAACCCTTGAAGGATTCTAATGTAATCCCTCAACCATCAAGTGCTACTTTAAGGGTCACCGGTGCAATGTCCTATCCCCAGATAGCTGTTGCAGCCCAACCTTCTACTTCTGCAGTTGATACCCAAAATGAAGGTAAGGAATATGGCCTTTCTAAGGAACAAAAAGGCTGCAAGCTGTTGGAGAGTGAATATCAGGAAAACCCTTCTCTTGCCGATGCGAAGCAAACTGAAGCTGAATTGTATGCAGGTGATGTTGTCAATGCACGATCTCAGGTTACTTTGCCCCCAAATTTATGTTCTGATACAAAGTCAGAGCCTTCAAAATCAGAAAAACAAGAAAAGGCTGCAAGTGGTAAAGTTGTTCCAGCTCCTCGTAAAAAAAATAAAGATTCTGACTTGTTTATTAAAGTAAATGGGAAGCTCTATCAGAGGCTTGGAAAAATAGGTAGTGGAGGCAGCAGTGAGGTCCACAAAGTTATATCATCAGACTGTACAATCTATGCTCTTAAGAAAATCAAGCTGAAAGGGCGTGACTATGCCACTGCTTTTGGTTTTTGTCAGGAAATCGAATATCTGAATAAGTTGAAAGGGAAGAACCACATCATACAGCTTATAGACTATGAGGTGACAGATAAGGCTTTACTGCATGCAGTATTGAGTGGCTCCATAAATAATAAAGATGGCAGAGTCAAGGATGATGGGTATATATACATGGTACTTGAATATGGAGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAAGGAAATGGATGGGTCGAATCAGACCATAGATGAGAACTGGCTACGATTCTACTGGCAGCAAATTCTTCTGGCAGTCAGCACCATACATGAAGAGCGAATTGTGCACTCCGACTTGAAGCCAGCTAATTTCCTGCTTGTTAGAGGCTCTCTTAAGCTTATTGATTTTGGGATTGCCAAAGCTATAATGAGTGATACAACTAACATCCAACGGGATTCTCAGGTGGGTACTCTAAGTTACATGTCTCCAGAGGCATTCATGTGCAATGAGACTGATGCAGATGGAAACACTATCAAGTGTGGCCGGCCATCAGACATTTGGTCCCTTGGTTGCATCCTTTATCAGATGGTATACGGGAGGACCCCGTTTGCAGACTACAAGACCTTCTGGGCCAAGTTCAAAGTTATAACAGATCCTAACCATCAAATTGCATATGAACCAGTCCCTAACCCTTGGCTTCTGGACCTTATGAGAAAGTGCCTTGCCTGGGACCGCAATGAAAGATGGAGGATCCCTGAGCTACTTCAGCACCCTTTTCTTGTTCCCCCAGTTCCAACCCAGCCATCTTCTCATGATCACAGCTGTAAATTGCTTCGACTTATTGGCCAAAATTGTACCAGTGATTCTGAAGCGTCGAAGCTTGTTTGTCAGCTTAAACAACTGCTTGAAGACCCTTTGCCATCCACAACGTCTCAGTTATTAACATCGTGTGACCAACAATGTACATTGCTCTCCCAAGTGTCAAAAGTTTGCCTCCAGCTCGAGGAACACTTACAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

812

Amino Acids

89.74

Weight (kDa)

6.26

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	438 - 731	1.7e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	444 - 727	8.1e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2060
AarI	CACCTGC	1 cut(s)	1124
Acc36I	ACCTGC	1 cut(s)	1124
AccBSI	CCGCTC	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	2004
AccII	CGCG	1 cut(s)	104
AciI	CCGC	5 cut(s)	88, 102, 118, 723, 2146
AclWI	GGATC	3 cut(s)	2060, 2158, 2171
AcoI	YGGCCR	4 cut(s)	525, 1954, 1958, 2257
AcsI	RAATTY	5 cut(s)	19, 217, 373, 1177, 1716
AcuI	CTGAAG	4 cut(s)	813, 1137, 2162, 2301
AcvI	CACGTG	1 cut(s)	880
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	5 cut(s)	1381, 1605, 1882, 2269, 2377
AfiI	CCNNNNNNNGG	5 cut(s)	410, 1042, 1650, 2140, 2416
AflII	CTTAAG	4 cut(s)	107, 757, 1394, 1805
AflIII	ACRYGT	2 cut(s)	360, 1893
AgeI	ACCGGT	1 cut(s)	947
AhdI	GACNNNNNGTC	1 cut(s)	1972
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	2 cut(s)	504, 2138
AjuI	GAANNNNNNNTTGG	2 cut(s)	1168, 1200
Alw21I	GWGCWC	1 cut(s)	1761
Alw26I	GTCTC	6 cut(s)	122, 450, 533, 1902, 1916, 2349
Alw44I	GTGCAC	1 cut(s)	1757
AlwI	GGATC	3 cut(s)	2060, 2158, 2171
Ama87I	CYCGRG	1 cut(s)	2414
AoxI	GGCC	9 cut(s)	99, 140, 525, 791, 1033, 1954, 1958, 2043, 2257
ApaLI	GTGCAC	1 cut(s)	1757
ApeKI	GCWGC	7 cut(s)	90, 274, 980, 1056, 1232, 1344, 1711
ApoI	RAATTY	5 cut(s)	19, 217, 373, 1177, 1716
AsiGI	ACCGGT	1 cut(s)	947
AspLEI	GCGC	3 cut(s)	106, 114, 150
AspS9I	GGNCC	8 cut(s)	472, 791, 1354, 1974, 2013, 2043, 2116, 2143
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	4 cut(s)	346, 937, 1148, 1525
AvaI	CYCGRG	1 cut(s)	2414
AvaII	GGWCC	6 cut(s)	472, 1354, 1974, 2013, 2116, 2143
BaeGI	GKGCMC	2 cut(s)	387, 1761
BalI	TGGCCA	2 cut(s)	527, 2259
BamHI	GGATCC	1 cut(s)	2163
BauI	CACGAG	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	880
BbsI	GAAGAC	3 cut(s)	57, 420, 2328
Bbv12I	GWGCWC	1 cut(s)	1761
BbvI	GCAGC	7 cut(s)	102, 286, 992, 1043, 1219, 1356, 1723
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	506, 2140
BclI	TGATCA	1 cut(s)	2227
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	6 cut(s)	122, 450, 533, 1902, 1916, 2349
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	125, 597, 858, 867
BfmI	CTRYAG	1 cut(s)	999
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	4 cut(s)	107, 757, 1394, 1805
BfuAI	ACCTGC	1 cut(s)	1124
BisI	GCNGC	9 cut(s)	91, 102, 275, 723, 981, 1057, 1233, 1345, 1712
BlsI	GCNGC	9 cut(s)	92, 103, 276, 724, 982, 1058, 1234, 1346, 1713
Bme1390I	CCNGG	3 cut(s)	16, 506, 2140
Bme18I	GGWCC	6 cut(s)	472, 1354, 1974, 2013, 2116, 2143
BmeRI	GACNNNNNGTC	1 cut(s)	1972
BmeT110I	CYCGRG	1 cut(s)	2414
BmgT120I	GGNCC	8 cut(s)	472, 791, 1354, 1974, 2013, 2043, 2116, 2143
BmiI	GGNNCC	6 cut(s)	159, 1552, 1976, 2015, 2144, 2165
BmrFI	CCNGG	3 cut(s)	16, 506, 2140
BmrI	ACTGGG	1 cut(s)	2195
BmuI	ACTGGG	1 cut(s)	2195
BpiI	GAAGAC	3 cut(s)	57, 420, 2328
BpmI	CTGGAG	2 cut(s)	1884, 2393
Bpu10I	CCTNAGC	2 cut(s)	144, 2169
BpuEI	CTTGAG	2 cut(s)	432, 711
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	880
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	6 cut(s)	300, 504, 505, 1978, 2105, 2139
BsaWI	WCCGGW	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 1042, 1650, 2140, 2416
Bse118I	RCCGGY	2 cut(s)	947, 1956
Bse1I	ACTGG	8 cut(s)	496, 669, 884, 1697, 1712, 2093, 2201, 2271
Bse3DI	GCAATG	4 cut(s)	960, 1924, 2155, 2378
BseBI	CCWGG	2 cut(s)	506, 2140
BseDI	CCNNGG	6 cut(s)	300, 504, 505, 1978, 2105, 2139
BseGI	GGATG	5 cut(s)	1588, 1669, 1857, 1986, 2333
BseLI	CCNNNNNNNGG	5 cut(s)	410, 1042, 1650, 2140, 2416
BseMI	GCAATG	4 cut(s)	960, 1924, 2155, 2378
BseMII	CTCAG	5 cut(s)	795, 1172, 1886, 2160, 2360
BseNI	ACTGG	8 cut(s)	496, 669, 884, 1697, 1712, 2093, 2201, 2271
BseRI	GAGGAG	1 cut(s)	1248
BseSI	GKGCMC	2 cut(s)	387, 1761
BseXI	GCAGC	7 cut(s)	102, 286, 992, 1043, 1219, 1356, 1723
BseYI	CCCAGC	1 cut(s)	2211
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	9 cut(s)	101, 142, 527, 793, 1035, 1956, 1960, 2045, 2259
BshTI	ACCGGT	1 cut(s)	947
BsiHKAI	GWGCWC	1 cut(s)	1761
BsiHKCI	CYCGRG	1 cut(s)	2414
BsiSI	CCGG	3 cut(s)	16, 948, 1957
BslFI	GGGAC	5 cut(s)	23, 1627, 1960, 2081, 2156
BslI	CCNNNNNNNGG	5 cut(s)	410, 1042, 1650, 2140, 2416
BsmAI	GTCTC	6 cut(s)	122, 450, 533, 1902, 1916, 2349
BsmBI	CGTCTC	1 cut(s)	2349
BsmFI	GGGAC	5 cut(s)	23, 1627, 1960, 2081, 2156
BsmI	GAATGC	1 cut(s)	1907
BsnI	GGCC	9 cut(s)	101, 142, 527, 793, 1035, 1956, 1960, 2045, 2259
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	2414
Bsp1286I	GDGCHC	2 cut(s)	387, 1761
Bsp1407I	TGTACA	2 cut(s)	1379, 2375
Bsp143I	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
BspACI	CCGC	5 cut(s)	88, 102, 118, 723, 2146
BspANI	GGCC	9 cut(s)	101, 142, 527, 793, 1035, 1956, 1960, 2045, 2259
BspCNI	CTCAG	5 cut(s)	794, 1171, 1885, 2161, 2359
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	2 cut(s)	628, 2224
BspLI	GGNNCC	6 cut(s)	159, 1552, 1976, 2015, 2144, 2165
BspMAI	CTGCAG	1 cut(s)	1003
BspMI	ACCTGC	1 cut(s)	1124
BspPI	GGATC	3 cut(s)	2060, 2158, 2171
BspQI	GCTCTTC	1 cut(s)	1740
BspTI	CTTAAG	4 cut(s)	107, 757, 1394, 1805
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	725
BsrDI	GCAATG	4 cut(s)	960, 1924, 2155, 2378
BsrFI	RCCGGY	2 cut(s)	947, 1956
BsrGI	TGTACA	2 cut(s)	1379, 2375
BsrI	ACTGG	8 cut(s)	496, 669, 884, 1697, 1712, 2093, 2201, 2271
BssAI	RCCGGY	2 cut(s)	947, 1956
BssECI	CCNNGG	6 cut(s)	300, 504, 505, 1978, 2105, 2139
BssMI	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
BssNAI	GTATAC	1 cut(s)	2005
BssNI	GRCGYC	1 cut(s)	12
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	3 cut(s)	300, 1978, 2105
Bst1107I	GTATAC	1 cut(s)	2005
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	506, 2140
Bst4CI	ACNGT	1 cut(s)	1379
Bst6I	CTCTTC	2 cut(s)	160, 1740
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	4 cut(s)	107, 757, 1394, 1805
BstAUI	TGTACA	2 cut(s)	1379, 2375
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	6 cut(s)	322, 764, 1061, 1536, 1776, 1958
BstDEI	CTNAG	8 cut(s)	144, 781, 1041, 1158, 1872, 1886, 2169, 2346
BstEII	GGTNACC	1 cut(s)	943
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstF5I	GGATG	5 cut(s)	1588, 1669, 1857, 1986, 2333
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	106, 114, 150
BstKTI	GATC	7 cut(s)	36, 394, 733, 1157, 2068, 2166, 2230
BstMAI	GTCTC	6 cut(s)	122, 450, 533, 1902, 1916, 2349
BstMBI	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 830, 980, 1414, 1756, 2179
BstNI	CCWGG	2 cut(s)	506, 2140
BstNSI	RCATGY	5 cut(s)	154, 324, 1538, 1639, 1897
BstPI	GGTNACC	1 cut(s)	943
BstSCI	CCNGG	3 cut(s)	14, 504, 2138
BstSFI	CTRYAG	1 cut(s)	999
BstSLI	GKGCMC	2 cut(s)	387, 1761
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	7 cut(s)	102, 286, 992, 1043, 1219, 1356, 1723
BstV2I	GAAGAC	3 cut(s)	57, 420, 2328
BstX2I	RGATCY	2 cut(s)	2065, 2163
BstYI	RGATCY	2 cut(s)	2065, 2163
BstZ17I	GTATAC	1 cut(s)	2005
BsuRI	GGCC	9 cut(s)	101, 142, 527, 793, 1035, 1956, 1960, 2045, 2259
BtsCI	GGATG	5 cut(s)	1588, 1669, 1857, 1986, 2333
BtsI	GCAGTG	2 cut(s)	1354, 1428
BtsIMutI	CAGTG	3 cut(s)	1354, 1428, 2278
BveI	ACCTGC	1 cut(s)	1124
Cac8I	GCNNGC	6 cut(s)	322, 764, 1061, 1536, 1776, 1958
CciI	TCATGA	2 cut(s)	628, 2224
CfoI	GCGC	3 cut(s)	106, 114, 150
Cfr10I	RCCGGY	2 cut(s)	947, 1956
Cfr13I	GGNCC	8 cut(s)	472, 791, 1354, 1974, 2013, 2043, 2116, 2143
CseI	GACGC	3 cut(s)	17, 20, 2274
Csp6I	GTAC	5 cut(s)	1380, 1604, 1881, 2268, 2376
CspAI	ACCGGT	1 cut(s)	947
CspCI	CAANNNNNGTGG	2 cut(s)	1417, 1452
CviQI	GTAC	5 cut(s)	1380, 1604, 1881, 2268, 2376
DdeI	CTNAG	8 cut(s)	144, 781, 1041, 1158, 1872, 1886, 2169, 2346
DpnI	GATC	7 cut(s)	35, 393, 732, 1156, 2067, 2165, 2229
DpnII	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
DriI	GACNNNNNGTC	1 cut(s)	1972
EaeI	YGGCCR	4 cut(s)	525, 1954, 1958, 2257
Eam1104I	CTCTTC	2 cut(s)	160, 1740
Eam1105I	GACNNNNNGTC	1 cut(s)	1972
EarI	CTCTTC	2 cut(s)	160, 1740
Eco130I	CCWWGG	3 cut(s)	300, 1978, 2105
Eco147I	AGGCCT	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	6 cut(s)	472, 1354, 1974, 2013, 2116, 2143
Eco57I	CTGAAG	4 cut(s)	813, 1137, 2162, 2301
Eco72I	CACGTG	1 cut(s)	880
Eco88I	CYCGRG	1 cut(s)	2414
Eco91I	GGTNACC	1 cut(s)	943
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoO109I	RGGNCCY	1 cut(s)	2013
EcoO65I	GGTNACC	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	504, 2138
EcoT14I	CCWWGG	3 cut(s)	300, 1978, 2105
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	3 cut(s)	300, 1978, 2105
Esp3I	CGTCTC	1 cut(s)	2349
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 919, 951
FaqI	GGGAC	5 cut(s)	23, 1627, 1960, 2081, 2156
FauNDI	CATATG	2 cut(s)	555, 2086
FbaI	TGATCA	1 cut(s)	2227
FblI	GTMKAC	1 cut(s)	2004
Fnu4HI	GCNGC	9 cut(s)	91, 102, 275, 723, 981, 1057, 1233, 1345, 1712
FokI	GGATG	5 cut(s)	1595, 1676, 1844, 1973, 2320
FseI	GGCCGGCC	1 cut(s)	1960
Fsp4HI	GCNGC	9 cut(s)	91, 102, 275, 723, 981, 1057, 1233, 1345, 1712
FspBI	CTAG	4 cut(s)	125, 597, 858, 867
GlaI	GCGC	3 cut(s)	105, 113, 149
GluI	GCNGC	9 cut(s)	91, 102, 275, 723, 981, 1057, 1233, 1345, 1712
GsaI	CCCAGC	1 cut(s)	2215
GsuI	CTGGAG	2 cut(s)	1884, 2393
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	9 cut(s)	101, 142, 527, 793, 1035, 1956, 1960, 2045, 2259
HapII	CCGG	3 cut(s)	16, 948, 1957
HgaI	GACGC	3 cut(s)	17, 20, 2274
HhaI	GCGC	3 cut(s)	106, 114, 150
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	3 cut(s)	104, 112, 148
HinP1I	GCGC	3 cut(s)	104, 112, 148
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HindIII	AAGCTT	2 cut(s)	1808, 2291
HpaII	CCGG	3 cut(s)	16, 948, 1957
HphI	GGTGA	4 cut(s)	346, 937, 1148, 1525
Hpy166II	GTNNAC	5 cut(s)	563, 843, 1357, 1759, 2005
Hpy8I	GTNNAC	5 cut(s)	563, 843, 1357, 1759, 2005
Hpy99I	CGWCG	4 cut(s)	58, 61, 64, 2290
HpyAV	CCTTC	8 cut(s)	463, 892, 999, 1013, 1101, 1215, 1648, 2047
HpyCH4III	ACNGT	1 cut(s)	1379
HpyCH4IV	ACGT	4 cut(s)	362, 812, 879, 2342
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 830, 980, 1414, 1756, 2179
HpyF3I	CTNAG	8 cut(s)	144, 781, 1041, 1158, 1872, 1886, 2169, 2346
HpySE526I	ACGT	4 cut(s)	362, 812, 879, 2342
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	3 cut(s)	104, 112, 148
KroI	GCCGGC	1 cut(s)	1956
KroNI	GCCGGC	1 cut(s)	1958
Ksp22I	TGATCA	1 cut(s)	2227
Kzo9I	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
LguI	GCTCTTC	1 cut(s)	1740
LmnI	GCTCC	3 cut(s)	163, 1261, 1556
Lsp1109I	GCAGC	7 cut(s)	102, 286, 992, 1043, 1219, 1356, 1723
MaeI	CTAG	4 cut(s)	125, 597, 858, 867
MaeII	ACGT	4 cut(s)	362, 812, 879, 2342
MaeIII	GTNAC	8 cut(s)	172, 325, 943, 1162, 1418, 1513, 1889, 2363
MalI	GATC	7 cut(s)	35, 393, 732, 1156, 2067, 2165, 2229
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
MfeI	CAATTG	2 cut(s)	267, 483
MflI	RGATCY	2 cut(s)	2065, 2163
MhlI	GDGCHC	2 cut(s)	387, 1761
MlsI	TGGCCA	2 cut(s)	527, 2259
MluNI	TGGCCA	2 cut(s)	527, 2259
MlyI	GAGTC	4 cut(s)	193, 452, 766, 1584
MmeI	TCCRAC	5 cut(s)	102, 1047, 1788, 1885, 2231
Mox20I	TGGCCA	2 cut(s)	527, 2259
Mph1103I	ATGCAT	1 cut(s)	322
MroNI	GCCGGC	1 cut(s)	1956
MscI	TGGCCA	2 cut(s)	527, 2259
MseI	TTAA	8 cut(s)	108, 758, 938, 1293, 1395, 1806, 2307, 2354
MslI	CAYNNNNRTG	1 cut(s)	1912
Msp20I	TGGCCA	2 cut(s)	527, 2259
MspA1I	CMGCKG	2 cut(s)	617, 2235
MspCI	CTTAAG	4 cut(s)	107, 757, 1394, 1805
MspI	CCGG	3 cut(s)	16, 948, 1957
MspR9I	CCNGG	3 cut(s)	16, 506, 2140
MunI	CAATTG	2 cut(s)	267, 483
Mva1269I	GAATGC	1 cut(s)	1907
MvaI	CCWGG	2 cut(s)	506, 2140
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	6 cut(s)	194, 830, 980, 1414, 1756, 2179
NaeI	GCCGGC	1 cut(s)	1958
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	2 cut(s)	555, 2086
NdeII	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
NgoMIV	GCCGGC	1 cut(s)	1956
NlaIV	GGNNCC	6 cut(s)	159, 1552, 1976, 2015, 2144, 2165
NmuCI	GTSAC	4 cut(s)	943, 1418, 1513, 2363
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	5 cut(s)	154, 324, 1538, 1639, 1897
PaeI	GCATGC	2 cut(s)	324, 1538
PaeR7I	CTCGAG	1 cut(s)	2414
PagI	TCATGA	2 cut(s)	628, 2224
PaqCI	CACCTGC	1 cut(s)	1124
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	142
PciI	ACATGT	1 cut(s)	1893
PciSI	GCTCTTC	1 cut(s)	1740
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	1 cut(s)	1907
PdiI	GCCGGC	1 cut(s)	1958
PfeI	GAWTC	8 cut(s)	263, 632, 902, 1277, 1672, 1701, 1868, 2276
PinAI	ACCGGT	1 cut(s)	947
PkrI	GCNGC	9 cut(s)	92, 103, 276, 724, 982, 1058, 1234, 1346, 1713
PleI	GAGTC	4 cut(s)	193, 451, 766, 1583
PmaCI	CACGTG	1 cut(s)	880
PmlI	CACGTG	1 cut(s)	880
PpsI	GAGTC	4 cut(s)	193, 451, 766, 1583
Ppu21I	YACGTR	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	2013
PscI	ACATGT	1 cut(s)	1893
PsiI	TTATAA	1 cut(s)	2060
Psp5II	RGGWCCY	1 cut(s)	2013
Psp6I	CCWGG	2 cut(s)	504, 2138
PspCI	CACGTG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	943
PspFI	CCCAGC	1 cut(s)	2211
PspGI	CCWGG	2 cut(s)	504, 2138
PspN4I	GGNNCC	6 cut(s)	159, 1552, 1976, 2015, 2144, 2165
PspPI	GGNCC	8 cut(s)	472, 791, 1354, 1974, 2013, 2043, 2116, 2143
PspPPI	RGGWCCY	1 cut(s)	2013
PspXI	VCTCGAGB	1 cut(s)	2414
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	2 cut(s)	2065, 2163
PvuII	CAGCTG	2 cut(s)	617, 2235
RigI	GGCCGGCC	1 cut(s)	1960
RsaI	GTAC	5 cut(s)	1381, 1605, 1882, 2269, 2377
RsaNI	GTAC	5 cut(s)	1380, 1604, 1881, 2268, 2376
RseI	CAYNNNNRTG	1 cut(s)	1912
SapI	GCTCTTC	1 cut(s)	1740
SaqAI	TTAA	8 cut(s)	108, 758, 938, 1293, 1395, 1806, 2307, 2354
SatI	GCNGC	9 cut(s)	91, 102, 275, 723, 981, 1057, 1233, 1345, 1712
Sau3AI	GATC	7 cut(s)	33, 391, 730, 1154, 2065, 2163, 2227
Sau96I	GGNCC	8 cut(s)	472, 791, 1354, 1974, 2013, 2043, 2116, 2143
SchI	GAGTC	4 cut(s)	193, 452, 766, 1584
ScrFI	CCNGG	3 cut(s)	16, 506, 2140
SduI	GDGCHC	2 cut(s)	387, 1761
SfcI	CTRYAG	1 cut(s)	999
Sfr274I	CTCGAG	1 cut(s)	2414
SgrAI	CRCCGGYG	1 cut(s)	947
SinI	GGWCC	6 cut(s)	472, 1354, 1974, 2013, 2116, 2143
SlaI	CTCGAG	1 cut(s)	2414
SmiMI	CAYNNNNRTG	1 cut(s)	1912
SmlI	CTYRAG	7 cut(s)	107, 447, 726, 757, 1394, 1805, 2414
SmoI	CTYRAG	7 cut(s)	107, 447, 726, 757, 1394, 1805, 2414
SpeI	ACTAGT	1 cut(s)	596
SphI	GCATGC	2 cut(s)	324, 1538
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	88, 102, 118, 723, 2146
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	4 cut(s)	125, 597, 858, 867
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	14, 504, 2138
StyI	CCWWGG	3 cut(s)	300, 1978, 2105
TaaI	ACNGT	1 cut(s)	1379
TaiI	ACGT	4 cut(s)	365, 815, 882, 2345
TaqI	TCGA	5 cut(s)	1455, 1670, 2248, 2288, 2415
TatI	WGTACW	2 cut(s)	1379, 2375
TauI	GCSGC	2 cut(s)	104, 725
TfiI	GAWTC	8 cut(s)	263, 632, 902, 1277, 1672, 1701, 1868, 2276
Tru1I	TTAA	8 cut(s)	108, 758, 938, 1293, 1395, 1806, 2307, 2354
Tru9I	TTAA	8 cut(s)	108, 758, 938, 1293, 1395, 1806, 2307, 2354
TscAI	CASTG	3 cut(s)	1354, 1435, 2278
TseFI	GTSAC	4 cut(s)	943, 1418, 1513, 2363
TseI	GCWGC	7 cut(s)	90, 274, 980, 1056, 1232, 1344, 1711
Tsp45I	GTSAC	4 cut(s)	943, 1418, 1513, 2363
TspDTI	ATGAA	5 cut(s)	1032, 1758, 1900, 2103, 2166
TspRI	CASTG	3 cut(s)	1354, 1435, 2278
Vha464I	CTTAAG	4 cut(s)	107, 757, 1394, 1805
VneI	GTGCAC	1 cut(s)	1757
VpaK11BI	GGWCC	6 cut(s)	472, 1354, 1974, 2013, 2116, 2143
XagI	CCTNNNNNAGG	1 cut(s)	1040
XapI	RAATTY	5 cut(s)	19, 217, 373, 1177, 1716
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	5 cut(s)	154, 324, 1538, 1639, 1897
XcmI	CCANNNNNNNNNTGG	2 cut(s)	482, 1968
XhoI	CTCGAG	1 cut(s)	2414
XmiI	GTMKAC	1 cut(s)	2004
XspI	CTAG	4 cut(s)	125, 597, 858, 867
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.