Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Reverse (-)

39486361 .. 39489321

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCAGAAACAGTTGGAGGTGTGAAGATGTCCTGCAACGATAGCTGTGGCTGCCCTGTTCCGTGCCCTGGCGGCGTGTCCTGTAGGTGCACAACCAGGACGGAGGCCACGAGTGGGGACGGCCACATGAAGTGCTCGTGCGGCGAGCACTGTGGCTGCAACCCGTGCGCTTGTGCTAAGAGCGTCGTCTCTGCCGGAGTAGGCAGGGCCTACTGCAGGTGCGGCGAGGGTTGTACCTGTGTCTCATGCTCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

85

Amino Acids

8.4

Weight (kDa)

7.36

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_PEC	PF02068	12 - 84	7.4e-25	Plant PEC family metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	207
AciI	CCGC	3 cut(s)	72, 141, 222
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	68, 114, 216
AjnI	CCWGG	2 cut(s)	67, 95
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw21I	GWGCWC	3 cut(s)	92, 137, 150
Alw26I	GTCTC	2 cut(s)	193, 247
Alw44I	GTGCAC	1 cut(s)	88
AoxI	GGCC	3 cut(s)	105, 121, 207
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	51, 156
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	207
BaeGI	GKGCMC	2 cut(s)	68, 92
BauI	CACGAG	2 cut(s)	109, 136
Bbv12I	GWGCWC	3 cut(s)	92, 137, 150
BbvI	GCAGC	2 cut(s)	38, 143
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	69, 97
BcoDI	GTCTC	2 cut(s)	193, 247
BfmI	CTRYAG	2 cut(s)	82, 214
BfuAI	ACCTGC	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	52, 73, 142, 157, 223
BlsI	GCNGC	5 cut(s)	53, 74, 143, 158, 224
Bme1390I	CCNGG	2 cut(s)	69, 97
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	69, 97
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 114, 216
BseBI	CCWGG	2 cut(s)	69, 97
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	68, 114, 216
BseSI	GKGCMC	2 cut(s)	68, 92
BseXI	GCAGC	2 cut(s)	38, 143
BshFI	GGCC	3 cut(s)	107, 123, 209
BsiHKAI	GWGCWC	3 cut(s)	92, 137, 150
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	68, 114, 216
BsmAI	GTCTC	2 cut(s)	193, 247
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	107, 123, 209
Bsp1286I	GDGCHC	4 cut(s)	68, 92, 137, 150
BspACI	CCGC	3 cut(s)	72, 141, 222
BspANI	GGCC	3 cut(s)	107, 123, 209
BspMAI	CTGCAG	1 cut(s)	218
BspMI	ACCTGC	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	67
BssSI	CACGAG	2 cut(s)	109, 136
Bst2BI	CACGAG	2 cut(s)	109, 136
Bst2UI	CCWGG	2 cut(s)	69, 97
Bst4CI	ACNGT	2 cut(s)	13, 152
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	170
BstMAI	GTCTC	2 cut(s)	193, 247
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 51, 72, 141, 165, 222
BstNI	CCWGG	2 cut(s)	69, 97
BstSCI	CCNGG	2 cut(s)	67, 95
BstSFI	CTRYAG	2 cut(s)	82, 214
BstSLI	GKGCMC	2 cut(s)	68, 92
BstV1I	GCAGC	2 cut(s)	38, 143
BsuRI	GGCC	3 cut(s)	107, 123, 209
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	127, 246
CviJI	RGCY	6 cut(s)	45, 51, 107, 123, 156, 209
CviKI_1	RGCY	6 cut(s)	45, 51, 107, 123, 156, 209
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	67, 95
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	2 cut(s)	130, 249
FaiI	YATR	2 cut(s)	128, 247
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	126, 245
Fnu4HI	GCNGC	5 cut(s)	52, 73, 142, 157, 223
Fsp4HI	GCNGC	5 cut(s)	52, 73, 142, 157, 223
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	52, 73, 142, 157, 223
HaeIII	GGCC	3 cut(s)	107, 123, 209
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	130, 249
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	13, 152
HpyCH4V	TGCA	4 cut(s)	36, 90, 159, 216
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 51, 72, 141, 165, 222
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	130, 249
HspAI	GCGC	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	38, 143
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	4 cut(s)	68, 92, 137, 150
MnlI	CCTC	3 cut(s)	11, 97, 220
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	69, 97
MvaI	CCWGG	2 cut(s)	69, 97
MwoI	GCNNNNNNNGC	6 cut(s)	42, 51, 72, 141, 165, 222
NlaIII	CATG	2 cut(s)	130, 249
PaqCI	CACCTGC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PkrI	GCNGC	5 cut(s)	53, 74, 143, 158, 224
Psp6I	CCWGG	2 cut(s)	67, 95
PspGI	CCWGG	2 cut(s)	67, 95
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SatI	GCNGC	5 cut(s)	52, 73, 142, 157, 223
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	69, 97
SduI	GDGCHC	4 cut(s)	68, 92, 137, 150
SetI	ASST	5 cut(s)	22, 47, 89, 221, 239
SfcI	CTRYAG	2 cut(s)	82, 214
SsiI	CCGC	3 cut(s)	72, 141, 222
StyD4I	CCNGG	2 cut(s)	67, 95
TaaI	ACNGT	2 cut(s)	13, 152
TauI	GCSGC	3 cut(s)	75, 144, 225
TscAI	CASTG	1 cut(s)	155
TseI	GCWGC	2 cut(s)	51, 156
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	2 cut(s)	51, 116
TspRI	CASTG	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.