RLG00000019151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003030
Physical Location & Seq
Reverse (-)
47430479 .. 47431756
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019151

Sequence Viewer

Length: 711 bp
ATGGACTCCCTGCGTTGGATGGCACCGTCTTCCCTCGAGTTTCTATCAGTAAAACAAAATTCTTCAGAGATTCTCATTGAAAGAGATGCTCTTGACAGTGATCGACTAGAAAGATTAATTCGAGTGGCAATGAGCGTAGCTATTATAGAGGGGTTAATTGACCCTTCACAACTTTATACAGGTAGCCAAGTTGGTTTTCGAAACCTAGGTTTCGAACTGGTGGTGGCGATCTTCCCTCAGGCAAGGCGATCTTTCCTTAGGCAAGGCGGCGATCGTGGAGTGGCAAGATGCGGCGGTGTGGGGCGGGGTCTCGGCGTTGATCATGAGTTGCGGTGCGAGGTTTCTGGGTTGGAGGCTTCGCTGACCGTGTTTTTTGCTGGATTAGATCCGGTCTTCAAGCGTCGTGCAGCGTCGACGGAGGTGGTTGTCGGCTCTGATCGCAGCAGTAGACGAGGCCGGTGGCTGGGATGTGTTTGGTGCTTTGATCTGGGCGTCGCTGTATTGAAACGTCGATCAAGGTTGTTCTTTGAGGGCGGCAATTTTGAGGCGGCGGTTCACGACGATCTCCAGCCGGCTGTGTTCACCCAGACGTCGGTTGGCCTGGAGCGTTTCTCCCTTGTGGGGTTGGGTTTGGGCCTCGGTGTCTGGGCCTGGGCTCAACTTCGGGCTGCTGGGGCAGAAGACCTTGGCCTATATGGAAAAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.77

Weight (kDa)

7.69

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 2 cut(s) 413, 448
AciI CCGC 8 cut(s) 267, 291, 294, 304, 331, 534, 548, 551
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 2 cut(s) 492, 590
AfiI CCNNNNNNNGG 4 cut(s) 15, 463, 592, 621
AgsI TTSAA 3 cut(s) 80, 397, 505
AjnI CCWGG 2 cut(s) 600, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 5 cut(s) 454, 598, 634, 648, 688
ApeKI GCWGC 3 cut(s) 407, 441, 668
ApoI RAATTY 1 cut(s) 58
AseI ATTAAT 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 634, 648
AsuHPI GGTGA 1 cut(s) 574
AsuII TTCGAA 2 cut(s) 199, 213
AvaI CYCGRG 1 cut(s) 35
AvrII CCTAGG 1 cut(s) 205
AxyI CCTNAGG 2 cut(s) 237, 257
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 658
BbsI GAAGAC 3 cut(s) 21, 385, 687
BbvI GCAGC 3 cut(s) 419, 453, 655
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 2 cut(s) 602, 652
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 107, 206
BisI GCNGC 7 cut(s) 268, 292, 408, 442, 535, 549, 669
BlnI CCTAGG 1 cut(s) 205
BlsI GCNGC 7 cut(s) 269, 293, 409, 443, 536, 550, 670
Bme1390I CCNGG 2 cut(s) 602, 652
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 634, 648
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 602, 652
BmsI GCATC 2 cut(s) 76, 278
BpiI GAAGAC 3 cut(s) 21, 385, 687
BplI GAGNNNNNCTC 2 cut(s) 596, 628
BpmI CTGGAG 2 cut(s) 551, 623
Bpu14I TTCGAA 2 cut(s) 199, 213
BsaHI GRCGYC 2 cut(s) 492, 590
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 4 cut(s) 205, 637, 651, 685
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 463, 592, 621
Bse118I RCCGGY 2 cut(s) 456, 571
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 2 cut(s) 237, 257
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 602, 652
BseDI CCNNGG 4 cut(s) 205, 637, 651, 685
BseGI GGATG 2 cut(s) 24, 473
BseLI CCNNNNNNNGG 4 cut(s) 15, 463, 592, 621
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 419, 453, 655
BseYI CCCAGC 2 cut(s) 463, 671
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 5 cut(s) 456, 600, 636, 650, 690
BshNI GGYRCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 389, 457, 572
BslI CCNNNNNNNGG 4 cut(s) 15, 463, 592, 621
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 5 cut(s) 456, 600, 636, 650, 690
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 2 cut(s) 199, 213
Bsp1286I GDGCHC 1 cut(s) 658
BspACI CCGC 8 cut(s) 267, 291, 294, 304, 331, 534, 548, 551
BspANI GGCC 5 cut(s) 456, 600, 636, 650, 690
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 2 cut(s) 199, 213
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 456, 571
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 2 cut(s) 456, 571
BssECI CCNNGG 4 cut(s) 205, 637, 651, 685
BssNI GRCGYC 2 cut(s) 492, 590
BssT1I CCWWGG 2 cut(s) 205, 685
Bst2UI CCWGG 2 cut(s) 602, 652
Bst4CI ACNGT 3 cut(s) 27, 98, 367
BstACI GRCGYC 2 cut(s) 492, 590
BstBI TTCGAA 2 cut(s) 199, 213
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 237, 257
BstF5I GGATG 2 cut(s) 24, 473
BstMAI GTCTC 1 cut(s) 314
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 438, 674
BstNI CCWGG 2 cut(s) 602, 652
BstSCI CCNGG 2 cut(s) 600, 650
BstV1I GCAGC 3 cut(s) 419, 453, 655
BstV2I GAAGAC 3 cut(s) 21, 385, 687
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 2 cut(s) 237, 257
BsuRI GGCC 5 cut(s) 456, 600, 636, 650, 690
BtsCI GGATG 2 cut(s) 24, 473
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 2 cut(s) 456, 571
Cfr13I GGNCC 2 cut(s) 634, 648
CseI GACGC 3 cut(s) 389, 399, 481
CviAII CATG 1 cut(s) 323
DdeI CTNAG 2 cut(s) 237, 257
Eco130I CCWWGG 2 cut(s) 205, 685
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 2 cut(s) 237, 257
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 600, 650
EcoT14I CCWWGG 2 cut(s) 205, 685
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 205, 685
FaeI CATG 1 cut(s) 326
FaiI YATR 5 cut(s) 146, 177, 324, 694, 696
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 297
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 2 cut(s) 413, 448
Fnu4HI GCNGC 7 cut(s) 268, 292, 408, 442, 535, 549, 669
FokI GGATG 2 cut(s) 31, 480
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 7 cut(s) 268, 292, 408, 442, 535, 549, 669
FspBI CTAG 2 cut(s) 107, 206
GluI GCNGC 7 cut(s) 268, 292, 408, 442, 535, 549, 669
GsaI CCCAGC 2 cut(s) 467, 675
GsuI CTGGAG 2 cut(s) 551, 623
HaeIII GGCC 5 cut(s) 456, 600, 636, 650, 690
HapII CCGG 3 cut(s) 389, 457, 572
HgaI GACGC 3 cut(s) 389, 399, 481
Hin1I GRCGYC 2 cut(s) 492, 590
Hin1II CATG 1 cut(s) 326
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 2 cut(s) 5, 70
HpaII CCGG 3 cut(s) 389, 457, 572
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 4 cut(s) 414, 449, 556, 582
Hpy188I TCNGA 2 cut(s) 67, 436
Hpy188III TCNNGA 3 cut(s) 92, 323, 557
Hpy8I GTNNAC 4 cut(s) 414, 449, 556, 582
Hpy99I CGWCG 7 cut(s) 405, 415, 418, 497, 513, 563, 595
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 3 cut(s) 27, 98, 367
HpyCH4IV ACGT 2 cut(s) 508, 590
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 674
HpyF3I CTNAG 2 cut(s) 237, 257
HpySE526I ACGT 2 cut(s) 508, 590
Hsp92I GRCGYC 2 cut(s) 492, 590
Hsp92II CATG 1 cut(s) 326
KroI GCCGGC 1 cut(s) 571
KroNI GCCGGC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 319
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 3 cut(s) 419, 453, 655
LweI GCATC 2 cut(s) 76, 278
MaeI CTAG 2 cut(s) 107, 206
MaeII ACGT 2 cut(s) 508, 590
MboII GAAGA 5 cut(s) 21, 54, 223, 385, 692
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 4 cut(s) 58, 117, 156, 538
MmeI TCCRAC 1 cut(s) 330
MroNI GCCGGC 1 cut(s) 571
MseI TTAA 2 cut(s) 116, 155
MspI CCGG 3 cut(s) 389, 457, 572
MspR9I CCNGG 2 cut(s) 602, 652
MvaI CCWGG 2 cut(s) 602, 652
MwoI GCNNNNNNNGC 2 cut(s) 438, 674
NaeI GCCGGC 1 cut(s) 573
NgoMIV GCCGGC 1 cut(s) 571
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 24
NmeAIII GCCGAG 1 cut(s) 291
NspV TTCGAA 2 cut(s) 199, 213
PaeR7I CTCGAG 1 cut(s) 35
PagI TCATGA 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 7 cut(s) 269, 293, 409, 443, 536, 550, 670
Ple19I CGATCG 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 600, 650
PspFI CCCAGC 2 cut(s) 463, 671
PspGI CCWGG 2 cut(s) 600, 650
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 634, 648
PspXI VCTCGAGB 1 cut(s) 35
PsuI RGATCY 1 cut(s) 385
PvuI CGATCG 1 cut(s) 274
SalI GTCGAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 116, 155
SatI GCNGC 7 cut(s) 268, 292, 408, 442, 535, 549, 669
Sau96I GGNCC 2 cut(s) 634, 648
ScrFI CCNGG 2 cut(s) 602, 652
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 2 cut(s) 76, 278
Sfr274I CTCGAG 1 cut(s) 35
SfuI TTCGAA 2 cut(s) 199, 213
SgrDI CGTCGACG 1 cut(s) 412
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 58, 117, 156, 538
SsiI CCGC 8 cut(s) 267, 291, 294, 304, 331, 534, 548, 551
SspMI CTAG 2 cut(s) 107, 206
StyD4I CCNGG 2 cut(s) 600, 650
StyI CCWWGG 2 cut(s) 205, 685
TaaI ACNGT 3 cut(s) 27, 98, 367
TaiI ACGT 2 cut(s) 511, 593
TaqI TCGA 7 cut(s) 36, 103, 121, 199, 213, 413, 511
TasI AATT 4 cut(s) 58, 117, 156, 538
TauI GCSGC 4 cut(s) 270, 294, 537, 551
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 116, 155
Tru9I TTAA 2 cut(s) 116, 155
TscAI CASTG 1 cut(s) 103
TseI GCWGC 3 cut(s) 407, 441, 668
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 1 cut(s) 103
VspI ATTAAT 1 cut(s) 116
XapI RAATTY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XhoI CTCGAG 1 cut(s) 35
XmaJI CCTAGG 1 cut(s) 205
XmiI GTMKAC 2 cut(s) 413, 448
XspI CTAG 2 cut(s) 107, 206
ZraI GACGTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.