Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

39489977 .. 39490332

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0248200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTATACAAGTGAAAGGACTTTGCCTGAAGAGCAAACTAATCTCCAAGTCTTGTTCAAAACAACCTTAATCACTTATCATCAGAATTACAATTACAGTTCAATGATGATGAACAGAAACGGCATGCTATGGCAGAACTACAGCATTCAGACTGCTCCATCAACATCAAACGGATCAAATTACAATGAACAAAGTATGTCTATGACGTGCGAAAATCATCTACAATTAATACAGAAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

81

Amino Acids

9.6

Weight (kDa)

6.81

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	58, 102
AjiI	CACGTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	227
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	24
BssMI	GATC	1 cut(s)	173
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	125
CviAII	CATG	1 cut(s)	124
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	48
FaeI	CATG	1 cut(s)	127
FaiI	YATR	6 cut(s)	6, 125, 130, 197, 203, 240
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	5
FspEI	CC	7 cut(s)	39, 59, 79, 105, 115, 156, 171
Hin1II	CATG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	84, 150
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	173
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	206
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	1 cut(s)	41
MluCI	AATT	4 cut(s)	85, 91, 178, 224
MseI	TTAA	2 cut(s)	68, 227
Mva1269I	GAATGC	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	127
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	24
PctI	GAATGC	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	68, 227
Sau3AI	GATC	1 cut(s)	173
SetI	ASST	2 cut(s)	68, 209
SfcI	CTRYAG	1 cut(s)	139
SgeI	CNNG	6 cut(s)	21, 38, 59, 64, 136, 219
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	4 cut(s)	85, 91, 178, 224
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	209
TasI	AATT	4 cut(s)	85, 91, 178, 224
Tru1I	TTAA	2 cut(s)	68, 227
Tru9I	TTAA	2 cut(s)	68, 227
TspDTI	ATGAA	2 cut(s)	125, 201
TspGWI	ACGGA	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	227
XceI	RCATGY	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.