Rmu_sc0039793.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039793.1
OG0003030
Physical Location & Seq
Reverse (-)
474 .. 2702
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039793.1_g000001.1.cds

Sequence Viewer

Length: 879 bp
atgccacgtggtgcagcagcccgtgcacgagaatttctcatgacatatgcattcatgaccattatcttcttcccccagtctttgtctgcagcatgtggatttggatctgagattatgccaaccttgagaaacaagaaaaagatactgattatatttatacgtggccttcgaagtgtgtatagagccgttaaggtttgcggcgctgttcatgggtctggggctatagtcagtcccagtgtcccatacacattggttttgagacgtggtttcgaactggcggcggcgatcttccctcaggtaaggttatctttcctcaggcaaggcgacgatcgtggagggacaagatgcggcggcgcggagtggggcctcggcgttgatcgtgagtggcgacgcaaggtttctaggttggaggcctcgctaaccgtgttttttgctgggttagatccggtctttgagcgccttgcaacgtcgacggaggtggttgtcggctctgatcatggcagtagacgaggctgggggctgggatgtgtagattggtgcttcgatctgggcgtcgtctttctgagacgtcgatcaaagttgttctttgagggcgacagttttgaggcggcggctcatggcgatctccaaccggctgtgttcacccagacgtcggtggacggtttgatgatgtgggttggaaggccgccggaaatggcagtggtggaggcggagtggcagaagaggatggactggaatgtttctcccttgtgggcttggatttgggtctgggtctctgggcctgagctcaactcctggctgttggggcagaggagcaaaacttggtttggagtttgggcctacgggcttgggctcagtctaaggcaatttgggccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.66

Weight (kDa)

9.78

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 571, 653
AccI GTMKAC 2 cut(s) 470, 505
AccII CGCG 1 cut(s) 356
AclWI GGATC 2 cut(s) 112, 437
AcsI RAATTY 1 cut(s) 32
AcvI CACGTG 1 cut(s) 8
AcyI GRCGYC 3 cut(s) 552, 568, 650
AdeI CACNNNGTG 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 652
AjiI CACGTC 1 cut(s) 263
AjnI CCWGG 1 cut(s) 794
AluBI AGCT 1 cut(s) 787
AluI AGCT 1 cut(s) 787
Alw21I GWGCWC 2 cut(s) 28, 789
Alw26I GTCTC 3 cut(s) 253, 559, 778
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 2 cut(s) 112, 437
AoxI GGCC 7 cut(s) 163, 364, 411, 683, 779, 837, 872
ApaI GGGCCC 1 cut(s) 876
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 14, 17, 89
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 3 cut(s) 203, 356, 459
AspS9I GGNCC 5 cut(s) 364, 779, 837, 872, 873
AsuHPI GGTGA 1 cut(s) 634
AsuII TTCGAA 2 cut(s) 169, 270
AxyI CCTNAGG 2 cut(s) 294, 314
BaeGI GKGCMC 2 cut(s) 28, 876
BanII GRGCYC 3 cut(s) 789, 855, 876
BauI CACGAG 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 28, 789
BbvI GCAGC 3 cut(s) 26, 29, 101
BccI CCATC 1 cut(s) 721
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 796
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 253, 559, 778
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 2 cut(s) 87, 222
BfoI RGCGCY 2 cut(s) 204, 460
Bme1390I CCNGG 1 cut(s) 796
BmgBI CACGTC 1 cut(s) 263
BmgT120I GGNCC 5 cut(s) 364, 779, 837, 872, 873
BmiI GGNNCC 2 cut(s) 365, 874
BmrFI CCNGG 1 cut(s) 796
BmrI ACTGGG 2 cut(s) 70, 228
BmsI GCATC 1 cut(s) 335
BmuI ACTGGG 2 cut(s) 70, 228
BplI GAGNNNNNCTC 4 cut(s) 21, 53, 776, 808
Bpu10I CCTNAGC 1 cut(s) 783
Bpu14I TTCGAA 2 cut(s) 169, 270
BpuEI CTTGAG 1 cut(s) 145
BsaAI YACGTR 2 cut(s) 8, 161
BsaBI GATNNNNATC 1 cut(s) 103
BsaHI GRCGYC 3 cut(s) 552, 568, 650
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 4 cut(s) 76, 234, 279, 737
Bse21I CCTNAGG 2 cut(s) 294, 314
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 796
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 530, 732
BseJI GATNNNNATC 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMII CTCAG 6 cut(s) 99, 308, 328, 554, 774, 868
BseNI ACTGG 4 cut(s) 76, 234, 279, 737
BseRI GAGGAG 1 cut(s) 826
BseSI GKGCMC 2 cut(s) 28, 876
BseXI GCAGC 3 cut(s) 26, 29, 101
BseYI CCCAGC 3 cut(s) 434, 513, 520
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 7 cut(s) 165, 366, 413, 685, 781, 839, 874
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 28, 789
BsiSI CCGG 3 cut(s) 446, 632, 689
BslFI GGGAC 3 cut(s) 216, 224, 352
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 3 cut(s) 253, 559, 778
BsmBI CGTCTC 2 cut(s) 253, 559
BsmFI GGGAC 3 cut(s) 216, 224, 352
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 7 cut(s) 165, 366, 413, 685, 781, 839, 874
Bso31I GGTCTC 1 cut(s) 778
Bsp119I TTCGAA 2 cut(s) 169, 270
Bsp120I GGGCCC 1 cut(s) 872
Bsp1286I GDGCHC 4 cut(s) 28, 789, 855, 876
Bsp143I GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
BspANI GGCC 7 cut(s) 165, 366, 413, 685, 781, 839, 874
BspCNI CTCAG 6 cut(s) 100, 307, 327, 555, 775, 867
BspFNI CGCG 1 cut(s) 356
BspHI TCATGA 2 cut(s) 39, 54
BspLI GGNNCC 2 cut(s) 365, 874
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 2 cut(s) 112, 437
BspT104I TTCGAA 2 cut(s) 169, 270
BspTNI GGTCTC 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 4 cut(s) 76, 234, 279, 737
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
BssNI GRCGYC 3 cut(s) 552, 568, 650
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 3 cut(s) 424, 599, 662
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 3 cut(s) 552, 568, 650
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBAI YACGTR 2 cut(s) 8, 161
BstBI TTCGAA 2 cut(s) 169, 270
BstDEI CTNAG 7 cut(s) 108, 294, 314, 563, 783, 854, 860
BstF5I GGATG 2 cut(s) 530, 732
BstFNI CGCG 1 cut(s) 356
BstH2I RGCGCY 2 cut(s) 204, 460
BstHHI GCGC 3 cut(s) 203, 356, 459
BstKTI GATC 9 cut(s) 107, 288, 331, 379, 445, 496, 547, 575, 625
BstMAI GTCTC 3 cut(s) 253, 559, 778
BstMBI GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 3 cut(s) 23, 805, 871
BstNI CCWGG 1 cut(s) 796
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 794
BstSFI CTRYAG 2 cut(s) 87, 222
BstSLI GKGCMC 2 cut(s) 28, 876
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 26, 29, 101
BstX2I RGATCY 2 cut(s) 104, 442
BstYI RGATCY 2 cut(s) 104, 442
Bsu36I CCTNAGG 2 cut(s) 294, 314
BsuRI GGCC 7 cut(s) 165, 366, 413, 685, 781, 839, 874
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 530, 732
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 241, 705
CciI TCATGA 2 cut(s) 39, 54
CfoI GCGC 3 cut(s) 203, 356, 459
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 5 cut(s) 364, 779, 837, 872, 873
CseI GACGC 2 cut(s) 399, 541
CviAII CATG 6 cut(s) 40, 55, 93, 209, 497, 617
DdeI CTNAG 7 cut(s) 108, 294, 314, 563, 783, 854, 860
DpnI GATC 9 cut(s) 106, 287, 330, 378, 444, 495, 546, 574, 624
DpnII GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
DraIII CACNNNGTG 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 1 cut(s) 725
Ecl136II GAGCTC 1 cut(s) 787
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 3 cut(s) 789, 855, 876
Eco31I GGTCTC 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 787
Eco72I CACGTG 1 cut(s) 8
Eco81I CCTNAGG 2 cut(s) 294, 314
EcoICRI GAGCTC 1 cut(s) 787
EcoO109I RGGNCCY 2 cut(s) 364, 873
EcoRII CCWGG 1 cut(s) 794
EcoT22I ATGCAT 1 cut(s) 52
EcoT38I GRGCYC 3 cut(s) 789, 855, 876
Esp3I CGTCTC 2 cut(s) 253, 559
FaeI CATG 6 cut(s) 43, 58, 96, 212, 500, 620
FalI AAGNNNNNCTT 4 cut(s) 292, 324, 569, 601
FaqI GGGAC 3 cut(s) 216, 224, 352
FatI CATG 6 cut(s) 39, 54, 92, 208, 496, 616
FauNDI CATATG 1 cut(s) 46
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 2 cut(s) 470, 505
FokI GGATG 2 cut(s) 537, 739
FriOI GRGCYC 3 cut(s) 789, 855, 876
FspBI CTAG 1 cut(s) 402
GlaI GCGC 3 cut(s) 202, 355, 458
GsaI CCCAGC 3 cut(s) 438, 517, 524
HaeII RGCGCY 2 cut(s) 204, 460
HaeIII GGCC 7 cut(s) 165, 366, 413, 685, 781, 839, 874
HapII CCGG 3 cut(s) 446, 632, 689
HgaI GACGC 2 cut(s) 399, 541
HhaI GCGC 3 cut(s) 203, 356, 459
Hin1I GRCGYC 3 cut(s) 552, 568, 650
Hin1II CATG 6 cut(s) 43, 58, 96, 212, 500, 620
Hin6I GCGC 3 cut(s) 201, 354, 457
HinP1I GCGC 3 cut(s) 201, 354, 457
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HpaII CCGG 3 cut(s) 446, 632, 689
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 5 cut(s) 26, 471, 506, 642, 658
Hpy188I TCNGA 3 cut(s) 109, 493, 564
Hpy188III TCNNGA 3 cut(s) 40, 55, 380
Hpy8I GTNNAC 5 cut(s) 26, 471, 506, 642, 658
Hpy99I CGWCG 7 cut(s) 329, 393, 472, 475, 557, 573, 655
HpyAV CCTTC 2 cut(s) 176, 675
HpyCH4III ACNGT 3 cut(s) 424, 599, 662
HpyCH4IV ACGT 6 cut(s) 7, 160, 262, 467, 568, 650
HpyCH4V TGCA 5 cut(s) 14, 26, 50, 89, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 805, 871
HpyF3I CTNAG 7 cut(s) 108, 294, 314, 563, 783, 854, 860
HpySE526I ACGT 6 cut(s) 7, 160, 262, 467, 568, 650
Hsp92I GRCGYC 3 cut(s) 552, 568, 650
Hsp92II CATG 6 cut(s) 43, 58, 96, 212, 500, 620
HspAI GCGC 3 cut(s) 201, 354, 457
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
LmnI GCTCC 1 cut(s) 813
Lsp1109I GCAGC 3 cut(s) 26, 29, 101
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 402
MaeII ACGT 6 cut(s) 7, 160, 262, 467, 568, 650
MalI GATC 9 cut(s) 106, 287, 330, 378, 444, 495, 546, 574, 624
MboI GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
MboII GAAGA 4 cut(s) 58, 61, 280, 733
MflI RGATCY 2 cut(s) 104, 442
MhlI GDGCHC 4 cut(s) 28, 789, 855, 876
MluCI AATT 2 cut(s) 32, 866
MmeI TCCRAC 3 cut(s) 387, 652, 658
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 1 cut(s) 189
MspI CCGG 3 cut(s) 446, 632, 689
MspR9I CCNGG 1 cut(s) 796
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 23, 805, 871
NdeI CATATG 1 cut(s) 46
NdeII GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
NlaIII CATG 6 cut(s) 43, 58, 96, 212, 500, 620
NlaIV GGNNCC 2 cut(s) 365, 874
NmeAIII GCCGAG 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 96
NspV TTCGAA 2 cut(s) 169, 270
PagI TCATGA 2 cut(s) 39, 54
PceI AGGCCT 1 cut(s) 413
PcsI WCGNNNNNNNCGW 3 cut(s) 166, 385, 549
PctI GAATGC 1 cut(s) 50
Ple19I CGATCG 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 2 cut(s) 8, 161
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 794
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 3 cut(s) 434, 513, 520
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 2 cut(s) 365, 874
PspOMI GGGCCC 1 cut(s) 872
PspPI GGNCC 5 cut(s) 364, 779, 837, 872, 873
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 2 cut(s) 104, 442
PvuI CGATCG 1 cut(s) 331
SacI GAGCTC 1 cut(s) 789
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 9 cut(s) 104, 285, 328, 376, 442, 493, 544, 572, 622
Sau96I GGNCC 5 cut(s) 364, 779, 837, 872, 873
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 4 cut(s) 28, 789, 855, 876
SfaNI GCATC 1 cut(s) 335
SfcI CTRYAG 2 cut(s) 87, 222
SfuI TTCGAA 2 cut(s) 169, 270
SgrDI CGTCGACG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 32, 866
SseBI AGGCCT 1 cut(s) 413
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 789
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 794
TaaI ACNGT 3 cut(s) 424, 599, 662
TaiI ACGT 6 cut(s) 10, 163, 265, 470, 571, 653
TaqI TCGA 5 cut(s) 169, 270, 470, 543, 571
TasI AATT 2 cut(s) 32, 866
TauI GCSGC 8 cut(s) 201, 281, 284, 351, 354, 611, 614, 688
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 241, 705
TseI GCWGC 3 cut(s) 14, 17, 89
TspDTI ATGAA 2 cut(s) 43, 197
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 241, 705
VneI GTGCAC 1 cut(s) 24
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 2 cut(s) 470, 505
XspI CTAG 1 cut(s) 402
ZraI GACGTC 2 cut(s) 569, 651
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.