Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Reverse (-)

56173661 .. 56178622

Gene Structure 4962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG375400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGACAGGGACGCCCGGAATTTGATGCGTCCGATCAACTCCGATTTCACTTCGTCGTCGTCGTCTTCCTCTAATTCCGACCTTTTCCGCAGCGTTCAGGCCGCGCTTAAGCGCCACCGCCCTCTAGAGACAAGCATAAGGCCTAAGCGCATGTTGGCTCCCCGAAGAGAAGTAACTAAAGGTTCAGCTTCAAGTGCGGCTGTCGTTGACACAAAGAGTTCGCGAGATGTAGCTACGCAGGGTCAGGATAATACTGCAAAGGAATCAAGTGTGCAGCCACACGACATGCCTACTAGTGCCAAGGAAACTCAGGAAGATGCATGTGTTACGGCAGTTTCCAATTCAAGCAGTATCACCCACACATTTGATGAGAATTTAGATGTGCCCATAGATCAAACTAAGCCTGACATTGGTGCTTCCTGTCATTTTGAGTCTCAAGGGATTGATGCTCAAAAGAAGGTCCAATTTTCAATTGGAACTGGTTCTTCTTCCCTGGGGGCTGATGATAATATGGCCACTCAATCAGAGACCTTATCATCTCATATGCGTTCACTTGCATTGACAGAAATGGAGTGGGTTTCTACTAGTCAAGCAGAGGCATCAGCTGTCATAAATCATGATTCAAAGCATCAGAATATTTTGAATACAGAAGCCGATATCTGTTTGAAGTCTGATGGTGGGATTTCCTTGTTGGCAAAGAGAACAACTGCTGCTCAAGATCAGTTGCATCAATTCAGGAACTTCTTAAGCCAGCCTATGACTCAATCCTCAGTTGTTGGGCCATCGTGTGCTACTACAACGTCTGTCCATGCTACTTCAGCACCCATGTCAACAACTTATTGTTCTAGTTTGCATAGTGGTTATCACGTGCCAGTAGAACCCTTGAAGGATTCTAATGTAAACCCTCAACCATCAAATGCTCCTTTAAGGGGCACCGGTGCAATGTCCAATCCCCAGATAGCTGTTGCAGCCCAACCTTCTACCTCTGCAGTTGATACCCAAAACGAAGGTAAGGAATATGACCTTTCTAAGGAGCAAAAAGGCTGCAAGCTGTCGGAGAGTGAATATCAGGAAAACCCTTCTCTTGCCGATGTGAAGCAAACTGAAGTTGAATCGTATGCAGGTGATGTTGCCAATGCACGATCTCAGGTTACTTTGCCCCCAAATTTATGTTCTGATACGAAGTCAGAGCCTTCAAAATCAGAAAAACAAGAAAAGGCTGCAAGTGGTAAAGTTGTTCCAGCTCCTCGTAAAAAAAATAAAGATTCTGACTTGTTTATTAAAGTAAATGGGAAGCTCTATCAGAGGCTTGGAAAAATAGGTAGTGGAGGCAGCAGTGAGGTCCACAAAGTTATATCATCAGACTGTACAATCTATGCTCTTAAGAAAATCAAGCTGAAAGGGCGTGACTATGCCACTGCTTTTGGTTTTTGTCAGGAAATCGAATATCTGAATAAGTTGAAAGGGAAGAACCACATCATACAGCTTATAGACTATGAGGTGACAGATAAGGCTTTACTGCATGCAGTATTGAGTGGCTCCATAAATAATAAAGATGGCAGAGTCAAGGATGATGGGTATATATACATGGTACTTGAATATGGAGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAAGGAAATGGATGGGTCGAATCAGACCATAGATGAGAACTGGCTACGATTCTACTGGCAGCAAATTCTTCTGGCAGTCAGCACCATACATGAAGAGCGAATTGTGCACTCTGACTTGAAGCCGGCTAATTTCCTGCTTGTCAGAGGCTCTCTTAAGCTGATTGATTTTGGGATTGCTAAAGCTATAATGAGTGATACAACCAACATCCAACGGGATTCTCAGGTGGGTACGCTAAGTTACATGTCTCCAGAGGCATTTATGTGCAATGAGACTGATGCAGATGGAAACACTATCAAGTGTGGCCGGCCATCAGACATTTGGTCCCTTGGTTGCATCCTTTATCAGATGGTATACGGGAGGACCCCATTTGCAGACTACAAGACCTTCTGGGCCAAGTTCAAAGTTATAACAGATCCTAACCATCAAATTTCATATGAACCAGTCCCTAACCCTTGGCTTCTGGACCTCATGAGAAAGTGCCTTGCCTGGGACCGCAATGAAAGATGGAGGATCCCTGAACTACTTCAGCACCCTTTTCTTGTTCCCCCAGTTCCAACCCAGCCATCTTCTCATGAACACAGCTGTAAATTGCTTCGACTTATTGGCCAAAATTGTACCAGTGATTCTGAAGCGTCGAAGCTTGTTTGTCAGCTTAAACAACTGCTTGAAGACCCTTTGCCATCCACAATGTCTCAGTTATTAACATCGCATGACCAACAATGTACATTGCTCTCCCAAGTGTCAAAAGTTTGCCTTCAGCTCCAGGAACACTTTCAGAGAGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

809

Amino Acids

89.41

Weight (kDa)

6.24

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	434 - 727	1.7e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	440 - 723	8.9e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2048
AarI	CACCTGC	1 cut(s)	1112
Acc36I	ACCTGC	1 cut(s)	1112
AccB1I	GGYRCC	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	1992
AccII	CGCG	2 cut(s)	104, 223
AciI	CCGC	5 cut(s)	88, 102, 118, 197, 2134
AclWI	GGATC	3 cut(s)	2048, 2146, 2159
AcoI	YGGCCR	4 cut(s)	513, 1942, 1946, 2245
AcsI	RAATTY	5 cut(s)	19, 373, 1165, 1704, 2067
AcuI	CTGAAG	5 cut(s)	801, 1125, 2150, 2289, 2381
AcvI	CACGTG	1 cut(s)	868
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	5 cut(s)	1369, 1593, 1870, 2257, 2365
AfiI	CCNNNNNNNGG	5 cut(s)	410, 929, 1030, 1638, 2128
AflII	CTTAAG	4 cut(s)	107, 745, 1382, 1793
AflIII	ACRYGT	1 cut(s)	1881
AgeI	ACCGGT	1 cut(s)	935
AhdI	GACNNNNNGTC	1 cut(s)	1960
AhlI	ACTAGT	2 cut(s)	293, 584
AjnI	CCWGG	3 cut(s)	492, 2126, 2403
AjuI	GAANNNNNNNTTGG	2 cut(s)	1156, 1188
Alw21I	GWGCWC	1 cut(s)	1749
Alw26I	GTCTC	7 cut(s)	122, 438, 521, 1890, 1904, 2337, 2415
Alw44I	GTGCAC	1 cut(s)	1745
AlwI	GGATC	3 cut(s)	2048, 2146, 2159
AoxI	GGCC	8 cut(s)	99, 140, 513, 779, 1942, 1946, 2031, 2245
ApaLI	GTGCAC	1 cut(s)	1745
ApeKI	GCWGC	8 cut(s)	90, 274, 710, 968, 1044, 1220, 1332, 1699
ApoI	RAATTY	5 cut(s)	19, 373, 1165, 1704, 2067
AsiGI	ACCGGT	1 cut(s)	935
Asp700I	GAANNNNTTC	3 cut(s)	481, 2163, 2412
AspLEI	GCGC	3 cut(s)	106, 114, 150
AspS9I	GGNCC	8 cut(s)	460, 779, 1342, 1962, 2001, 2031, 2104, 2131
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	346, 1136, 1513
AvaII	GGWCC	6 cut(s)	460, 1342, 1962, 2001, 2104, 2131
BaeGI	GKGCMC	3 cut(s)	387, 935, 1749
BalI	TGGCCA	2 cut(s)	515, 2247
BamHI	GGATCC	1 cut(s)	2151
BanI	GGYRCC	1 cut(s)	932
BbrPI	CACGTG	1 cut(s)	868
BbsI	GAAGAC	2 cut(s)	57, 2316
Bbv12I	GWGCWC	1 cut(s)	1749
BbvI	GCAGC	8 cut(s)	102, 286, 697, 980, 1031, 1207, 1344, 1711
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	3 cut(s)	494, 2128, 2405
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	7 cut(s)	122, 438, 521, 1890, 1904, 2337, 2415
BcuI	ACTAGT	2 cut(s)	293, 584
BfaI	CTAG	4 cut(s)	125, 294, 585, 846
BfmI	CTRYAG	1 cut(s)	987
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	4 cut(s)	107, 745, 1382, 1793
BfuAI	ACCTGC	1 cut(s)	1112
Bme1390I	CCNGG	4 cut(s)	16, 494, 2128, 2405
Bme18I	GGWCC	6 cut(s)	460, 1342, 1962, 2001, 2104, 2131
BmeRI	GACNNNNNGTC	1 cut(s)	1960
BmgT120I	GGNCC	8 cut(s)	460, 779, 1342, 1962, 2001, 2031, 2104, 2131
BmiI	GGNNCC	7 cut(s)	159, 934, 1540, 1964, 2003, 2132, 2153
BmrFI	CCNGG	4 cut(s)	16, 494, 2128, 2405
BmrI	ACTGGG	1 cut(s)	2183
BmsI	GCATC	8 cut(s)	15, 307, 436, 608, 637, 736, 1906, 1983
BmuI	ACTGGG	1 cut(s)	2183
BpiI	GAAGAC	2 cut(s)	57, 2316
BpmI	CTGGAG	2 cut(s)	1872, 2387
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	420, 699
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	868
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	6 cut(s)	300, 492, 493, 1966, 2093, 2127
BsaWI	WCCGGW	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 929, 1030, 1638, 2128
Bse118I	RCCGGY	3 cut(s)	935, 1762, 1944
Bse1I	ACTGG	7 cut(s)	484, 872, 1685, 1700, 2081, 2189, 2259
Bse3DI	GCAATG	4 cut(s)	948, 1912, 2143, 2366
BseBI	CCWGG	3 cut(s)	494, 2128, 2405
BseDI	CCNNGG	6 cut(s)	300, 492, 493, 1966, 2093, 2127
BseGI	GGATG	5 cut(s)	1576, 1657, 1845, 1974, 2321
BseLI	CCNNNNNNNGG	5 cut(s)	410, 929, 1030, 1638, 2128
BseMI	GCAATG	4 cut(s)	948, 1912, 2143, 2366
BseMII	CTCAG	5 cut(s)	323, 783, 1160, 1874, 2348
BseNI	ACTGG	7 cut(s)	484, 872, 1685, 1700, 2081, 2189, 2259
BseRI	GAGGAG	1 cut(s)	1236
BseSI	GKGCMC	3 cut(s)	387, 935, 1749
BseXI	GCAGC	8 cut(s)	102, 286, 697, 980, 1031, 1207, 1344, 1711
BseYI	CCCAGC	1 cut(s)	2199
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	104, 223
BshFI	GGCC	8 cut(s)	101, 142, 515, 781, 1944, 1948, 2033, 2247
BshNI	GGYRCC	1 cut(s)	932
BshTI	ACCGGT	1 cut(s)	935
BsiHKAI	GWGCWC	1 cut(s)	1749
BsiSI	CCGG	4 cut(s)	16, 936, 1763, 1945
BslFI	GGGAC	5 cut(s)	23, 1615, 1948, 2069, 2144
BslI	CCNNNNNNNGG	5 cut(s)	410, 929, 1030, 1638, 2128
BsmAI	GTCTC	7 cut(s)	122, 438, 521, 1890, 1904, 2337, 2415
BsmFI	GGGAC	5 cut(s)	23, 1615, 1948, 2069, 2144
BsnI	GGCC	8 cut(s)	101, 142, 515, 781, 1944, 1948, 2033, 2247
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	387, 935, 1749
Bsp1407I	TGTACA	2 cut(s)	1367, 2363
Bsp143I	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
Bsp68I	TCGCGA	1 cut(s)	223
BspACI	CCGC	5 cut(s)	88, 102, 118, 197, 2134
BspANI	GGCC	8 cut(s)	101, 142, 515, 781, 1944, 1948, 2033, 2247
BspCNI	CTCAG	5 cut(s)	322, 782, 1159, 1873, 2347
BspFNI	CGCG	2 cut(s)	104, 223
BspHI	TCATGA	3 cut(s)	616, 2109, 2212
BspLI	GGNNCC	7 cut(s)	159, 934, 1540, 1964, 2003, 2132, 2153
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	1112
BspPI	GGATC	3 cut(s)	2048, 2146, 2159
BspQI	GCTCTTC	1 cut(s)	1728
BspT107I	GGYRCC	1 cut(s)	932
BspTI	CTTAAG	4 cut(s)	107, 745, 1382, 1793
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	4 cut(s)	948, 1912, 2143, 2366
BsrFI	RCCGGY	3 cut(s)	935, 1762, 1944
BsrGI	TGTACA	2 cut(s)	1367, 2363
BsrI	ACTGG	7 cut(s)	484, 872, 1685, 1700, 2081, 2189, 2259
BssAI	RCCGGY	3 cut(s)	935, 1762, 1944
BssECI	CCNNGG	6 cut(s)	300, 492, 493, 1966, 2093, 2127
BssMI	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
BssNAI	GTATAC	1 cut(s)	1993
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	3 cut(s)	300, 1966, 2093
Bst1107I	GTATAC	1 cut(s)	1993
Bst2UI	CCWGG	3 cut(s)	494, 2128, 2405
Bst4CI	ACNGT	1 cut(s)	1367
Bst6I	CTCTTC	2 cut(s)	160, 1728
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	4 cut(s)	107, 745, 1382, 1793
BstAUI	TGTACA	2 cut(s)	1367, 2363
BstBAI	YACGTR	1 cut(s)	868
BstC8I	GCNNGC	5 cut(s)	752, 1049, 1524, 1764, 1946
BstDEI	CTNAG	9 cut(s)	144, 309, 399, 769, 1029, 1146, 1860, 1874, 2334
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	5 cut(s)	1576, 1657, 1845, 1974, 2321
BstFNI	CGCG	2 cut(s)	104, 223
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	106, 114, 150
BstKTI	GATC	6 cut(s)	36, 394, 721, 1145, 2056, 2154
BstMAI	GTCTC	7 cut(s)	122, 438, 521, 1890, 1904, 2337, 2415
BstMBI	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 818, 968, 1402, 1744
BstNI	CCWGG	3 cut(s)	494, 2128, 2405
BstNSI	RCATGY	6 cut(s)	154, 289, 324, 1526, 1627, 1885
BstSCI	CCNGG	4 cut(s)	14, 492, 2126, 2403
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	3 cut(s)	387, 935, 1749
BstUI	CGCG	2 cut(s)	104, 223
BstV1I	GCAGC	8 cut(s)	102, 286, 697, 980, 1031, 1207, 1344, 1711
BstV2I	GAAGAC	2 cut(s)	57, 2316
BstX2I	RGATCY	2 cut(s)	2053, 2151
BstYI	RGATCY	2 cut(s)	2053, 2151
BstZ17I	GTATAC	1 cut(s)	1993
BsuRI	GGCC	8 cut(s)	101, 142, 515, 781, 1944, 1948, 2033, 2247
BtgZI	GCGATG	1 cut(s)	2331
BtsCI	GGATG	5 cut(s)	1576, 1657, 1845, 1974, 2321
BtsI	GCAGTG	2 cut(s)	1342, 1416
BtsIMutI	CAGTG	3 cut(s)	1342, 1416, 2266
BtuMI	TCGCGA	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	1112
Cac8I	GCNNGC	5 cut(s)	752, 1049, 1524, 1764, 1946
CciI	TCATGA	3 cut(s)	616, 2109, 2212
CfoI	GCGC	3 cut(s)	106, 114, 150
Cfr10I	RCCGGY	3 cut(s)	935, 1762, 1944
Cfr13I	GGNCC	8 cut(s)	460, 779, 1342, 1962, 2001, 2031, 2104, 2131
CseI	GACGC	3 cut(s)	17, 20, 2262
Csp6I	GTAC	5 cut(s)	1368, 1592, 1869, 2256, 2364
CspAI	ACCGGT	1 cut(s)	935
CspCI	CAANNNNNGTGG	2 cut(s)	1405, 1440
CviQI	GTAC	5 cut(s)	1368, 1592, 1869, 2256, 2364
DdeI	CTNAG	9 cut(s)	144, 309, 399, 769, 1029, 1146, 1860, 1874, 2334
DpnI	GATC	6 cut(s)	35, 393, 720, 1144, 2055, 2153
DpnII	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
DriI	GACNNNNNGTC	1 cut(s)	1960
EaeI	YGGCCR	4 cut(s)	513, 1942, 1946, 2245
Eam1104I	CTCTTC	2 cut(s)	160, 1728
Eam1105I	GACNNNNNGTC	1 cut(s)	1960
EarI	CTCTTC	2 cut(s)	160, 1728
Eco130I	CCWWGG	3 cut(s)	300, 1966, 2093
Eco147I	AGGCCT	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	6 cut(s)	460, 1342, 1962, 2001, 2104, 2131
Eco57I	CTGAAG	5 cut(s)	801, 1125, 2150, 2289, 2381
Eco72I	CACGTG	1 cut(s)	868
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	2001
EcoRII	CCWGG	3 cut(s)	492, 2126, 2403
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	3 cut(s)	300, 1966, 2093
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	3 cut(s)	300, 1966, 2093
FalI	AAGNNNNNCTT	2 cut(s)	2379, 2411
FaqI	GGGAC	5 cut(s)	23, 1615, 1948, 2069, 2144
FauNDI	CATATG	2 cut(s)	543, 2074
FblI	GTMKAC	1 cut(s)	1992
FokI	GGATG	5 cut(s)	1583, 1664, 1832, 1961, 2308
FseI	GGCCGGCC	1 cut(s)	1948
FspBI	CTAG	4 cut(s)	125, 294, 585, 846
GlaI	GCGC	3 cut(s)	105, 113, 149
GsaI	CCCAGC	1 cut(s)	2203
GsuI	CTGGAG	2 cut(s)	1872, 2387
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	8 cut(s)	101, 142, 515, 781, 1944, 1948, 2033, 2247
HapII	CCGG	4 cut(s)	16, 936, 1763, 1945
HgaI	GACGC	3 cut(s)	17, 20, 2262
HhaI	GCGC	3 cut(s)	106, 114, 150
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	3 cut(s)	104, 112, 148
HinP1I	GCGC	3 cut(s)	104, 112, 148
HincII	GTYRAC	2 cut(s)	208, 831
HindII	GTYRAC	2 cut(s)	208, 831
HindIII	AAGCTT	1 cut(s)	2279
HpaII	CCGG	4 cut(s)	16, 936, 1763, 1945
HphI	GGTGA	3 cut(s)	346, 1136, 1513
Hpy166II	GTNNAC	7 cut(s)	208, 551, 831, 901, 1345, 1747, 1993
Hpy8I	GTNNAC	7 cut(s)	208, 551, 831, 901, 1345, 1747, 1993
Hpy99I	CGWCG	4 cut(s)	58, 61, 64, 2278
HpyAV	CCTTC	9 cut(s)	451, 880, 987, 1001, 1089, 1203, 1636, 2035, 2405
HpyCH4III	ACNGT	1 cut(s)	1367
HpyCH4IV	ACGT	2 cut(s)	800, 867
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 818, 968, 1402, 1744
HpyF3I	CTNAG	9 cut(s)	144, 309, 399, 769, 1029, 1146, 1860, 1874, 2334
HpySE526I	ACGT	2 cut(s)	800, 867
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	3 cut(s)	104, 112, 148
KroI	GCCGGC	2 cut(s)	1762, 1944
KroNI	GCCGGC	2 cut(s)	1764, 1946
Kzo9I	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
LguI	GCTCTTC	1 cut(s)	1728
LmnI	GCTCC	6 cut(s)	163, 925, 1033, 1249, 1544, 2406
Lsp1109I	GCAGC	8 cut(s)	102, 286, 697, 980, 1031, 1207, 1344, 1711
LweI	GCATC	8 cut(s)	15, 307, 436, 608, 637, 736, 1906, 1983
MaeI	CTAG	4 cut(s)	125, 294, 585, 846
MaeII	ACGT	2 cut(s)	800, 867
MaeIII	GTNAC	6 cut(s)	172, 325, 1150, 1406, 1501, 1877
MalI	GATC	6 cut(s)	35, 393, 720, 1144, 2055, 2153
MboI	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	2053, 2151
MhlI	GDGCHC	3 cut(s)	387, 935, 1749
MlsI	TGGCCA	2 cut(s)	515, 2247
MluNI	TGGCCA	2 cut(s)	515, 2247
MlyI	GAGTC	3 cut(s)	440, 754, 1572
MmeI	TCCRAC	4 cut(s)	102, 1035, 1873, 2219
Mox20I	TGGCCA	2 cut(s)	515, 2247
Mph1103I	ATGCAT	1 cut(s)	322
MroNI	GCCGGC	2 cut(s)	1762, 1944
MroXI	GAANNNNTTC	3 cut(s)	481, 2163, 2412
MscI	TGGCCA	2 cut(s)	515, 2247
MseI	TTAA	8 cut(s)	108, 746, 926, 1281, 1383, 1794, 2295, 2342
MslI	CAYNNNNRTG	1 cut(s)	1900
Msp20I	TGGCCA	2 cut(s)	515, 2247
MspA1I	CMGCKG	2 cut(s)	605, 2223
MspCI	CTTAAG	4 cut(s)	107, 745, 1382, 1793
MspI	CCGG	4 cut(s)	16, 936, 1763, 1945
MspR9I	CCNGG	4 cut(s)	16, 494, 2128, 2405
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	494, 2128, 2405
MvnI	CGCG	2 cut(s)	104, 223
MwoI	GCNNNNNNNGC	5 cut(s)	194, 818, 968, 1402, 1744
NaeI	GCCGGC	2 cut(s)	1764, 1946
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	2 cut(s)	543, 2074
NdeII	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
NgoMIV	GCCGGC	2 cut(s)	1762, 1944
NlaIV	GGNNCC	7 cut(s)	159, 934, 1540, 1964, 2003, 2132, 2153
NmuCI	GTSAC	2 cut(s)	1406, 1501
NruI	TCGCGA	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	6 cut(s)	154, 289, 324, 1526, 1627, 1885
PaeI	GCATGC	1 cut(s)	1526
PagI	TCATGA	3 cut(s)	616, 2109, 2212
PaqCI	CACCTGC	1 cut(s)	1112
PasI	CCCWGGG	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	142
PciI	ACATGT	1 cut(s)	1881
PciSI	GCTCTTC	1 cut(s)	1728
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PdiI	GCCGGC	2 cut(s)	1764, 1946
PdmI	GAANNNNTTC	3 cut(s)	481, 2163, 2412
PfeI	GAWTC	9 cut(s)	263, 620, 890, 1112, 1265, 1660, 1689, 1856, 2264
PfoI	TCCNGGA	1 cut(s)	2403
PinAI	ACCGGT	1 cut(s)	935
PleI	GAGTC	3 cut(s)	439, 754, 1571
PmaCI	CACGTG	1 cut(s)	868
PmlI	CACGTG	1 cut(s)	868
PpsI	GAGTC	3 cut(s)	439, 754, 1571
Ppu21I	YACGTR	1 cut(s)	868
PpuMI	RGGWCCY	1 cut(s)	2001
PscI	ACATGT	1 cut(s)	1881
PsiI	TTATAA	1 cut(s)	2048
Psp5II	RGGWCCY	1 cut(s)	2001
Psp6I	CCWGG	3 cut(s)	492, 2126, 2403
PspCI	CACGTG	1 cut(s)	868
PspFI	CCCAGC	1 cut(s)	2199
PspGI	CCWGG	3 cut(s)	492, 2126, 2403
PspN4I	GGNNCC	7 cut(s)	159, 934, 1540, 1964, 2003, 2132, 2153
PspPI	GGNCC	8 cut(s)	460, 779, 1342, 1962, 2001, 2031, 2104, 2131
PspPPI	RGGWCCY	1 cut(s)	2001
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	2 cut(s)	2053, 2151
PvuII	CAGCTG	2 cut(s)	605, 2223
RigI	GGCCGGCC	1 cut(s)	1948
RruI	TCGCGA	1 cut(s)	223
RsaI	GTAC	5 cut(s)	1369, 1593, 1870, 2257, 2365
RsaNI	GTAC	5 cut(s)	1368, 1592, 1869, 2256, 2364
RseI	CAYNNNNRTG	1 cut(s)	1900
SapI	GCTCTTC	1 cut(s)	1728
SaqAI	TTAA	8 cut(s)	108, 746, 926, 1281, 1383, 1794, 2295, 2342
Sau3AI	GATC	6 cut(s)	33, 391, 718, 1142, 2053, 2151
Sau96I	GGNCC	8 cut(s)	460, 779, 1342, 1962, 2001, 2031, 2104, 2131
SchI	GAGTC	3 cut(s)	440, 754, 1572
ScrFI	CCNGG	4 cut(s)	16, 494, 2128, 2405
SduI	GDGCHC	3 cut(s)	387, 935, 1749
SfaNI	GCATC	8 cut(s)	15, 307, 436, 608, 637, 736, 1906, 1983
SfcI	CTRYAG	1 cut(s)	987
SgrAI	CRCCGGYG	1 cut(s)	935
SinI	GGWCC	6 cut(s)	460, 1342, 1962, 2001, 2104, 2131
SmiMI	CAYNNNNRTG	1 cut(s)	1900
SmlI	CTYRAG	6 cut(s)	107, 435, 714, 745, 1382, 1793
SmoI	CTYRAG	6 cut(s)	107, 435, 714, 745, 1382, 1793
SpeI	ACTAGT	2 cut(s)	293, 584
SphI	GCATGC	1 cut(s)	1526
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	88, 102, 118, 197, 2134
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	4 cut(s)	125, 294, 585, 846
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	4 cut(s)	14, 492, 2126, 2403
StyI	CCWWGG	3 cut(s)	300, 1966, 2093
TaaI	ACNGT	1 cut(s)	1367
TaiI	ACGT	2 cut(s)	803, 870
TaqI	TCGA	4 cut(s)	1443, 1658, 2236, 2276
TatI	WGTACW	2 cut(s)	1367, 2363
TauI	GCSGC	2 cut(s)	104, 200
TfiI	GAWTC	9 cut(s)	263, 620, 890, 1112, 1265, 1660, 1689, 1856, 2264
Tru1I	TTAA	8 cut(s)	108, 746, 926, 1281, 1383, 1794, 2295, 2342
Tru9I	TTAA	8 cut(s)	108, 746, 926, 1281, 1383, 1794, 2295, 2342
TscAI	CASTG	3 cut(s)	1342, 1423, 2266
TseFI	GTSAC	2 cut(s)	1406, 1501
TseI	GCWGC	8 cut(s)	90, 274, 710, 968, 1044, 1220, 1332, 1699
Tsp45I	GTSAC	2 cut(s)	1406, 1501
TspDTI	ATGAA	5 cut(s)	1746, 2061, 2091, 2154, 2229
TspRI	CASTG	3 cut(s)	1342, 1423, 2266
Vha464I	CTTAAG	4 cut(s)	107, 745, 1382, 1793
VneI	GTGCAC	1 cut(s)	1745
VpaK11BI	GGWCC	6 cut(s)	460, 1342, 1962, 2001, 2104, 2131
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	5 cut(s)	19, 373, 1165, 1704, 2067
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	6 cut(s)	154, 289, 324, 1526, 1627, 1885
XcmI	CCANNNNNNNNNTGG	2 cut(s)	470, 1956
XmiI	GTMKAC	1 cut(s)	1992
XmnI	GAANNNNTTC	3 cut(s)	481, 2163, 2412
XspI	CTAG	4 cut(s)	125, 294, 585, 846
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.