Rh5BG206500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003030
Physical Location & Seq
Forward (+)
23485672 .. 23488580
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG206500.1

Sequence Viewer

Length: 714 bp
ATGCAAGAAAACAGAATAAGCATGAGGCGTCTCCGAGTTTCTCGGAGCGACTTGGGTTTTCGCAACCTAGGTTTCGATTTGGCGGCGGCGAACTTCCCTCAGGCAAGGCAATCTGTCCTCAGGCAAGGCGGCGATCGTGGAGGGCAAAGATGCGATGGCGCGGGGCTGCGTCTCGGCGTTGATCGTGCGGTGCGGCGCGAGGTTTCTGGGTTGGAGGCCTCGCTGACCGTGTTTTTTGCTGGATTGGATCCGGTATTCGAGCGCCGTACAGCGTTGACGGTGATTGTCGGCTCTGAGCACGGCAGTAGTCAAGGCCGGTGGCTGGGATATGTAGATGGATGCTTCGATCTGAACGTCGCCGTTCTGAGACGTCGATTGAGGCTGTTCTTGGAGGGTGGTGGTTTTCAGGCGGTGACTCACGGCTATTTTCAGCAGGCTATTTTCATCCAGACGTCGGTGGACGGGTTGATGAGATGGGCAGGAAGGCCGCCGGAATTGATGGCGGCGAAGTGGCAGCAGAGGAGTTGGGCTCCTGCTAGGTCTTCTTCGTGGGCTTGGGTTTGGGCCTGGGTCTCTGGGCCTGGGCTCAACTTCGGGCTGATGGGGCAGAAGGCCTTGGTCTCTATGAAACAAGCTTCCAAGAAGGAGAAAGTGAAGAAGGTATTTGCTGGTATGAGCTCTAACTCGAAAGGGGAGGAGCTTGTTATTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

10.83

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 373, 455
AccII CGCG 2 cut(s) 161, 198
AciI CCGC 9 cut(s) 83, 86, 129, 161, 188, 193, 410, 488, 503
AclWI GGATC 2 cut(s) 242, 255
AcyI GRCGYC 3 cut(s) 28, 370, 452
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 322, 454
AjnI CCWGG 2 cut(s) 566, 580
AluBI AGCT 3 cut(s) 635, 678, 700
AluI AGCT 3 cut(s) 635, 678, 700
Alw21I GWGCWC 2 cut(s) 300, 680
Alw26I GTCTC 5 cut(s) 35, 176, 361, 577, 625
AlwI GGATC 2 cut(s) 242, 255
AoxI GGCC 6 cut(s) 216, 313, 485, 564, 578, 612
ApeKI GCWGC 2 cut(s) 166, 514
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 3 cut(s) 161, 198, 264
AspS9I GGNCC 2 cut(s) 564, 578
AsuHPI GGTGA 2 cut(s) 292, 424
AvrII CCTAGG 1 cut(s) 67
AxyI CCTNAGG 2 cut(s) 99, 119
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 3 cut(s) 532, 588, 680
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 300, 680
BbvI GCAGC 2 cut(s) 153, 526
BccI CCATC 5 cut(s) 149, 329, 468, 493, 595
BceAI ACGGC 4 cut(s) 249, 316, 344, 436
BciT130I CCWGG 2 cut(s) 568, 582
BcoDI GTCTC 5 cut(s) 35, 176, 361, 577, 625
BfaI CTAG 2 cut(s) 68, 537
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 8 cut(s) 84, 87, 130, 167, 194, 488, 504, 515
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 8 cut(s) 85, 88, 131, 168, 195, 489, 505, 516
Bme1390I CCNGG 2 cut(s) 568, 582
BmgT120I GGNCC 2 cut(s) 564, 578
BmiI GGNNCC 2 cut(s) 249, 531
BmrFI CCNGG 2 cut(s) 568, 582
BmsI GCATC 2 cut(s) 140, 329
BpiI GAAGAC 1 cut(s) 534
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BsaHI GRCGYC 3 cut(s) 28, 370, 452
BsaI GGTCTC 2 cut(s) 577, 625
BsaJI CCNNGG 4 cut(s) 67, 567, 581, 615
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 454
Bse118I RCCGGY 1 cut(s) 315
Bse21I CCTNAGG 2 cut(s) 99, 119
BseBI CCWGG 2 cut(s) 568, 582
BseDI CCNNGG 4 cut(s) 67, 567, 581, 615
BseGI GGATG 2 cut(s) 344, 444
BseLI CCNNNNNNNGG 2 cut(s) 322, 454
BseMII CTCAG 4 cut(s) 113, 133, 285, 356
BseRI GAGGAG 2 cut(s) 535, 710
BseXI GCAGC 2 cut(s) 153, 526
BseYI CCCAGC 1 cut(s) 322
Bsh1236I CGCG 2 cut(s) 161, 198
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 6 cut(s) 218, 315, 487, 566, 580, 614
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 300, 680
BsiSI CCGG 3 cut(s) 251, 316, 491
BslI CCNNNNNNNGG 2 cut(s) 322, 454
BsmAI GTCTC 5 cut(s) 35, 176, 361, 577, 625
BsmBI CGTCTC 3 cut(s) 35, 176, 361
BsnI GGCC 6 cut(s) 218, 315, 487, 566, 580, 614
Bso31I GGTCTC 2 cut(s) 577, 625
Bsp1286I GDGCHC 4 cut(s) 300, 532, 588, 680
Bsp143I GATC 4 cut(s) 133, 181, 247, 346
BspACI CCGC 9 cut(s) 83, 86, 129, 161, 188, 193, 410, 488, 503
BspANI GGCC 6 cut(s) 218, 315, 487, 566, 580, 614
BspCNI CTCAG 4 cut(s) 112, 132, 286, 357
BspFNI CGCG 2 cut(s) 161, 198
BspLI GGNNCC 2 cut(s) 249, 531
BspPI GGATC 2 cut(s) 242, 255
BspTNI GGTCTC 2 cut(s) 577, 625
BsrFI RCCGGY 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 4 cut(s) 67, 567, 581, 615
BssMI GATC 4 cut(s) 133, 181, 247, 346
BssNI GRCGYC 3 cut(s) 28, 370, 452
BssT1I CCWWGG 2 cut(s) 67, 615
Bst2UI CCWGG 2 cut(s) 568, 582
Bst4CI ACNGT 2 cut(s) 229, 280
BstACI GRCGYC 3 cut(s) 28, 370, 452
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 4 cut(s) 99, 119, 294, 365
BstF5I GGATG 2 cut(s) 344, 444
BstFNI CGCG 2 cut(s) 161, 198
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 3 cut(s) 161, 198, 264
BstKTI GATC 4 cut(s) 136, 184, 250, 349
BstMAI GTCTC 5 cut(s) 35, 176, 361, 577, 625
BstMBI GATC 4 cut(s) 133, 181, 247, 346
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 604
BstNI CCWGG 2 cut(s) 568, 582
BstSCI CCNGG 2 cut(s) 566, 580
BstUI CGCG 2 cut(s) 161, 198
BstV1I GCAGC 2 cut(s) 153, 526
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
Bsu36I CCTNAGG 2 cut(s) 99, 119
BsuRI GGCC 6 cut(s) 218, 315, 487, 566, 580, 614
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 344, 444
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 3 cut(s) 161, 198, 264
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 564, 578
CseI GACGC 2 cut(s) 17, 158
Csp6I GTAC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 299, 334
CviAII CATG 1 cut(s) 22
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 4 cut(s) 99, 119, 294, 365
DpnI GATC 4 cut(s) 135, 183, 249, 348
DpnII GATC 4 cut(s) 133, 181, 247, 346
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 67, 615
Eco147I AGGCCT 2 cut(s) 218, 614
Eco24I GRGCYC 3 cut(s) 532, 588, 680
Eco31I GGTCTC 2 cut(s) 577, 625
Eco53kI GAGCTC 1 cut(s) 678
Eco81I CCTNAGG 2 cut(s) 99, 119
EcoICRI GAGCTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 566, 580
EcoT14I CCWWGG 2 cut(s) 67, 615
EcoT38I GRGCYC 3 cut(s) 532, 588, 680
ErhI CCWWGG 2 cut(s) 67, 615
Esp3I CGTCTC 3 cut(s) 35, 176, 361
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 330, 626, 674
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 8 cut(s) 84, 87, 130, 167, 194, 488, 504, 515
FokI GGATG 2 cut(s) 351, 431
FriOI GRGCYC 3 cut(s) 532, 588, 680
Fsp4HI GCNGC 8 cut(s) 84, 87, 130, 167, 194, 488, 504, 515
FspBI CTAG 2 cut(s) 68, 537
GlaI GCGC 3 cut(s) 160, 197, 263
GluI GCNGC 8 cut(s) 84, 87, 130, 167, 194, 488, 504, 515
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 6 cut(s) 218, 315, 487, 566, 580, 614
HapII CCGG 3 cut(s) 251, 316, 491
HgaI GACGC 2 cut(s) 17, 158
HhaI GCGC 3 cut(s) 161, 198, 264
Hin1I GRCGYC 3 cut(s) 28, 370, 452
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 3 cut(s) 159, 196, 262
HinP1I GCGC 3 cut(s) 159, 196, 262
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 1 cut(s) 415
HpaII CCGG 3 cut(s) 251, 316, 491
HphI GGTGA 2 cut(s) 292, 424
Hpy166II GTNNAC 2 cut(s) 276, 460
Hpy188I TCNGA 5 cut(s) 35, 45, 295, 351, 366
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 2 cut(s) 276, 460
Hpy99I CGWCG 3 cut(s) 359, 375, 457
HpyAV CCTTC 4 cut(s) 477, 604, 637, 652
HpyCH4III ACNGT 2 cut(s) 229, 280
HpyCH4IV ACGT 3 cut(s) 354, 370, 452
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 604
HpyF3I CTNAG 4 cut(s) 99, 119, 294, 365
HpySE526I ACGT 3 cut(s) 354, 370, 452
Hsp92I GRCGYC 3 cut(s) 28, 370, 452
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 3 cut(s) 159, 196, 262
Kzo9I GATC 4 cut(s) 133, 181, 247, 346
LmnI GCTCC 3 cut(s) 45, 535, 697
Lsp1109I GCAGC 2 cut(s) 153, 526
LweI GCATC 2 cut(s) 140, 329
MaeI CTAG 2 cut(s) 68, 537
MaeII ACGT 3 cut(s) 354, 370, 452
MaeIII GTNAC 1 cut(s) 412
MalI GATC 4 cut(s) 135, 183, 249, 348
MboI GATC 4 cut(s) 133, 181, 247, 346
MboII GAAGA 3 cut(s) 534, 537, 667
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 4 cut(s) 300, 532, 588, 680
MluCI AATT 1 cut(s) 494
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 192
MspI CCGG 3 cut(s) 251, 316, 491
MspR9I CCNGG 2 cut(s) 568, 582
MvaI CCWGG 2 cut(s) 568, 582
MvnI CGCG 2 cut(s) 161, 198
MwoI GCNNNNNNNGC 1 cut(s) 604
NdeII GATC 4 cut(s) 133, 181, 247, 346
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 249, 531
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 412
PceI AGGCCT 2 cut(s) 218, 614
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PkrI GCNGC 8 cut(s) 85, 88, 131, 168, 195, 489, 505, 516
Ple19I CGATCG 1 cut(s) 136
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 566, 580
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 2 cut(s) 566, 580
PspN4I GGNNCC 2 cut(s) 249, 531
PspPI GGNCC 2 cut(s) 564, 578
PsuI RGATCY 1 cut(s) 247
PvuI CGATCG 1 cut(s) 136
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SacI GAGCTC 1 cut(s) 680
SatI GCNGC 8 cut(s) 84, 87, 130, 167, 194, 488, 504, 515
Sau3AI GATC 4 cut(s) 133, 181, 247, 346
Sau96I GGNCC 2 cut(s) 564, 578
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 568, 582
SduI GDGCHC 4 cut(s) 300, 532, 588, 680
SfaNI GCATC 2 cut(s) 140, 329
Sse9I AATT 1 cut(s) 494
SseBI AGGCCT 2 cut(s) 218, 614
SsiI CCGC 9 cut(s) 83, 86, 129, 161, 188, 193, 410, 488, 503
SspMI CTAG 2 cut(s) 68, 537
SstI GAGCTC 1 cut(s) 680
StuI AGGCCT 2 cut(s) 218, 614
StyD4I CCNGG 2 cut(s) 566, 580
StyI CCWWGG 2 cut(s) 67, 615
TaaI ACNGT 2 cut(s) 229, 280
TaiI ACGT 3 cut(s) 357, 373, 455
TaqI TCGA 5 cut(s) 75, 258, 345, 373, 686
TasI AATT 1 cut(s) 494
TauI GCSGC 6 cut(s) 86, 89, 132, 196, 490, 506
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 166, 514
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 433, 641
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 2 cut(s) 68, 537
ZraI GACGTC 2 cut(s) 371, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.