Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000227.1

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

154 .. 1065

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 470 bp

atggacagggacgcccggaatttgatgcgtccgatcaactccgatttcacttcgtcgtcgtcgtcttcctctaattccgaccttttccgcagcgttcaggccgcgcttaagcgccaccgccctctagagacaagcataaggcctaagcgcatgttggctccccgaagagaagtaactaaaagttcagcttcaagtgcggctgtcgttgacacaaagagttcgcgagatgtagctacacagggtcaggataatactgcaaaggaatcaagtgtgcagccacacgacatgcctactagtgccaaggaaactcaggaagatgcatgtgttacggcagtttccaattcaagcagtatcacccacacgtttgatgagaatttagatgtgcccatagatcaaactaagcctgacattggtgcttcctgtcattttgagtctcaagggattgatgctcaaaagaaggtccaattttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

6.41

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	104, 223
AciI	CCGC	4 cut(s)	88, 102, 118, 197
AcsI	RAATTY	2 cut(s)	19, 373
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	192, 345
AhlI	ACTAGT	1 cut(s)	293
AluBI	AGCT	2 cut(s)	188, 233
AluI	AGCT	2 cut(s)	188, 233
Alw26I	GTCTC	2 cut(s)	122, 438
AoxI	GGCC	2 cut(s)	99, 140
ApeKI	GCWGC	2 cut(s)	90, 274
ApoI	RAATTY	2 cut(s)	19, 373
AspLEI	GCGC	3 cut(s)	106, 114, 150
AspS9I	GGNCC	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	102, 286
BceAI	ACGGC	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	122, 438
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	2 cut(s)	125, 294
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	4 cut(s)	91, 102, 198, 275
BlsI	GCNGC	4 cut(s)	92, 103, 199, 276
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	15, 307, 436
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	102, 286
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	104, 223
BshFI	GGCC	2 cut(s)	101, 142
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	122, 438
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	101, 142
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	33, 391
Bsp68I	TCGCGA	1 cut(s)	223
BspACI	CCGC	4 cut(s)	88, 102, 118, 197
BspANI	GGCC	2 cut(s)	101, 142
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	104, 223
BspLI	GGNNCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	33, 391
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	144, 309, 399
BstFNI	CGCG	2 cut(s)	104, 223
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	106, 114, 150
BstKTI	GATC	2 cut(s)	36, 394
BstMAI	GTCTC	2 cut(s)	122, 438
BstMBI	GATC	2 cut(s)	33, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	3 cut(s)	154, 289, 324
BstSCI	CCNGG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	2 cut(s)	104, 223
BstV1I	GCAGC	2 cut(s)	102, 286
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	101, 142
BtuMI	TCGCGA	1 cut(s)	223
CfoI	GCGC	3 cut(s)	106, 114, 150
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	2 cut(s)	17, 20
CviAII	CATG	3 cut(s)	151, 286, 321
CviJI	RGCY	8 cut(s)	101, 142, 158, 188, 200, 233, 277, 403
CviKI_1	RGCY	8 cut(s)	101, 142, 158, 188, 200, 233, 277, 403
DdeI	CTNAG	3 cut(s)	144, 309, 399
DpnI	GATC	2 cut(s)	35, 393
DpnII	GATC	2 cut(s)	33, 391
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	154, 289, 324
FaiI	YATR	5 cut(s)	137, 152, 287, 322, 389
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	150, 285, 320
Fnu4HI	GCNGC	4 cut(s)	91, 102, 198, 275
Fsp4HI	GCNGC	4 cut(s)	91, 102, 198, 275
FspBI	CTAG	2 cut(s)	125, 294
GlaI	GCGC	3 cut(s)	105, 113, 149
GluI	GCNGC	4 cut(s)	91, 102, 198, 275
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	101, 142
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	2 cut(s)	17, 20
HhaI	GCGC	3 cut(s)	106, 114, 150
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	154, 289, 324
Hin6I	GCGC	3 cut(s)	104, 112, 148
HinP1I	GCGC	3 cut(s)	104, 112, 148
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	263, 431
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	33, 43, 79
Hpy188III	TCNNGA	4 cut(s)	125, 222, 245, 311
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	58, 61, 64
HpyAV	CCTTC	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	3 cut(s)	257, 274, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	144, 309, 399
HpySE526I	ACGT	1 cut(s)	362
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	154, 289, 324
HspAI	GCGC	3 cut(s)	104, 112, 148
Kzo9I	GATC	2 cut(s)	33, 391
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	29, 83, 224, 230, 296, 417, 433
Lsp1109I	GCAGC	2 cut(s)	102, 286
LweI	GCATC	3 cut(s)	15, 307, 436
MaeI	CTAG	2 cut(s)	125, 294
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	172, 325
MalI	GATC	2 cut(s)	35, 393
MboI	GATC	2 cut(s)	33, 391
MboII	GAAGA	3 cut(s)	57, 177, 326
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	5 cut(s)	19, 73, 340, 373, 464
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	79, 132
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	16
MvnI	CGCG	2 cut(s)	104, 223
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	33, 391
NlaIII	CATG	3 cut(s)	154, 289, 324
NlaIV	GGNNCC	1 cut(s)	159
NruI	TCGCGA	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	3 cut(s)	154, 289, 324
PceI	AGGCCT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	92, 103, 199, 276
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	91, 102, 198, 275
Sau3AI	GATC	2 cut(s)	33, 391
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	5 cut(s)	84, 190, 235, 365, 462
SfaNI	GCATC	3 cut(s)	15, 307, 436
SinI	GGWCC	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	107, 435
SmoI	CTYRAG	2 cut(s)	107, 435
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	5 cut(s)	19, 73, 340, 373, 464
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	4 cut(s)	88, 102, 118, 197
SspMI	CTAG	2 cut(s)	125, 294
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	365
TasI	AATT	5 cut(s)	19, 73, 340, 373, 464
TauI	GCSGC	2 cut(s)	104, 200
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	2 cut(s)	90, 274
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	2 cut(s)	19, 373
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	3 cut(s)	154, 289, 324
XspI	CTAG	2 cut(s)	125, 294
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.