Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Forward (+)

39477112 .. 39479069

Gene Structure 1958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTGTATAGCGGCGTTCGTGTGGCAGTCTCACCCACGCTACCCCTTCCTCCTCCTCCTCAACAGGGACGAATATTTCAACCGGGGAACGGCGGCTTTGCAATGGTGGGACGACTACCTCGGGATATTGGGCGGAAGAGACGCGGTGGAAGGTGGGACATGGCTGGCTTGTTCCAAGGATGGTAAGGTGGCTTTTCTCACTAATGTCAGAGAGCTCAACAGACTTGTGCAATGCAAGAGCAGAGGAGAACTCCCATCTCGTTTCTTGTCGGGCAAAAAGAGTCCGATGGAATTTGCAGAGGAAGTTGTTGAGGAGGCAGACAAGTACAATGGGTTTAACCTGATATTGGCTGATCTTTGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTAGCAATAGTTTCGAAGAGATGCTCAACAAGTATGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTATGGTACTAGAAGCACTGAAGCAGTGTCTGTCAGTACAAATGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

268

Amino Acids

30.75

Weight (kDa)

4.8

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TANGO2	PF05742	1 - 249	1e-73	Transport and Golgi organisation 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	4 cut(s)	11, 92, 132, 143
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	3 cut(s)	326, 685, 715
AfiI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 670, 671
AgsI	TTSAA	3 cut(s)	79, 656, 791
AluBI	AGCT	2 cut(s)	214, 752
AluI	AGCT	2 cut(s)	214, 752
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	6 cut(s)	33, 132, 486, 572, 579, 770
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	771
AsuC2I	CCSGG	2 cut(s)	83, 429
AsuHPI	GGTGA	3 cut(s)	23, 417, 721
AsuII	TTCGAA	1 cut(s)	504
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	3 cut(s)	173, 262, 280
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BcnI	CCSGG	2 cut(s)	83, 429
BcoDI	GTCTC	6 cut(s)	33, 132, 486, 572, 579, 770
BfaI	CTAG	1 cut(s)	687
BisI	GCNGC	2 cut(s)	12, 93
BlsI	GCNGC	2 cut(s)	13, 94
Bme1390I	CCNGG	2 cut(s)	83, 429
Bme18I	GGWCC	1 cut(s)	771
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	771
BmrFI	CCNGG	2 cut(s)	83, 429
BmsI	GCATC	2 cut(s)	442, 501
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	504
BpuMI	CCSGG	2 cut(s)	83, 429
BsaI	GGTCTC	2 cut(s)	572, 770
BsaJI	CCNNGG	5 cut(s)	82, 118, 174, 428, 470
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 670, 671
Bse3DI	GCAATG	3 cut(s)	107, 236, 462
BseDI	CCNNGG	5 cut(s)	82, 118, 174, 428, 470
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 670, 671
BseMI	GCAATG	3 cut(s)	107, 236, 462
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	5 cut(s)	41, 44, 47, 258, 326
BseYI	CCCAGC	1 cut(s)	752
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	82, 428
BslFI	GGGAC	3 cut(s)	80, 122, 169
BslI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 670, 671
BsmAI	GTCTC	6 cut(s)	33, 132, 486, 572, 579, 770
BsmBI	CGTCTC	2 cut(s)	132, 579
BsmFI	GGGAC	3 cut(s)	80, 122, 169
BsnI	GGCC	1 cut(s)	475
Bso31I	GGTCTC	2 cut(s)	572, 770
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	4 cut(s)	11, 92, 132, 143
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	504
BspTNI	GGTCTC	2 cut(s)	572, 770
BsrDI	GCAATG	3 cut(s)	107, 236, 462
BssECI	CCNNGG	5 cut(s)	82, 118, 174, 428, 470
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	2 cut(s)	174, 470
Bst6I	CTCTTC	3 cut(s)	130, 501, 786
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	165, 599
BstDEI	CTNAG	5 cut(s)	363, 417, 477, 491, 638
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	6 cut(s)	33, 132, 486, 572, 579, 770
BstMBI	GATC	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	81, 427
BstUI	CGCG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	414, 693, 708
Cac8I	GCNNGC	2 cut(s)	165, 599
CaiI	CAGNNNCTG	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	771
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	325, 684, 714
CviAII	CATG	4 cut(s)	159, 370, 437, 764
CviQI	GTAC	3 cut(s)	325, 684, 714
DdeI	CTNAG	5 cut(s)	363, 417, 477, 491, 638
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	3 cut(s)	130, 501, 786
EarI	CTCTTC	3 cut(s)	130, 501, 786
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	174, 470
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	572, 770
Eco47I	GGWCC	1 cut(s)	771
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	174, 470
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	174, 470
Esp3I	CGTCTC	2 cut(s)	132, 579
FaeI	CATG	4 cut(s)	162, 373, 440, 767
FaqI	GGGAC	3 cut(s)	80, 122, 169
FatI	CATG	4 cut(s)	158, 369, 436, 763
Fnu4HI	GCNGC	2 cut(s)	12, 93
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	12, 93
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	2 cut(s)	12, 93
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	2 cut(s)	82, 428
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	162, 373, 440, 767
HinfI	GANTC	3 cut(s)	280, 433, 464
HpaII	CCGG	2 cut(s)	82, 428
HphI	GGTGA	3 cut(s)	23, 417, 721
Hpy188I	TCNGA	2 cut(s)	209, 285
Hpy188III	TCNNGA	3 cut(s)	121, 620, 784
HpyAV	CCTTC	3 cut(s)	55, 143, 790
HpyCH4V	TGCA	7 cut(s)	100, 229, 234, 296, 455, 609, 668
HpyF3I	CTNAG	5 cut(s)	363, 417, 477, 491, 638
Hsp92II	CATG	4 cut(s)	162, 373, 440, 767
Kzo9I	GATC	1 cut(s)	352
LweI	GCATC	2 cut(s)	442, 501
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	2 cut(s)	379, 727
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	147, 518, 803
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	289
MseI	TTAA	2 cut(s)	336, 545
MspI	CCGG	2 cut(s)	82, 428
MspR9I	CCNGG	2 cut(s)	83, 429
MvnI	CGCG	1 cut(s)	143
NciI	CCSGG	2 cut(s)	83, 429
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	162, 373, 440, 767
NmuCI	GTSAC	1 cut(s)	727
NspV	TTCGAA	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	433, 464
PkrI	GCNGC	2 cut(s)	13, 94
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	771
PstNI	CAGNNNCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	326, 685, 715
RsaNI	GTAC	3 cut(s)	325, 684, 714
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	336, 545
SatI	GCNGC	2 cut(s)	12, 93
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	771
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	83, 429
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	442, 501
SfuI	TTCGAA	1 cut(s)	504
SinI	GGWCC	1 cut(s)	771
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	4 cut(s)	11, 92, 132, 143
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	81, 427
StyI	CCWWGG	2 cut(s)	174, 470
TaqI	TCGA	1 cut(s)	504
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	1 cut(s)	290
TatI	WGTACW	2 cut(s)	324, 713
TauI	GCSGC	2 cut(s)	14, 95
TfiI	GAWTC	2 cut(s)	433, 464
Tru1I	TTAA	2 cut(s)	336, 545
Tru9I	TTAA	2 cut(s)	336, 545
TscAI	CASTG	3 cut(s)	421, 700, 708
TseFI	GTSAC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	425, 549, 780
TspRI	CASTG	3 cut(s)	421, 700, 708
VpaK11BI	GGWCC	1 cut(s)	771
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.