Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003030

Physical Location & Seq

Genomic Coordinates Reverse (-)

55922156 .. 55926562

Gene Structure 4407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGGACAGGGACGCCCGGAATTTGATGCGTCCGATCAACTCCGATTTCACTTCGTCGTCGTCGTCTTCCTCTAATTCCGACCTTTTCCGCAGCGTTCAGGCCGCGCTTAAGCGCCACCGCCCTCTAGAGACAAGCATAAGGCCTAAGCGCATGTTGGCTCCCCGAAGAGAAGTAACTAAAAGTTCGGCTTCAAGTGCGGCTGTCATTGACACAAAGAATTCGCGAGATGTAGCTACGCAGGGTCAGGATAATACTGCAAAGGAATCAAGTGTGCAGCCACACGACATGCCTACTAGTGCCAAGGAATCTCAGGAAGATGCATGTGTTACAGCAGTTTCCAATTCAAGCAGTATCACCCACACGTTTGATGAGAATTTAGATGTGCCCATAGATCAAACTAAACCTGACATTGGTGCTTCCTGTCATTTTGAGTCTCAAGGGATTGATGCTCAAAAGAAGGTCCAATTTTCAATTGGAACTGGTGCTTCTTCCCTGGAAATGGAGTGGGTTTCTGCTAGTCAAGCAGAGGCATCAGCTGTCATAAATCATGATTCAAAGCATCAGAATATTCTGAATACAGAAGCGGATATCTGTTTGAAGTCTGATGGTGGGATGTCCTTGTTGGCAAAGAGAACAACTGCCGCTCAAGATCAGTTGCATCAATTCAGGAACTTCTTAAGCCAGCCTATGACTCAATCCTCAGTTGTTGGGCCATCGTGTGCTACTACAACGTCTGTCCATGCTACTTCAGCACCCATGTCAACAACTTATTGTTCTAGTTTGCATAGTGGTTATCACGTGCCAGTAGAACCCTTGAAGGATTCTAATGTAAACCCTCAACCATCAAATGCTCCTTTAAGGGGCACCGGTGCAATGTCCAATCCCCAGATAGCTGTTGCAGCCCAACCTTCTACCTCTGCAGTTGATACCCAAAACGAAGGTAAGGAATATGACCTTTCTAAGGAGCAAAAAGGCTGCAAGCTGTCGGAGAGTGAATATCAGGAAAACCCTTCTCTTGCCGATGTGAAGCAAACTGAAGTTGAATCGTATGCAGGTGATGTTGCCAATGCACGATCTCAGGTTACTTTGCCCCCAAATTTATGTTCTGATACAAAGTCAGAGCCTTCAAAATCAGAAAAACAAGAAAAGGCTGCAAGTGGTAAAGTTGTTCCAGCTCCTCGTAAAAAAAATAAAGATTCTGACTTGTTTATTAAAGTAAATGGGAAGCTCTATCAGAGGCTTGGAAAAATAGGTAGTGGAGGCAGCAGTGAGGTCCACAAAGTTATATCATCAGACTGTACAATCTATGCTCTTAAGAAAATCAAGCTGAAAGGGCGTGACTATGCCACTGCTTTTGGTTTTTGTCAGGAAATCGAATATCTGAATAAGTTGAAAGGGAAGAACCACATCATACAGCTTATAGACTATGAGGTGACAGATAAGGCTTTACTGCATGCAGTATTGAGTGGCTCCATAAATAATAAAGATGGCAGAGTCAAGGATGATGGGTATATATACATGGTACTTGAATATGGAGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAAGGAAATGGATGGGTCGAATCAGACCATAGATGAGAACTGGCTACGATTCTACTGGCAGCAAATTCTTCTGGCAGTCAGCACCATACATGAAGAGCGAATTGTGCACTCTGACTTGAAGCCGGCTAATTTCCTGCTTGTCAGAGGCTCTCTTAAGCTGATTGATTTTGGGATTGCTAAAGCTATAATGAGTGATACAACCAACATCCAACGGGATTCTCAGGTGGGTACACTAAGTTACATGTCTCCAGAGGCATTCATGTGCAATGAGACTGATGCAGATGGAAACACTATCAAGTGTGGCCGGCCATCAGACATTTGGTCCCTTGGTTGCATCCTTTATCAGATGGTATACGGGAGGACCCCGTTTGCAGACTACAAGACCTTCTGGGCCAAGTTCAAAGTTATAACAGATCCTAACCATCAAATTTCATATGAACCAGTCCCTAACCCTTGGCTTCTGGACCTCATGAGAAAGTGCCTTGCCTGGGACCGCAATGAAAGATGGAGGATCCCTGAACTACTTCAGCACCCTTTTCTTGTTCCCCCAGTTCCAACCCAGCCATCTTCTCATGATCACAGCTGTAAATTGCTTCGACTTATTGGCCAAAATTGTACCAGTGATTCTGAAGCGTCGAAGCTTGTTTGTCAGCTTAAACAACTGCTTGAAGACCCTTTGCCATCCACAACGTCTCAGTTATTAACATCGCGTGACCAACAATGTACATTGCTCTCCCAAGTGTCAAAAGTTTGCCTTCAGCTCCAGGAACACTTTCAGAGAGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Pkinase

Protein Analysis

786

Amino Acids

86.99

Weight (kDa)

6.42

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	411 - 704	1.6e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	417 - 700	8.4e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77720
fragaria_vesca	FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330 FvH4_2g26330
malus_domestica	MD15G1356500.v1.1
prunus_persica	Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1 Prupe.1G503700_v2.0.a1
pyrus_communis	pycom15g31860
rosa_chinensis	RchiOBHm_Chr6g0294911
rosa_laevigata	RLG00000011828 RLG00000019151
rosa_multiflora	Rmu_sc0000245.1_g000041 Rmu_sc0008966.1_g000001 Rmu_sc0021726.1_g000004 Rmu_sc0039793.1_g000001 Rmu_ssc0000227.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172850
rosa_rugosa	Rorug06G0247700 Rorug06G0247800 Rorug06G0247900 Rorug06G0248000 Rorug06G0248000 Rorug06G0248100 Rorug06G0248200
rosa_samantha	Rh5BG206500 Rh5BG222800 Rh6AG361400 Rh6BG368800 Rh6CG375400 Rh6DG361800
rosa_wichuraiana	Rw6G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1979
AarI	CACCTGC	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1043
AccB1I	GGYRCC	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	644
AccI	GTMKAC	1 cut(s)	1923
AccII	CGCG	3 cut(s)	104, 223, 2281
AciI	CCGC	7 cut(s)	88, 102, 118, 197, 584, 642, 2065
AclWI	GGATC	3 cut(s)	1979, 2077, 2090
AcoI	YGGCCR	3 cut(s)	1873, 1877, 2176
AcsI	RAATTY	6 cut(s)	19, 217, 373, 1096, 1635, 1998
AcuI	CTGAAG	5 cut(s)	732, 1056, 2081, 2220, 2312
AcvI	CACGTG	1 cut(s)	799
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	5 cut(s)	1300, 1524, 1801, 2188, 2296
AfiI	CCNNNNNNNGG	6 cut(s)	410, 499, 860, 961, 1569, 2059
AflII	CTTAAG	4 cut(s)	107, 676, 1313, 1724
AflIII	ACRYGT	2 cut(s)	360, 1812
AgeI	ACCGGT	1 cut(s)	866
AhdI	GACNNNNNGTC	1 cut(s)	1891
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	3 cut(s)	492, 2057, 2334
AjuI	GAANNNNNNNTTGG	2 cut(s)	1087, 1119
Alw21I	GWGCWC	1 cut(s)	1680
Alw26I	GTCTC	6 cut(s)	122, 438, 1821, 1835, 2268, 2346
Alw44I	GTGCAC	1 cut(s)	1676
AlwI	GGATC	3 cut(s)	1979, 2077, 2090
AoxI	GGCC	7 cut(s)	99, 140, 710, 1873, 1877, 1962, 2176
ApaLI	GTGCAC	1 cut(s)	1676
ApeKI	GCWGC	7 cut(s)	90, 274, 899, 975, 1151, 1263, 1630
ApoI	RAATTY	6 cut(s)	19, 217, 373, 1096, 1635, 1998
AsiGI	ACCGGT	1 cut(s)	866
Asp700I	GAANNNNTTC	2 cut(s)	2094, 2343
AspLEI	GCGC	3 cut(s)	106, 114, 150
AspS9I	GGNCC	8 cut(s)	460, 710, 1273, 1893, 1932, 1962, 2035, 2062
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	346, 1067, 1444
AvaII	GGWCC	6 cut(s)	460, 1273, 1893, 1932, 2035, 2062
BaeGI	GKGCMC	3 cut(s)	387, 866, 1680
BalI	TGGCCA	1 cut(s)	2178
BamHI	GGATCC	1 cut(s)	2082
BanI	GGYRCC	1 cut(s)	863
BbrPI	CACGTG	1 cut(s)	799
BbsI	GAAGAC	2 cut(s)	57, 2247
Bbv12I	GWGCWC	1 cut(s)	1680
BbvI	GCAGC	7 cut(s)	102, 286, 911, 962, 1138, 1275, 1642
BciT130I	CCWGG	3 cut(s)	494, 2059, 2336
BclI	TGATCA	1 cut(s)	2146
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	6 cut(s)	122, 438, 1821, 1835, 2268, 2346
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	4 cut(s)	125, 294, 516, 777
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	4 cut(s)	107, 676, 1313, 1724
BfuAI	ACCTGC	1 cut(s)	1043
Bme1390I	CCNGG	4 cut(s)	16, 494, 2059, 2336
Bme18I	GGWCC	6 cut(s)	460, 1273, 1893, 1932, 2035, 2062
BmeRI	GACNNNNNGTC	1 cut(s)	1891
BmgT120I	GGNCC	8 cut(s)	460, 710, 1273, 1893, 1932, 1962, 2035, 2062
BmiI	GGNNCC	7 cut(s)	159, 865, 1471, 1895, 1934, 2063, 2084
BmrFI	CCNGG	4 cut(s)	16, 494, 2059, 2336
BmrI	ACTGGG	1 cut(s)	2114
BmsI	GCATC	8 cut(s)	15, 307, 436, 539, 568, 667, 1837, 1914
BmuI	ACTGGG	1 cut(s)	2114
BpiI	GAAGAC	2 cut(s)	57, 2247
BpmI	CTGGAG	2 cut(s)	1803, 2318
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	420, 630
BpuMI	CCSGG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	799
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	5 cut(s)	300, 492, 1897, 2024, 2058
BsaWI	WCCGGW	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	6 cut(s)	410, 499, 860, 961, 1569, 2059
Bse118I	RCCGGY	3 cut(s)	866, 1693, 1875
Bse1I	ACTGG	7 cut(s)	484, 803, 1616, 1631, 2012, 2120, 2190
Bse3DI	GCAATG	4 cut(s)	879, 1843, 2074, 2297
BseBI	CCWGG	3 cut(s)	494, 2059, 2336
BseDI	CCNNGG	5 cut(s)	300, 492, 1897, 2024, 2058
BseGI	GGATG	6 cut(s)	618, 1507, 1588, 1776, 1905, 2252
BseLI	CCNNNNNNNGG	6 cut(s)	410, 499, 860, 961, 1569, 2059
BseMI	GCAATG	4 cut(s)	879, 1843, 2074, 2297
BseMII	CTCAG	5 cut(s)	323, 714, 1091, 1805, 2279
BseNI	ACTGG	7 cut(s)	484, 803, 1616, 1631, 2012, 2120, 2190
BseRI	GAGGAG	1 cut(s)	1167
BseSI	GKGCMC	3 cut(s)	387, 866, 1680
BseXI	GCAGC	7 cut(s)	102, 286, 911, 962, 1138, 1275, 1642
BseYI	CCCAGC	1 cut(s)	2130
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	3 cut(s)	104, 223, 2281
BshFI	GGCC	7 cut(s)	101, 142, 712, 1875, 1879, 1964, 2178
BshNI	GGYRCC	1 cut(s)	863
BshTI	ACCGGT	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	1680
BsiSI	CCGG	4 cut(s)	16, 867, 1694, 1876
BslFI	GGGAC	5 cut(s)	23, 1546, 1879, 2000, 2075
BslI	CCNNNNNNNGG	6 cut(s)	410, 499, 860, 961, 1569, 2059
BsmAI	GTCTC	6 cut(s)	122, 438, 1821, 1835, 2268, 2346
BsmBI	CGTCTC	1 cut(s)	2268
BsmFI	GGGAC	5 cut(s)	23, 1546, 1879, 2000, 2075
BsmI	GAATGC	1 cut(s)	1826
BsnI	GGCC	7 cut(s)	101, 142, 712, 1875, 1879, 1964, 2178
Bsp1286I	GDGCHC	3 cut(s)	387, 866, 1680
Bsp1407I	TGTACA	2 cut(s)	1298, 2294
Bsp143I	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
Bsp68I	TCGCGA	1 cut(s)	223
BspACI	CCGC	7 cut(s)	88, 102, 118, 197, 584, 642, 2065
BspANI	GGCC	7 cut(s)	101, 142, 712, 1875, 1879, 1964, 2178
BspCNI	CTCAG	5 cut(s)	322, 713, 1090, 1804, 2278
BspFNI	CGCG	3 cut(s)	104, 223, 2281
BspHI	TCATGA	3 cut(s)	547, 2040, 2143
BspLI	GGNNCC	7 cut(s)	159, 865, 1471, 1895, 1934, 2063, 2084
BspMAI	CTGCAG	1 cut(s)	922
BspMI	ACCTGC	1 cut(s)	1043
BspPI	GGATC	3 cut(s)	1979, 2077, 2090
BspQI	GCTCTTC	1 cut(s)	1659
BspT107I	GGYRCC	1 cut(s)	863
BspTI	CTTAAG	4 cut(s)	107, 676, 1313, 1724
BsrBI	CCGCTC	1 cut(s)	644
BsrDI	GCAATG	4 cut(s)	879, 1843, 2074, 2297
BsrFI	RCCGGY	3 cut(s)	866, 1693, 1875
BsrGI	TGTACA	2 cut(s)	1298, 2294
BsrI	ACTGG	7 cut(s)	484, 803, 1616, 1631, 2012, 2120, 2190
BssAI	RCCGGY	3 cut(s)	866, 1693, 1875
BssECI	CCNNGG	5 cut(s)	300, 492, 1897, 2024, 2058
BssMI	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
BssNAI	GTATAC	1 cut(s)	1924
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	3 cut(s)	300, 1897, 2024
Bst1107I	GTATAC	1 cut(s)	1924
Bst2UI	CCWGG	3 cut(s)	494, 2059, 2336
Bst4CI	ACNGT	1 cut(s)	1298
Bst6I	CTCTTC	2 cut(s)	160, 1659
BstACI	GRCGYC	1 cut(s)	12
BstAFI	CTTAAG	4 cut(s)	107, 676, 1313, 1724
BstAUI	TGTACA	2 cut(s)	1298, 2294
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	5 cut(s)	683, 980, 1455, 1695, 1877
BstDEI	CTNAG	8 cut(s)	144, 309, 700, 960, 1077, 1791, 1805, 2265
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	6 cut(s)	618, 1507, 1588, 1776, 1905, 2252
BstFNI	CGCG	3 cut(s)	104, 223, 2281
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	106, 114, 150
BstKTI	GATC	7 cut(s)	36, 394, 652, 1076, 1987, 2085, 2149
BstMAI	GTCTC	6 cut(s)	122, 438, 1821, 1835, 2268, 2346
BstMBI	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 521, 749, 899, 1333, 1675
BstNI	CCWGG	3 cut(s)	494, 2059, 2336
BstNSI	RCATGY	6 cut(s)	154, 289, 324, 1457, 1558, 1816
BstSCI	CCNGG	4 cut(s)	14, 492, 2057, 2334
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	3 cut(s)	387, 866, 1680
BstUI	CGCG	3 cut(s)	104, 223, 2281
BstV1I	GCAGC	7 cut(s)	102, 286, 911, 962, 1138, 1275, 1642
BstV2I	GAAGAC	2 cut(s)	57, 2247
BstX2I	RGATCY	2 cut(s)	1984, 2082
BstYI	RGATCY	2 cut(s)	1984, 2082
BstZ17I	GTATAC	1 cut(s)	1924
BsuRI	GGCC	7 cut(s)	101, 142, 712, 1875, 1879, 1964, 2178
BtgZI	GCGATG	1 cut(s)	2262
BtsCI	GGATG	6 cut(s)	618, 1507, 1588, 1776, 1905, 2252
BtsI	GCAGTG	2 cut(s)	1273, 1347
BtsIMutI	CAGTG	3 cut(s)	1273, 1347, 2197
BtuMI	TCGCGA	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	1043
Cac8I	GCNNGC	5 cut(s)	683, 980, 1455, 1695, 1877
CciI	TCATGA	3 cut(s)	547, 2040, 2143
CfoI	GCGC	3 cut(s)	106, 114, 150
Cfr10I	RCCGGY	3 cut(s)	866, 1693, 1875
Cfr13I	GGNCC	8 cut(s)	460, 710, 1273, 1893, 1932, 1962, 2035, 2062
CseI	GACGC	3 cut(s)	17, 20, 2193
Csp6I	GTAC	5 cut(s)	1299, 1523, 1800, 2187, 2295
CspAI	ACCGGT	1 cut(s)	866
CspCI	CAANNNNNGTGG	2 cut(s)	1336, 1371
CviQI	GTAC	5 cut(s)	1299, 1523, 1800, 2187, 2295
DdeI	CTNAG	8 cut(s)	144, 309, 700, 960, 1077, 1791, 1805, 2265
DpnI	GATC	7 cut(s)	35, 393, 651, 1075, 1986, 2084, 2148
DpnII	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
DriI	GACNNNNNGTC	1 cut(s)	1891
EaeI	YGGCCR	3 cut(s)	1873, 1877, 2176
Eam1104I	CTCTTC	2 cut(s)	160, 1659
Eam1105I	GACNNNNNGTC	1 cut(s)	1891
EarI	CTCTTC	2 cut(s)	160, 1659
Eco130I	CCWWGG	3 cut(s)	300, 1897, 2024
Eco147I	AGGCCT	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	6 cut(s)	460, 1273, 1893, 1932, 2035, 2062
Eco57I	CTGAAG	5 cut(s)	732, 1056, 2081, 2220, 2312
Eco72I	CACGTG	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	1 cut(s)	1932
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	492, 2057, 2334
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	300, 1897, 2024
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	3 cut(s)	300, 1897, 2024
Esp3I	CGTCTC	1 cut(s)	2268
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 2310, 2342
FaqI	GGGAC	5 cut(s)	23, 1546, 1879, 2000, 2075
FauNDI	CATATG	1 cut(s)	2005
FbaI	TGATCA	1 cut(s)	2146
FblI	GTMKAC	1 cut(s)	1923
FokI	GGATG	6 cut(s)	625, 1514, 1595, 1763, 1892, 2239
FseI	GGCCGGCC	1 cut(s)	1879
FspBI	CTAG	4 cut(s)	125, 294, 516, 777
GlaI	GCGC	3 cut(s)	105, 113, 149
GsaI	CCCAGC	1 cut(s)	2134
GsuI	CTGGAG	2 cut(s)	1803, 2318
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	7 cut(s)	101, 142, 712, 1875, 1879, 1964, 2178
HapII	CCGG	4 cut(s)	16, 867, 1694, 1876
HgaI	GACGC	3 cut(s)	17, 20, 2193
HhaI	GCGC	3 cut(s)	106, 114, 150
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	3 cut(s)	104, 112, 148
HinP1I	GCGC	3 cut(s)	104, 112, 148
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	2210
HpaII	CCGG	4 cut(s)	16, 867, 1694, 1876
HphI	GGTGA	3 cut(s)	346, 1067, 1444
Hpy166II	GTNNAC	6 cut(s)	762, 832, 1276, 1678, 1802, 1924
Hpy8I	GTNNAC	6 cut(s)	762, 832, 1276, 1678, 1802, 1924
Hpy99I	CGWCG	4 cut(s)	58, 61, 64, 2209
HpyAV	CCTTC	9 cut(s)	451, 811, 918, 932, 1020, 1134, 1567, 1966, 2336
HpyCH4III	ACNGT	1 cut(s)	1298
HpyCH4IV	ACGT	4 cut(s)	362, 731, 798, 2261
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 521, 749, 899, 1333, 1675
HpyF3I	CTNAG	8 cut(s)	144, 309, 700, 960, 1077, 1791, 1805, 2265
HpySE526I	ACGT	4 cut(s)	362, 731, 798, 2261
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	3 cut(s)	104, 112, 148
KroI	GCCGGC	2 cut(s)	1693, 1875
KroNI	GCCGGC	2 cut(s)	1695, 1877
Ksp22I	TGATCA	1 cut(s)	2146
Kzo9I	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
LguI	GCTCTTC	1 cut(s)	1659
LmnI	GCTCC	6 cut(s)	163, 856, 964, 1180, 1475, 2337
Lsp1109I	GCAGC	7 cut(s)	102, 286, 911, 962, 1138, 1275, 1642
LweI	GCATC	8 cut(s)	15, 307, 436, 539, 568, 667, 1837, 1914
MaeI	CTAG	4 cut(s)	125, 294, 516, 777
MaeII	ACGT	4 cut(s)	362, 731, 798, 2261
MaeIII	GTNAC	7 cut(s)	172, 325, 1081, 1337, 1432, 1808, 2282
MalI	GATC	7 cut(s)	35, 393, 651, 1075, 1986, 2084, 2148
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
MboII	GAAGA	9 cut(s)	57, 177, 326, 480, 1411, 1631, 1676, 2130, 2252
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	1984, 2082
MhlI	GDGCHC	3 cut(s)	387, 866, 1680
MlsI	TGGCCA	1 cut(s)	2178
MluNI	TGGCCA	1 cut(s)	2178
MlyI	GAGTC	3 cut(s)	440, 685, 1503
MmeI	TCCRAC	4 cut(s)	102, 966, 1804, 2150
Mox20I	TGGCCA	1 cut(s)	2178
Mph1103I	ATGCAT	1 cut(s)	322
MroNI	GCCGGC	2 cut(s)	1693, 1875
MroXI	GAANNNNTTC	2 cut(s)	2094, 2343
MscI	TGGCCA	1 cut(s)	2178
MseI	TTAA	8 cut(s)	108, 677, 857, 1212, 1314, 1725, 2226, 2273
MslI	CAYNNNNRTG	1 cut(s)	1831
Msp20I	TGGCCA	1 cut(s)	2178
MspA1I	CMGCKG	2 cut(s)	536, 2154
MspCI	CTTAAG	4 cut(s)	107, 676, 1313, 1724
MspI	CCGG	4 cut(s)	16, 867, 1694, 1876
MspR9I	CCNGG	4 cut(s)	16, 494, 2059, 2336
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	1826
MvaI	CCWGG	3 cut(s)	494, 2059, 2336
MvnI	CGCG	3 cut(s)	104, 223, 2281
MwoI	GCNNNNNNNGC	6 cut(s)	194, 521, 749, 899, 1333, 1675
NaeI	GCCGGC	2 cut(s)	1695, 1877
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	2005
NdeII	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
NgoMIV	GCCGGC	2 cut(s)	1693, 1875
NlaIV	GGNNCC	7 cut(s)	159, 865, 1471, 1895, 1934, 2063, 2084
NmuCI	GTSAC	3 cut(s)	1337, 1432, 2282
NruI	TCGCGA	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	6 cut(s)	154, 289, 324, 1457, 1558, 1816
PaeI	GCATGC	1 cut(s)	1457
PagI	TCATGA	3 cut(s)	547, 2040, 2143
PaqCI	CACCTGC	1 cut(s)	1043
PceI	AGGCCT	1 cut(s)	142
PciI	ACATGT	1 cut(s)	1812
PciSI	GCTCTTC	1 cut(s)	1659
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	1 cut(s)	1826
PdiI	GCCGGC	2 cut(s)	1695, 1877
PdmI	GAANNNNTTC	2 cut(s)	2094, 2343
PfoI	TCCNGGA	1 cut(s)	2334
PinAI	ACCGGT	1 cut(s)	866
PleI	GAGTC	3 cut(s)	439, 685, 1502
PmaCI	CACGTG	1 cut(s)	799
PmlI	CACGTG	1 cut(s)	799
PpsI	GAGTC	3 cut(s)	439, 685, 1502
Ppu21I	YACGTR	1 cut(s)	799
PpuMI	RGGWCCY	1 cut(s)	1932
PscI	ACATGT	1 cut(s)	1812
PsiI	TTATAA	1 cut(s)	1979
Psp5II	RGGWCCY	1 cut(s)	1932
Psp6I	CCWGG	3 cut(s)	492, 2057, 2334
PspCI	CACGTG	1 cut(s)	799
PspFI	CCCAGC	1 cut(s)	2130
PspGI	CCWGG	3 cut(s)	492, 2057, 2334
PspN4I	GGNNCC	7 cut(s)	159, 865, 1471, 1895, 1934, 2063, 2084
PspPI	GGNCC	8 cut(s)	460, 710, 1273, 1893, 1932, 1962, 2035, 2062
PspPPI	RGGWCCY	1 cut(s)	1932
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	1984, 2082
PvuII	CAGCTG	2 cut(s)	536, 2154
RigI	GGCCGGCC	1 cut(s)	1879
RruI	TCGCGA	1 cut(s)	223
RsaI	GTAC	5 cut(s)	1300, 1524, 1801, 2188, 2296
RsaNI	GTAC	5 cut(s)	1299, 1523, 1800, 2187, 2295
RseI	CAYNNNNRTG	1 cut(s)	1831
SapI	GCTCTTC	1 cut(s)	1659
SaqAI	TTAA	8 cut(s)	108, 677, 857, 1212, 1314, 1725, 2226, 2273
Sau3AI	GATC	7 cut(s)	33, 391, 649, 1073, 1984, 2082, 2146
Sau96I	GGNCC	8 cut(s)	460, 710, 1273, 1893, 1932, 1962, 2035, 2062
SchI	GAGTC	3 cut(s)	440, 685, 1503
ScrFI	CCNGG	4 cut(s)	16, 494, 2059, 2336
SduI	GDGCHC	3 cut(s)	387, 866, 1680
SfaNI	GCATC	8 cut(s)	15, 307, 436, 539, 568, 667, 1837, 1914
SfcI	CTRYAG	1 cut(s)	918
SgrAI	CRCCGGYG	1 cut(s)	866
SinI	GGWCC	6 cut(s)	460, 1273, 1893, 1932, 2035, 2062
SmiMI	CAYNNNNRTG	1 cut(s)	1831
SmlI	CTYRAG	6 cut(s)	107, 435, 645, 676, 1313, 1724
SmoI	CTYRAG	6 cut(s)	107, 435, 645, 676, 1313, 1724
SpeI	ACTAGT	1 cut(s)	293
SphI	GCATGC	1 cut(s)	1457
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	7 cut(s)	88, 102, 118, 197, 584, 642, 2065
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	4 cut(s)	125, 294, 516, 777
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	4 cut(s)	14, 492, 2057, 2334
StyI	CCWWGG	3 cut(s)	300, 1897, 2024
TaaI	ACNGT	1 cut(s)	1298
TaiI	ACGT	4 cut(s)	365, 734, 801, 2264
TaqI	TCGA	4 cut(s)	1374, 1589, 2167, 2207
TatI	WGTACW	2 cut(s)	1298, 2294
TauI	GCSGC	3 cut(s)	104, 200, 644
Tru1I	TTAA	8 cut(s)	108, 677, 857, 1212, 1314, 1725, 2226, 2273
Tru9I	TTAA	8 cut(s)	108, 677, 857, 1212, 1314, 1725, 2226, 2273
TscAI	CASTG	3 cut(s)	1273, 1354, 2197
TseFI	GTSAC	3 cut(s)	1337, 1432, 2282
TseI	GCWGC	7 cut(s)	90, 274, 899, 975, 1151, 1263, 1630
Tsp45I	GTSAC	3 cut(s)	1337, 1432, 2282
TspDTI	ATGAA	5 cut(s)	1677, 1819, 1992, 2022, 2085
TspRI	CASTG	3 cut(s)	1273, 1354, 2197
Vha464I	CTTAAG	4 cut(s)	107, 676, 1313, 1724
VneI	GTGCAC	1 cut(s)	1676
VpaK11BI	GGWCC	6 cut(s)	460, 1273, 1893, 1932, 2035, 2062
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	6 cut(s)	19, 217, 373, 1096, 1635, 1998
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	6 cut(s)	154, 289, 324, 1457, 1558, 1816
XcmI	CCANNNNNNNNNTGG	2 cut(s)	470, 1887
XmiI	GTMKAC	1 cut(s)	1923
XmnI	GAANNNNTTC	2 cut(s)	2094, 2343
XspI	CTAG	4 cut(s)	125, 294, 516, 777
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.