Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Reverse (-)

34699273 .. 34701254

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAACTGAGGTTCAAAGCTGGCCATACGACTTCCCAAGTTCGGAAGACTTTCTATCATCGGATCAACGCGGTACTGTTACCGGCAGATTACTTGTACGCGACGGGTATATCAGTACTGAAGACATATTCGGAAATGGTACACTGGTAGGGTTGGCAGCTCCAGGAGATGCTGGATCATGGCAACTAGATTGCAAGGGTTACCAATTTTGGACCAAAGCAAACGATCAAGGCTTCTTCTCTATAAGTGGAATACGTCCAGGGATCTATAATGTTTATGCATGGGTTCCTGGTTTTATTGGTGACTATCGACATGATGCTGAAGTAACTATAACTCCAGGTTGTAATGTTGATGTGGGTACACTTGTATATGAACCTCCAAGAAGTGGCCCAACTTTCTGGGAAATAGGCATCCCAGACCGAACTGCAGCAGAGTTTTATATTCCTGATCCTAATCCAAACTACATTAACAAACTCTACGTCAATCACACTGACAGGTTTAGGCAATATGGATTATGGGAAAGATATGCAGAGCTGTATCCTTACAATGATTTGGTTTACACAGTAGGTGTTAACGATTATCGAAAAGATTTTTACTTCGCTCAGGTTACTAGGAAGACAGGTAATAACACATACCAAGGATCAACATGGCAGATTAAGTTCACACTTGACACTGTGGGCAAGAACAATACCTACACATTACGAATAGCACTGGCAACAGCACATGTTTCTGAATTACAAGTATTACTTGCTCACTCTTACAACTTCATAACCATTAACAGAAATGTTCGGATCAACGACCTAGAAGCGAGCAATCCTCTATTTTCTACAGGACAAATTGGAAACGACAATACGATAGCAAGGCATGGAATTCATGGGCTGTATGGGTTGTACAGTGTCGGCATTCCAGGTGCTCAGCTGCTGGAAGGGAACAATACCATTTTTCTAACTCGAGCATTGAGTATAAGTCCTTTCCAAGGAATTATGTACGACTATATTCGTTTAGAAGGTCCCGCTTCTTCCAACAACGAAAGTCTGGGAACCAGTTCTTCGGAATATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

355

Amino Acids

39.74

Weight (kDa)

5.01

Isoelectric Point (pI)

18.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_3	PF14686	46 - 118	8.9e-25	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	132 - 335	7.1e-46	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccII	CGCG	2 cut(s)	72, 102
AciI	CCGC	2 cut(s)	72, 1014
AclWI	GGATC	6 cut(s)	72, 184, 272, 443, 649, 800
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	870
AcuI	CTGAAG	2 cut(s)	141, 342
AfaI	GTAC	7 cut(s)	76, 99, 118, 142, 361, 893, 989
AfiI	CCNNNNNNNGG	3 cut(s)	43, 386, 977
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	5 cut(s)	163, 259, 289, 337, 907
AluBI	AGCT	4 cut(s)	21, 161, 535, 919
AluI	AGCT	4 cut(s)	21, 161, 535, 919
Alw21I	GWGCWC	1 cut(s)	916
AlwI	GGATC	6 cut(s)	72, 184, 272, 443, 649, 800
AlwNI	CAGNNNCTG	1 cut(s)	922
Ama87I	CYCGRG	1 cut(s)	951
AoxI	GGCC	2 cut(s)	23, 388
ApeKI	GCWGC	3 cut(s)	158, 428, 919
ApoI	RAATTY	1 cut(s)	870
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
Asp700I	GAANNNNTTC	2 cut(s)	51, 1045
AspS9I	GGNCC	3 cut(s)	213, 389, 1010
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	2 cut(s)	213, 1010
BaeI	ACNNNNGTAYC	4 cut(s)	132, 165, 351, 384
BalI	TGGCCA	1 cut(s)	25
BbsI	GAAGAC	3 cut(s)	54, 129, 623
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	3 cut(s)	170, 440, 906
BciT130I	CCWGG	5 cut(s)	165, 261, 291, 339, 909
BciVI	GTATCC	1 cut(s)	549
BfaI	CTAG	3 cut(s)	188, 612, 803
BfmI	CTRYAG	2 cut(s)	426, 828
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	3 cut(s)	159, 429, 920
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	3 cut(s)	160, 430, 921
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	5 cut(s)	165, 261, 291, 339, 909
Bme18I	GGWCC	2 cut(s)	213, 1010
BmeT110I	CYCGRG	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	213, 389, 1010
BmiI	GGNNCC	3 cut(s)	288, 1012, 1042
BmrFI	CCNGG	5 cut(s)	165, 261, 291, 339, 909
BmsI	GCATC	3 cut(s)	160, 307, 420
BpiI	GAAGAC	3 cut(s)	54, 129, 623
BplI	GAGNNNNNCTC	2 cut(s)	802, 834
BpmI	CTGGAG	2 cut(s)	147, 321
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	260, 637, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 386, 977
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	150, 717, 1044
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	5 cut(s)	165, 261, 291, 339, 909
BseDI	CCNNGG	3 cut(s)	260, 637, 976
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	43, 386, 977
BseMII	CTCAG	2 cut(s)	617, 929
BseNI	ACTGG	3 cut(s)	150, 717, 1044
BseXI	GCAGC	3 cut(s)	170, 440, 906
Bsh1236I	CGCG	2 cut(s)	72, 102
BshFI	GGCC	2 cut(s)	25, 390
BsiHKAI	GWGCWC	1 cut(s)	916
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	996
BslI	CCNNNNNNNGG	3 cut(s)	43, 386, 977
BsmFI	GGGAC	1 cut(s)	996
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	2 cut(s)	25, 390
BsoBI	CYCGRG	1 cut(s)	951
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
Bsp1720I	GCTNAGC	1 cut(s)	915
BspACI	CCGC	2 cut(s)	72, 1014
BspANI	GGCC	2 cut(s)	25, 390
BspCNI	CTCAG	2 cut(s)	616, 928
BspFNI	CGCG	2 cut(s)	72, 102
BspLI	GGNNCC	3 cut(s)	288, 1012, 1042
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	6 cut(s)	72, 184, 272, 443, 649, 800
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	150, 717, 1044
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	260, 637, 976
BssMI	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
BssT1I	CCWWGG	2 cut(s)	637, 976
Bst2UI	CCWGG	5 cut(s)	165, 261, 291, 339, 909
Bst4CI	ACNGT	4 cut(s)	79, 565, 676, 896
BstAUI	TGTACA	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	23, 811
BstDEI	CTNAG	3 cut(s)	9, 603, 915
BstEII	GGTNACC	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	975
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	72, 102
BstKTI	GATC	7 cut(s)	67, 179, 229, 267, 451, 644, 795
BstMBI	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
BstNI	CCWGG	5 cut(s)	165, 261, 291, 339, 909
BstNSI	RCATGY	1 cut(s)	728
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	5 cut(s)	163, 259, 289, 337, 907
BstSFI	CTRYAG	2 cut(s)	426, 828
BstUI	CGCG	2 cut(s)	72, 102
BstV1I	GCAGC	3 cut(s)	170, 440, 906
BstV2I	GAAGAC	3 cut(s)	54, 129, 623
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	25, 390
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	5 cut(s)	143, 489, 672, 710, 901
Cac8I	GCNNGC	2 cut(s)	23, 811
CaiI	CAGNNNCTG	1 cut(s)	922
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	213, 389, 1010
Csp6I	GTAC	7 cut(s)	75, 98, 117, 141, 360, 892, 988
CviAII	CATG	7 cut(s)	180, 282, 314, 648, 725, 866, 875
CviJI	RGCY	8 cut(s)	21, 25, 161, 234, 390, 535, 880, 919
CviKI_1	RGCY	8 cut(s)	21, 25, 161, 234, 390, 535, 880, 919
CviQI	GTAC	7 cut(s)	75, 98, 117, 141, 360, 892, 988
DdeI	CTNAG	3 cut(s)	9, 603, 915
DpnI	GATC	7 cut(s)	66, 178, 228, 266, 450, 643, 794
DpnII	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
EaeI	YGGCCR	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	637, 976
Eco47I	GGWCC	2 cut(s)	213, 1010
Eco57I	CTGAAG	2 cut(s)	141, 342
Eco88I	CYCGRG	1 cut(s)	951
Eco91I	GGTNACC	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoO65I	GGTNACC	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	5 cut(s)	163, 259, 289, 337, 907
EcoT14I	CCWWGG	2 cut(s)	637, 976
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	637, 976
FaeI	CATG	7 cut(s)	183, 285, 317, 651, 728, 869, 878
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	1 cut(s)	996
FatI	CATG	7 cut(s)	179, 281, 313, 647, 724, 865, 874
FauI	CCCGC	1 cut(s)	1021
Fnu4HI	GCNGC	3 cut(s)	159, 429, 920
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	159, 429, 920
FspBI	CTAG	3 cut(s)	188, 612, 803
GluI	GCNGC	3 cut(s)	159, 429, 920
GsuI	CTGGAG	2 cut(s)	147, 321
HaeIII	GGCC	2 cut(s)	25, 390
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	7 cut(s)	183, 285, 317, 651, 728, 869, 878
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	5 cut(s)	143, 362, 559, 574, 663
Hpy188I	TCNGA	6 cut(s)	46, 64, 134, 733, 792, 1054
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	5 cut(s)	143, 362, 559, 574, 663
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	920, 1001
HpyCH4III	ACNGT	4 cut(s)	79, 565, 676, 896
HpyCH4IV	ACGT	2 cut(s)	256, 480
HpyCH4V	TGCA	4 cut(s)	195, 281, 428, 530
HpyF3I	CTNAG	3 cut(s)	9, 603, 915
HpySE526I	ACGT	2 cut(s)	256, 480
Hsp92II	CATG	7 cut(s)	183, 285, 317, 651, 728, 869, 878
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	3 cut(s)	170, 440, 906
LweI	GCATC	3 cut(s)	160, 307, 420
MaeI	CTAG	3 cut(s)	188, 612, 803
MaeII	ACGT	2 cut(s)	256, 480
MaeIII	GTNAC	5 cut(s)	79, 200, 302, 325, 607
MalI	GATC	7 cut(s)	66, 178, 228, 266, 450, 643, 794
MboI	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
MboII	GAAGA	6 cut(s)	59, 134, 229, 628, 1011, 1041
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	916
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	5 cut(s)	206, 734, 837, 870, 981
MluNI	TGGCCA	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	1047
MnlI	CCTC	3 cut(s)	4, 387, 828
Mox20I	TGGCCA	1 cut(s)	25
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	2 cut(s)	51, 1045
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	4 cut(s)	468, 573, 657, 777
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	5 cut(s)	165, 261, 291, 339, 909
Mva1269I	GAATGC	1 cut(s)	903
MvaI	CCWGG	5 cut(s)	165, 261, 291, 339, 909
MvnI	CGCG	2 cut(s)	72, 102
NdeII	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
NlaIII	CATG	7 cut(s)	183, 285, 317, 651, 728, 869, 878
NlaIV	GGNNCC	3 cut(s)	288, 1012, 1042
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	951
PciI	ACATGT	1 cut(s)	724
PctI	GAATGC	1 cut(s)	903
PdmI	GAANNNNTTC	2 cut(s)	51, 1045
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	160, 430, 921
PpuMI	RGGWCCY	1 cut(s)	1010
PscI	ACATGT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	1010
Psp6I	CCWGG	5 cut(s)	163, 259, 289, 337, 907
PspEI	GGTNACC	1 cut(s)	200
PspGI	CCWGG	5 cut(s)	163, 259, 289, 337, 907
PspN4I	GGNNCC	3 cut(s)	288, 1012, 1042
PspPI	GGNCC	3 cut(s)	213, 389, 1010
PspPPI	RGGWCCY	1 cut(s)	1010
PspXI	VCTCGAGB	1 cut(s)	951
PsrI	GAACNNNNNNTAC	2 cut(s)	677, 709
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	7 cut(s)	76, 99, 118, 142, 361, 893, 989
RsaNI	GTAC	7 cut(s)	75, 98, 117, 141, 360, 892, 988
SaqAI	TTAA	4 cut(s)	468, 573, 657, 777
SatI	GCNGC	3 cut(s)	159, 429, 920
Sau3AI	GATC	7 cut(s)	64, 176, 226, 264, 448, 641, 792
Sau96I	GGNCC	3 cut(s)	213, 389, 1010
ScaI	AGTACT	1 cut(s)	118
ScrFI	CCNGG	5 cut(s)	165, 261, 291, 339, 909
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	3 cut(s)	160, 307, 420
SfcI	CTRYAG	2 cut(s)	426, 828
Sfr274I	CTCGAG	1 cut(s)	951
SinI	GGWCC	2 cut(s)	213, 1010
SlaI	CTCGAG	1 cut(s)	951
SmlI	CTYRAG	1 cut(s)	951
SmoI	CTYRAG	1 cut(s)	951
Sse9I	AATT	5 cut(s)	206, 734, 837, 870, 981
SsiI	CCGC	2 cut(s)	72, 1014
SspMI	CTAG	3 cut(s)	188, 612, 803
StyD4I	CCNGG	5 cut(s)	163, 259, 289, 337, 907
StyI	CCWWGG	2 cut(s)	637, 976
TaaI	ACNGT	4 cut(s)	79, 565, 676, 896
TaiI	ACGT	2 cut(s)	259, 483
TaqI	TCGA	3 cut(s)	310, 583, 952
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	206, 734, 837, 870, 981
TatI	WGTACW	2 cut(s)	116, 891
Tru1I	TTAA	4 cut(s)	468, 573, 657, 777
Tru9I	TTAA	4 cut(s)	468, 573, 657, 777
TscAI	CASTG	5 cut(s)	150, 496, 679, 717, 901
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	3 cut(s)	158, 428, 919
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	387, 757, 863
TspRI	CASTG	5 cut(s)	150, 496, 679, 717, 901
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	213, 1010
XagI	CCTNNNNNAGG	1 cut(s)	975
XapI	RAATTY	1 cut(s)	870
XceI	RCATGY	1 cut(s)	728
XhoI	CTCGAG	1 cut(s)	951
XmnI	GAANNNNTTC	2 cut(s)	51, 1045
XspI	CTAG	3 cut(s)	188, 612, 803
ZrmI	AGTACT	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.