Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Forward (+)

27385732 .. 27388398

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCTGAAACTCTCTCCACCTAAACCCATGATCTCCAACATCCAAATTGCGCCGGAAGTTGCGCCGGAAGAGGTTCTCCTCACGAAAATACTACAGAAAAAGCTCGAGAATACCGATCAGAATACCGTTCTCGGAGCCTCCATAGTGGAGTACCAGCTTCATTACATCAGTGGGAGCCCTTGTTACAACGGCACAATTATTTTTCAGAACGGTGACACAAAAGACGTGTCTTTTATTCCCTTTGATAAAGCAGAAGGCAAGAAAGTTTGTGATATATACACTTATAGCACAAATATCTGTGATGAAAGGGTTCTTAGGCCCTGGTACGTTTCGTATTGTGAGGATATTTCCCAACACATTATTTGCTATGACCGGTTCCACGACTTTTTAAAAGATTGGCTGCCAATGTGGAACATAAAAAATAGTGTTAAAGATGCATATGGTTTGCCTCACTCAGTAATTAAGACACAAATCAGCAAGCTATTGAAATCTGTGAATAACATTCACAAGAGCGGACTGCTTCACCTATCACTCTCTGATATCTCTAACTATGTTGTTATTGACAACAATTGGTATGTTATTAATGTCGGTGGCAATCTTAACCAATCCAATAGACAGCAGATGGTCATAAAGGACTTCCAAAATTTTGGTAGCATGCTTGAGAAAAATGTTCTCTTAGACACTTCATGGCAAGAAAGGAATGACTTCTTAAACATATTTGCCAGTACAAATGTTTCTTCTTCCCGACTTGCCCAGATTCTATTGGACAATGTATTCACAAAATCTTCATATGATCGACTTCAAATGTTTTCAAAGATTTATCATGGATGGAAGACCCGTAGTCGCAATTGCAATATGTTAAAAAATGCCATTTGTTCTAAAAAATTTGATCACTATATTACTAACGATGGATGGGACAACGTTGATATGGGGAAGCTTTTGTGTAAAGTTTACTGGCATAATAACAGCATTGAGAAGAACAAGTACAATGGACAACAAATAATGAGCTTAATGAAGTTTTGCCGCAATGTTTTTGAACATTATCACCAATATGGTGGTAATGTAAATGTCATTGAGAAGAAGGTGAGACAATTATGGCCCGGATTTTTAGAAACACTGCTTTATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

377

Amino Acids

43.96

Weight (kDa)

8.65

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	513
AciI	CCGC	2 cut(s)	513, 1024
AclI	AACGTT	1 cut(s)	921
AcsI	RAATTY	2 cut(s)	643, 884
AfaI	GTAC	4 cut(s)	152, 326, 727, 986
AflIII	ACRYGT	1 cut(s)	225
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	487, 803, 813, 1037
AhdI	GACNNNNNGTC	1 cut(s)	840
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	5 cut(s)	103, 157, 481, 937, 1008
AluI	AGCT	5 cut(s)	103, 157, 481, 937, 1008
Alw26I	GTCTC	1 cut(s)	1081
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	317, 1097
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	2 cut(s)	643, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AseI	ATTAAT	1 cut(s)	582
AsiGI	ACCGGT	1 cut(s)	372
Asp700I	GAANNNNTTC	3 cut(s)	72, 309, 704
AspLEI	GCGC	2 cut(s)	52, 64
AspS9I	GGNCC	2 cut(s)	318, 1098
AsuC2I	CCSGG	1 cut(s)	1101
AsuHPI	GGTGA	4 cut(s)	224, 515, 1037, 1096
AvaI	CYCGRG	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	968, 1000
BbsI	GAAGAC	1 cut(s)	839
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	4 cut(s)	616, 822, 902, 906
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	1101
BcoDI	GTCTC	1 cut(s)	1081
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	401, 1024
BlsI	GCNGC	2 cut(s)	402, 1025
Bme1390I	CCNGG	2 cut(s)	322, 1101
BmeRI	GACNNNNNGTC	1 cut(s)	840
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	318, 1098
BmiI	GGNNCC	3 cut(s)	136, 176, 377
BmrFI	CCNGG	2 cut(s)	322, 1101
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	1101
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	723, 959
Bse3DI	GCAATG	1 cut(s)	1033
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	3 cut(s)	39, 833, 917
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	723, 959
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	387
BshFI	GGCC	2 cut(s)	319, 1099
BshTI	ACCGGT	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	53, 65, 373, 1101
BslFI	GGGAC	1 cut(s)	929
BsmAI	GTCTC	1 cut(s)	1081
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	319, 1099
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	30, 115, 793, 889
BspACI	CCGC	2 cut(s)	513, 1024
BspANI	GGCC	2 cut(s)	319, 1099
BspCNI	CTCAG	1 cut(s)	467
BspLI	GGNNCC	3 cut(s)	136, 176, 377
BsrBI	CCGCTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	723, 959
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	4 cut(s)	30, 115, 793, 889
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	127, 212
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	479, 656
BstDEI	CTNAG	3 cut(s)	314, 454, 676
BstF5I	GGATG	3 cut(s)	39, 833, 917
BstHHI	GCGC	2 cut(s)	52, 64
BstKTI	GATC	4 cut(s)	33, 118, 796, 892
BstMAI	GTCTC	1 cut(s)	1081
BstMBI	GATC	4 cut(s)	30, 115, 793, 889
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	320, 1099
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	387
BstV2I	GAAGAC	1 cut(s)	839
BstXI	CCANNNNNNTGG	2 cut(s)	647, 1055
BsuRI	GGCC	2 cut(s)	319, 1099
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	39, 833, 917
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	2 cut(s)	175, 1115
Cac8I	GCNNGC	2 cut(s)	479, 656
CfoI	GCGC	2 cut(s)	52, 64
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	318, 1098
Csp6I	GTAC	4 cut(s)	151, 325, 726, 985
CspAI	ACCGGT	1 cut(s)	372
CviAII	CATG	4 cut(s)	28, 655, 687, 824
CviQI	GTAC	4 cut(s)	151, 325, 726, 985
DdeI	CTNAG	3 cut(s)	314, 454, 676
DpnI	GATC	4 cut(s)	32, 117, 795, 891
DpnII	GATC	4 cut(s)	30, 115, 793, 889
DraI	TTTAAA	1 cut(s)	390
DriI	GACNNNNNGTC	1 cut(s)	840
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	4 cut(s)	31, 658, 690, 827
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	4 cut(s)	27, 654, 686, 823
FauNDI	CATATG	2 cut(s)	439, 790
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	401, 1024
FokI	GGATG	3 cut(s)	26, 840, 924
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	401, 1024
GlaI	GCGC	2 cut(s)	51, 63
GluI	GCNGC	2 cut(s)	401, 1024
HaeIII	GGCC	2 cut(s)	319, 1099
HapII	CCGG	4 cut(s)	53, 65, 373, 1101
HhaI	GCGC	2 cut(s)	52, 64
Hin1II	CATG	4 cut(s)	31, 658, 690, 827
Hin6I	GCGC	2 cut(s)	50, 62
HinP1I	GCGC	2 cut(s)	50, 62
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	4 cut(s)	53, 65, 373, 1101
HphI	GGTGA	4 cut(s)	224, 515, 1037, 1096
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	4 cut(s)	120, 134, 207, 538
Hpy188III	TCNNGA	3 cut(s)	82, 106, 744
Hpy8I	GTNNAC	1 cut(s)	952
HpyAV	CCTTC	2 cut(s)	248, 1075
HpyCH4III	ACNGT	2 cut(s)	127, 212
HpyCH4IV	ACGT	3 cut(s)	225, 327, 921
HpyCH4V	TGCA	2 cut(s)	437, 852
HpyF3I	CTNAG	3 cut(s)	314, 454, 676
HpySE526I	ACGT	3 cut(s)	225, 327, 921
Hsp92II	CATG	4 cut(s)	31, 658, 690, 827
HspAI	GCGC	2 cut(s)	50, 62
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	4 cut(s)	30, 115, 793, 889
LmnI	GCTCC	2 cut(s)	134, 174
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	1 cut(s)	424
MaeII	ACGT	3 cut(s)	225, 327, 921
MaeIII	GTNAC	2 cut(s)	182, 212
MalI	GATC	4 cut(s)	32, 117, 795, 891
MbiI	CCGCTC	1 cut(s)	513
MboI	GATC	4 cut(s)	30, 115, 793, 889
MboII	GAAGA	7 cut(s)	80, 729, 732, 777, 844, 988, 1090
MfeI	CAATTG	2 cut(s)	568, 847
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	8 cut(s)	45, 195, 459, 568, 643, 847, 884, 1091
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	64, 89, 148, 334, 459
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	3 cut(s)	72, 309, 704
MseI	TTAA	8 cut(s)	389, 429, 462, 582, 600, 710, 860, 1010
MslI	CAYNNNNRTG	1 cut(s)	1050
MspI	CCGG	4 cut(s)	53, 65, 373, 1101
MspR9I	CCNGG	2 cut(s)	322, 1101
MunI	CAATTG	2 cut(s)	568, 847
MvaI	CCWGG	1 cut(s)	322
NciI	CCSGG	1 cut(s)	1101
NdeI	CATATG	2 cut(s)	439, 790
NdeII	GATC	4 cut(s)	30, 115, 793, 889
NlaIII	CATG	4 cut(s)	31, 658, 690, 827
NlaIV	GGNNCC	3 cut(s)	136, 176, 377
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	658
PaeI	GCATGC	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	3 cut(s)	72, 309, 704
PfeI	GAWTC	1 cut(s)	757
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	402, 1025
PshBI	ATTAAT	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	136, 176, 377
PspPI	GGNCC	2 cut(s)	318, 1098
RsaI	GTAC	4 cut(s)	152, 326, 727, 986
RsaNI	GTAC	4 cut(s)	151, 325, 726, 985
RseI	CAYNNNNRTG	1 cut(s)	1050
SaqAI	TTAA	8 cut(s)	389, 429, 462, 582, 600, 710, 860, 1010
SatI	GCNGC	2 cut(s)	401, 1024
Sau3AI	GATC	4 cut(s)	30, 115, 793, 889
Sau96I	GGNCC	2 cut(s)	318, 1098
ScrFI	CCNGG	2 cut(s)	322, 1101
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	1050
SmlI	CTYRAG	2 cut(s)	104, 659
SmoI	CTYRAG	2 cut(s)	104, 659
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	8 cut(s)	45, 195, 459, 568, 643, 847, 884, 1091
SsiI	CCGC	2 cut(s)	513, 1024
StyD4I	CCNGG	2 cut(s)	320, 1099
TaaI	ACNGT	2 cut(s)	127, 212
TaiI	ACGT	3 cut(s)	228, 330, 924
TaqI	TCGA	2 cut(s)	105, 796
TasI	AATT	8 cut(s)	45, 195, 459, 568, 643, 847, 884, 1091
TatI	WGTACW	2 cut(s)	725, 984
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	8 cut(s)	389, 429, 462, 582, 600, 710, 860, 1010
Tru9I	TTAA	8 cut(s)	389, 429, 462, 582, 600, 710, 860, 1010
TscAI	CASTG	2 cut(s)	175, 1122
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	5 cut(s)	149, 318, 675, 777, 1028
TspRI	CASTG	2 cut(s)	175, 1122
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	2 cut(s)	643, 884
XceI	RCATGY	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	104
XmnI	GAANNNNTTC	3 cut(s)	72, 309, 704
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.