Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Forward (+)

60438188 .. 60459727

Gene Structure 21540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGTCGACCTTTCCCGTTGGATTAGGTAAAGGACCAATCAGCACCATTTTTTCGCTTTCCACAATAACATGGATTTCGCCAAAGTTGGGTACCATGATTCTTCTCCTCTTCTCCAGCCAGACATTTCTGGATGAGCATTTATTCATCCAAGCCACTGCTTCAGAAAATACAACAGGCCTGCAACTGCATATCTTCAATCAATATGTGGTCATGGATAATGGCATTCTCCAAGTCAATCTTTCAAAACCAGAGGGAATGGTTACCGGAATACAATATAAAGGCATCGACAATCTGCTTGAAGTTCTTGAAGATGAAACCAATAGAGGGTACTGGGATATGGTTTGGTCTGCACCGGGAATTTCGAGAAAGAAAGGCGCATTTGATAGGATGGAAGGAACAAATTTTACGGTTATAGTGGAAACTGAGGATCAGATAGAGCTTTCATTCACCAGAATGTGGGATCCCTCTTTAGAGGGCAAAGTTGTCCCTTTAAACATAGACAAAAGGTTCGTGTTGCTTCGTAACTCTTCGGGTTTCTACACTTACGCCATTTATGAACACTTGAAGGAGTGGCCTGCTTTCAACTTGACCAACACCAGGACTGTGTTTAAGCTCAGAAAAGACAAGTTTCATTACATGGCAATATCAGACAGCAGGCAAAGACACATGCCCCTTCCCGATGATCGGTCAGAAAAAAGAGGGCAAGCCCTGGCTTACCCGGAGGCAGTCTTGCTCGTCAATCCGGTCGAGCCAGAGTTCAAAGGAGAGGTGGATGATAAATATCAATATTCGATTGAGAACATACATAATCGGGTGCACGGATGGATAGCAAATGACTCACAGGTTGGATTTTGGCAGATTACTCCCAGTGAAGAGTTTAAATCTGGAGGTCCCTTCAAGCAGTGCCTTACTTCACATGTGGGACCCATTACCCTTGCCATCTTTCATAGTACCCATTACTCAGGAGAGGAACTGATAATACAATTTGGGTCCAATGAGCCATGGAAGAAAGTGTTTGGCCCAGTTTTTTTCTATCTTAATTCTTTGGTTGATGGAGCTAACCCTTTCCAGTGTCTATGGGAGGATGCTAAGCAACAGATGAACGATGAAGTTGAAAGGTGGCCATATGATTTTCCAGCTTCAAAGGACTTTCTGTCGCCTAAGCAACGAGGAACAGTTAGCGGCAGACTATTGGTCCGCGAAAGGTATGTTACGGATGATAAAGACGTACCTGGAAATGGAACTTTGGTAGGATTGGCAGCTCCAGGAGTTGTTGGATCATGGCAGTTAGAATGCAAGGGTTACCAATTCTGGACCAAAGCAGACAATAATGGCTACTTCTCTATTCATGGCGTACGCCCAGGGACCTATAATCTTTATGCATGGGTTCCTGGTTTTATTGGTGATTACCGAGATGTTTCTGAAATTGTTGTAACTCCAGATGGTGATGTTGATGTGGGTACACTTGTATATGAGCCTCCGCGAAGTGGCCCAACTCTGTGGGAAATAGGCCTCCCCGATCGAACTGCAGCCGAATTTTACGTCCCGGATCCTAATCCAAAGTACATTAACAAACTCTACGTCAACACTGACAGGTTTAGACAATATGGATTGTGGGAAAGATATGCAGAGTTATATCCTGACAATGACTTGGTTTACACAATTGGAGTCAGCGATTATAGAAATGATTTCTTCTTTGCTCAGGTTACCAGGAAGACAGGTAATAACACATACAAAGGATCAACATGGCAGATTAGGTTTAACCTAGACAATGTGGACAAGAACACTACCTACAAACTACGAGTATCACTTGCAACAGCACATGTTTCTGAATTACAAGTTCGGATCAATGACCCCGATACAGAGAATCCTCCTCTATTTACTACCGGACAGATTGGGAACGACAACACGATCGCGAGGCATGGAATTCATGGACTGTACAGACTATTCAATGTGGTCATTCCAAGCGCTCAGCTAGTCGAAGGGAACAATACCATATTTCTAACTCGAGGACTGAGTGTCAGCCCATTTCAGGGAATTATGTGGGGAATTCCCAATCGGGCCAACATATCTAATCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

694

Amino Acids

78.94

Weight (kDa)

5.55

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	53 - 257	1e-93	Rhamnogalacturonate lyase family
fn3_3	PF14686	413 - 482	7.4e-25	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	499 - 682	2e-46	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	1200, 1483, 1916
AciI	CCGC	3 cut(s)	1182, 1198, 1481
AclWI	GGATC	8 cut(s)	435, 455, 468, 1285, 1544, 1557, 1747, 1853
AcoI	YGGCCR	1 cut(s)	1121
AcsI	RAATTY	5 cut(s)	357, 400, 1535, 1926, 2049
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	8 cut(s)	91, 329, 952, 1230, 1356, 1462, 1565, 1940
AfeI	AGCGCT	1 cut(s)	1969
AfiI	CCNNNNNNNGG	9 cut(s)	86, 324, 456, 597, 684, 1238, 1487, 2032, 2033
AflIII	ACRYGT	2 cut(s)	916, 1822
AhdI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2018
AjnI	CCWGG	7 cut(s)	596, 708, 1231, 1264, 1360, 1390, 1709
AluBI	AGCT	6 cut(s)	439, 613, 1058, 1139, 1262, 1975
AluI	AGCT	6 cut(s)	439, 613, 1058, 1139, 1262, 1975
Alw21I	GWGCWC	1 cut(s)	819
Alw44I	GTGCAC	1 cut(s)	815
AlwI	GGATC	8 cut(s)	435, 455, 468, 1285, 1544, 1557, 1747, 1853
Ama87I	CYCGRG	1 cut(s)	2007
Aor51HI	AGCGCT	1 cut(s)	1969
AoxI	GGCC	7 cut(s)	175, 572, 1018, 1121, 1489, 1510, 2061
ApaLI	GTGCAC	1 cut(s)	815
ApeKI	GCWGC	2 cut(s)	1259, 1529
ApoI	RAATTY	5 cut(s)	357, 400, 1535, 1926, 2049
ArsI	GACNNNNNNTTYG	6 cut(s)	491, 523, 1527, 1559, 1566, 1598
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	377, 1970
AsuC2I	CCSGG	3 cut(s)	354, 719, 1547
AsuHPI	GGTGA	3 cut(s)	439, 1415, 1457
AvaI	CYCGRG	1 cut(s)	2007
AvaII	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
BaeGI	GKGCMC	1 cut(s)	819
BaeI	ACNNNNGTAYC	2 cut(s)	1452, 1485
BalI	TGGCCA	1 cut(s)	1123
BamHI	GGATCC	2 cut(s)	460, 1549
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1721
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	1271, 1541
BccI	CCATC	5 cut(s)	382, 816, 947, 1046, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	1508, 1542
BciT130I	CCWGG	7 cut(s)	598, 710, 1233, 1266, 1362, 1392, 1711
BcnI	CCSGG	3 cut(s)	354, 719, 1547
BfaI	CTAG	2 cut(s)	1766, 1976
BfmI	CTRYAG	1 cut(s)	1527
BfoI	RGCGCY	1 cut(s)	1971
BisI	GCNGC	3 cut(s)	1183, 1260, 1530
BlpI	GCTNAGC	2 cut(s)	1089, 1971
BlsI	GCNGC	3 cut(s)	1184, 1261, 1531
Bme18I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
BmeRI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2018
BmeT110I	CYCGRG	1 cut(s)	2007
BmiI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 1551
BmrI	ACTGGG	3 cut(s)	340, 861, 1016
BmsI	GCATC	2 cut(s)	291, 1075
BmuI	ACTGGG	3 cut(s)	340, 861, 1016
BpiI	GAAGAC	1 cut(s)	1721
BpmI	CTGGAG	4 cut(s)	97, 906, 1248, 1422
Bpu10I	CCTNAGC	2 cut(s)	1161, 1701
Bpu1102I	GCTNAGC	2 cut(s)	1089, 1971
BpuMI	CCSGG	3 cut(s)	354, 719, 1547
BsaBI	GATNNNNATC	2 cut(s)	780, 1554
BsaJI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BsaWI	WCCGGW	3 cut(s)	263, 742, 1886
Bsc4I	CCNNNNNNNGG	9 cut(s)	86, 324, 456, 597, 684, 1238, 1487, 2032, 2033
Bse1I	ACTGG	4 cut(s)	335, 867, 1022, 1069
Bse8I	GATNNNNATC	2 cut(s)	780, 1554
BseBI	CCWGG	7 cut(s)	598, 710, 1233, 1266, 1362, 1392, 1711
BseDI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BseGI	GGATG	7 cut(s)	136, 144, 393, 778, 827, 1090, 1222
BseJI	GATNNNNATC	2 cut(s)	780, 1554
BseLI	CCNNNNNNNGG	9 cut(s)	86, 324, 456, 597, 684, 1238, 1487, 2032, 2033
BseMII	CTCAG	6 cut(s)	414, 628, 975, 1715, 1985, 2006
BseNI	ACTGG	4 cut(s)	335, 867, 1022, 1069
BseRI	GAGGAG	2 cut(s)	95, 1863
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	2 cut(s)	1271, 1541
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	3 cut(s)	1200, 1483, 1916
Bsh1285I	CGRYCG	3 cut(s)	747, 1522, 1914
BshFI	GGCC	7 cut(s)	177, 574, 1020, 1123, 1491, 1512, 2063
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	3 cut(s)	747, 1522, 1914
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	2007
BsiSI	CCGG	6 cut(s)	264, 353, 719, 743, 1547, 1887
BsiWI	CGTACG	1 cut(s)	1354
BslFI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
BslI	CCNNNNNNNGG	9 cut(s)	86, 324, 456, 597, 684, 1238, 1487, 2032, 2033
BsmFI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
BsmI	GAATGC	2 cut(s)	222, 1298
BsnI	GGCC	7 cut(s)	177, 574, 1020, 1123, 1491, 1512, 2063
BsoBI	CYCGRG	1 cut(s)	2007
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp1407I	TGTACA	1 cut(s)	1938
Bsp143I	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
Bsp1720I	GCTNAGC	2 cut(s)	1089, 1971
Bsp19I	CCATGG	1 cut(s)	1001
Bsp68I	TCGCGA	1 cut(s)	1916
BspACI	CCGC	3 cut(s)	1182, 1198, 1481
BspANI	GGCC	7 cut(s)	177, 574, 1020, 1123, 1491, 1512, 2063
BspCNI	CTCAG	6 cut(s)	415, 627, 974, 1714, 1984, 2007
BspFNI	CGCG	3 cut(s)	1200, 1483, 1916
BspLI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 1551
BspMAI	CTGCAG	1 cut(s)	1531
BspPI	GGATC	8 cut(s)	435, 455, 468, 1285, 1544, 1557, 1747, 1853
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	1938
BsrI	ACTGG	4 cut(s)	335, 867, 1022, 1069
BssECI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BssMI	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
BssT1I	CCWWGG	1 cut(s)	1001
Bst2UI	CCWGG	7 cut(s)	598, 710, 1233, 1266, 1362, 1392, 1711
Bst4CI	ACNGT	4 cut(s)	409, 604, 1177, 1938
Bst6I	CTCTTC	3 cut(s)	113, 532, 867
BstAUI	TGTACA	1 cut(s)	1938
BstC8I	GCNNGC	4 cut(s)	179, 576, 656, 705
BstDEI	CTNAG	8 cut(s)	423, 614, 961, 1089, 1161, 1701, 1971, 2015
BstDSI	CCRYGG	1 cut(s)	1001
BstEII	GGTNACC	3 cut(s)	259, 1301, 1705
BstF5I	GGATG	7 cut(s)	136, 144, 393, 778, 827, 1090, 1222
BstFNI	CGCG	3 cut(s)	1200, 1483, 1916
BstH2I	RGCGCY	1 cut(s)	1971
BstHHI	GCGC	2 cut(s)	377, 1970
BstKTI	GATC	9 cut(s)	430, 463, 685, 1280, 1522, 1552, 1742, 1848, 1914
BstMBI	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
BstMCI	CGRYCG	3 cut(s)	747, 1522, 1914
BstNI	CCWGG	7 cut(s)	598, 710, 1233, 1266, 1362, 1392, 1711
BstNSI	RCATGY	3 cut(s)	670, 920, 1826
BstPI	GGTNACC	3 cut(s)	259, 1301, 1705
BstSFI	CTRYAG	1 cut(s)	1527
BstSLI	GKGCMC	1 cut(s)	819
BstUI	CGCG	3 cut(s)	1200, 1483, 1916
BstV1I	GCAGC	2 cut(s)	1271, 1541
BstV2I	GAAGAC	1 cut(s)	1721
BstX2I	RGATCY	2 cut(s)	460, 1549
BstXI	CCANNNNNNTGG	1 cut(s)	1500
BstYI	RGATCY	2 cut(s)	460, 1549
BsuRI	GGCC	7 cut(s)	177, 574, 1020, 1123, 1491, 1512, 2063
BtgI	CCRYGG	1 cut(s)	1001
BtsCI	GGATG	7 cut(s)	136, 144, 393, 778, 827, 1090, 1222
BtsI	GCAGTG	2 cut(s)	153, 908
BtsIMutI	CAGTG	5 cut(s)	153, 874, 908, 1076, 1587
BtuMI	TCGCGA	1 cut(s)	1916
Cac8I	GCNNGC	4 cut(s)	179, 576, 656, 705
CfoI	GCGC	2 cut(s)	377, 1970
Csp6I	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1461, 1564, 1939
CviQI	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1461, 1564, 1939
DdeI	CTNAG	8 cut(s)	423, 614, 961, 1089, 1161, 1701, 1971, 2015
DpnI	GATC	9 cut(s)	429, 462, 684, 1279, 1521, 1551, 1741, 1847, 1913
DpnII	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
DraI	TTTAAA	2 cut(s)	492, 880
DriI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2018
EaeI	YGGCCR	1 cut(s)	1121
Eam1104I	CTCTTC	3 cut(s)	113, 532, 867
Eam1105I	GACNNNNNGTC	3 cut(s)	1153, 1193, 2018
EarI	CTCTTC	3 cut(s)	113, 532, 867
Eco130I	CCWWGG	1 cut(s)	1001
Eco147I	AGGCCT	2 cut(s)	177, 1512
Eco47I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
Eco47III	AGCGCT	1 cut(s)	1969
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	2007
Eco91I	GGTNACC	3 cut(s)	259, 1301, 1705
EcoO109I	RGGNCCY	3 cut(s)	890, 923, 1365
EcoO65I	GGTNACC	3 cut(s)	259, 1301, 1705
EcoRI	GAATTC	2 cut(s)	1926, 2049
EcoRII	CCWGG	7 cut(s)	596, 708, 1231, 1264, 1360, 1390, 1709
EcoT14I	CCWWGG	1 cut(s)	1001
EcoT22I	ATGCAT	1 cut(s)	1384
ErhI	CCWWGG	1 cut(s)	1001
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	1183, 1260, 1530
FokI	GGATG	7 cut(s)	131, 143, 400, 785, 834, 1097, 1229
Fsp4HI	GCNGC	3 cut(s)	1183, 1260, 1530
FspBI	CTAG	2 cut(s)	1766, 1976
GlaI	GCGC	2 cut(s)	376, 1969
GluI	GCNGC	3 cut(s)	1183, 1260, 1530
GsuI	CTGGAG	4 cut(s)	97, 906, 1248, 1422
HaeII	RGCGCY	1 cut(s)	1971
HaeIII	GGCC	7 cut(s)	177, 574, 1020, 1123, 1491, 1512, 2063
HapII	CCGG	6 cut(s)	264, 353, 719, 743, 1547, 1887
HhaI	GCGC	2 cut(s)	377, 1970
Hin6I	GCGC	2 cut(s)	375, 1968
HinP1I	GCGC	2 cut(s)	375, 1968
HincII	GTYRAC	2 cut(s)	6, 1585
HindII	GTYRAC	2 cut(s)	6, 1585
HinfI	GANTC	4 cut(s)	97, 836, 1668, 1867
HpaII	CCGG	6 cut(s)	264, 353, 719, 743, 1547, 1887
HphI	GGTGA	3 cut(s)	439, 1415, 1457
Hpy166II	GTNNAC	6 cut(s)	6, 817, 1463, 1585, 1657, 1777
Hpy188I	TCNGA	8 cut(s)	163, 432, 617, 649, 691, 1423, 1831, 1845
Hpy8I	GTNNAC	6 cut(s)	6, 817, 1463, 1585, 1657, 1777
HpyAV	CCTTC	5 cut(s)	386, 559, 683, 904, 1976
HpyCH4III	ACNGT	4 cut(s)	409, 604, 1177, 1938
HpyCH4IV	ACGT	3 cut(s)	1227, 1542, 1581
HpyCH4V	TGCA	9 cut(s)	181, 187, 350, 817, 1296, 1382, 1529, 1628, 1814
HpyF3I	CTNAG	8 cut(s)	423, 614, 961, 1089, 1161, 1701, 1971, 2015
HpySE526I	ACGT	3 cut(s)	1227, 1542, 1581
HspAI	GCGC	2 cut(s)	375, 1968
KflI	GGGWCCC	1 cut(s)	923
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
LmnI	GCTCC	2 cut(s)	1055, 1267
Lsp1109I	GCAGC	2 cut(s)	1271, 1541
LweI	GCATC	2 cut(s)	291, 1075
MaeI	CTAG	2 cut(s)	1766, 1976
MaeII	ACGT	3 cut(s)	1227, 1542, 1581
MaeIII	GTNAC	6 cut(s)	259, 521, 1210, 1301, 1432, 1705
MalI	GATC	9 cut(s)	429, 462, 684, 1279, 1521, 1551, 1741, 1847, 1913
MboI	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
MboII	GAAGA	9 cut(s)	92, 100, 184, 320, 519, 884, 1018, 1684, 1726
MfeI	CAATTG	1 cut(s)	1662
MflI	RGATCY	2 cut(s)	460, 1549
MhlI	GDGCHC	1 cut(s)	819
MlsI	TGGCCA	1 cut(s)	1123
MluNI	TGGCCA	1 cut(s)	1123
MlyI	GAGTC	2 cut(s)	830, 1677
MmeI	TCCRAC	2 cut(s)	826, 1255
Mox20I	TGGCCA	1 cut(s)	1123
Mph1103I	ATGCAT	1 cut(s)	1384
MscI	TGGCCA	1 cut(s)	1123
MseI	TTAA	6 cut(s)	491, 609, 879, 1038, 1569, 1761
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	1123
MspI	CCGG	6 cut(s)	264, 353, 719, 743, 1547, 1887
MunI	CAATTG	1 cut(s)	1662
Mva1269I	GAATGC	2 cut(s)	222, 1298
MvaI	CCWGG	7 cut(s)	598, 710, 1233, 1266, 1362, 1392, 1711
MvnI	CGCG	3 cut(s)	1200, 1483, 1916
NciI	CCSGG	3 cut(s)	354, 719, 1547
NcoI	CCATGG	1 cut(s)	1001
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
NlaIV	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 1551
NruI	TCGCGA	1 cut(s)	1916
NsiI	ATGCAT	1 cut(s)	1384
NspI	RCATGY	3 cut(s)	670, 920, 1826
PaeR7I	CTCGAG	1 cut(s)	2007
PasI	CCCWGGG	1 cut(s)	1361
PceI	AGGCCT	2 cut(s)	177, 1512
PciI	ACATGT	2 cut(s)	916, 1822
PctI	GAATGC	2 cut(s)	222, 1298
PfeI	GAWTC	2 cut(s)	97, 1867
Pfl23II	CGTACG	1 cut(s)	1354
PflMI	CCANNNNNTGG	1 cut(s)	456
PfoI	TCCNGGA	2 cut(s)	1264, 1545
PkrI	GCNGC	3 cut(s)	1184, 1261, 1531
Ple19I	CGATCG	2 cut(s)	1522, 1914
PleI	GAGTC	2 cut(s)	830, 1676
PpsI	GAGTC	2 cut(s)	830, 1676
PpuMI	RGGWCCY	3 cut(s)	890, 923, 1365
PscI	ACATGT	2 cut(s)	916, 1822
Psp5II	RGGWCCY	3 cut(s)	890, 923, 1365
Psp6I	CCWGG	7 cut(s)	596, 708, 1231, 1264, 1360, 1390, 1709
PspEI	GGTNACC	3 cut(s)	259, 1301, 1705
PspGI	CCWGG	7 cut(s)	596, 708, 1231, 1264, 1360, 1390, 1709
PspLI	CGTACG	1 cut(s)	1354
PspN4I	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 1551
PspPPI	RGGWCCY	3 cut(s)	890, 923, 1365
PspXI	VCTCGAGB	1 cut(s)	2007
PsrI	GAACNNNNNNTAC	6 cut(s)	388, 420, 963, 995, 1775, 1807
PstI	CTGCAG	1 cut(s)	1531
PsuI	RGATCY	2 cut(s)	460, 1549
PvuI	CGATCG	2 cut(s)	1522, 1914
RruI	TCGCGA	1 cut(s)	1916
RsaI	GTAC	8 cut(s)	91, 329, 952, 1230, 1356, 1462, 1565, 1940
RsaNI	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1461, 1564, 1939
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	6 cut(s)	491, 609, 879, 1038, 1569, 1761
SatI	GCNGC	3 cut(s)	1183, 1260, 1530
Sau3AI	GATC	9 cut(s)	427, 460, 682, 1277, 1519, 1549, 1739, 1845, 1911
SchI	GAGTC	2 cut(s)	830, 1677
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	2 cut(s)	291, 1075
SfcI	CTRYAG	1 cut(s)	1527
Sfr274I	CTCGAG	1 cut(s)	2007
SinI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
SlaI	CTCGAG	1 cut(s)	2007
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	2007
SmoI	CTYRAG	1 cut(s)	2007
SseBI	AGGCCT	2 cut(s)	177, 1512
SsiI	CCGC	3 cut(s)	1182, 1198, 1481
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	2 cut(s)	1766, 1976
StuI	AGGCCT	2 cut(s)	177, 1512
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	4 cut(s)	409, 604, 1177, 1938
TaiI	ACGT	3 cut(s)	1230, 1545, 1584
TaqI	TCGA	8 cut(s)	5, 285, 362, 747, 791, 1522, 1980, 2008
TaqII	GACCGA	1 cut(s)	675
TatI	WGTACW	2 cut(s)	1563, 1938
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	2 cut(s)	97, 1867
Tru1I	TTAA	6 cut(s)	491, 609, 879, 1038, 1569, 1761
Tru9I	TTAA	6 cut(s)	491, 609, 879, 1038, 1569, 1761
TscAI	CASTG	5 cut(s)	160, 874, 908, 1076, 1594
TseI	GCWGC	2 cut(s)	1259, 1529
TspGWI	ACGGA	2 cut(s)	834, 1229
TspRI	CASTG	5 cut(s)	160, 874, 908, 1076, 1594
Van91I	CCANNNNNTGG	1 cut(s)	456
VneI	GTGCAC	1 cut(s)	815
VpaK11BI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
XapI	RAATTY	5 cut(s)	357, 400, 1535, 1926, 2049
XceI	RCATGY	3 cut(s)	670, 920, 1826
XhoI	CTCGAG	1 cut(s)	2007
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	1766, 1976
Zsp2I	ATGCAT	1 cut(s)	1384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.