Rhamnogalacturonate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g34130 |
| malus_domestica | MD15G1389100.v1.1 |
| prunus_persica | Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 |
| pyrus_communis | pycom15g34880 pycom15g34890 |
| rosa_chinensis | RchiOBHm_Chr7g0233701 |
| rosa_laevigata | RLG00000001241 |
| rosa_multiflora | Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00227080 |
| rosa_rugosa | Rorug07G0282100 Rorug07G0282200 Rorug07G0282200 |
| rosa_samantha | Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500 |
| rosa_wichuraiana | Rw7G036160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 234 |
| AccB1I | GGYRCC | 1 cut(s) | 234 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AfaI | GTAC | 1 cut(s) | 236 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 231 |
| AgsI | TTSAA | 4 cut(s) | 103, 150, 206, 215 |
| AluBI | AGCT | 1 cut(s) | 59 |
| AluI | AGCT | 1 cut(s) | 59 |
| AoxI | GGCC | 2 cut(s) | 82, 239 |
| Asp718I | GGTACC | 1 cut(s) | 234 |
| BanI | GGYRCC | 1 cut(s) | 234 |
| BccI | CCATC | 1 cut(s) | 157 |
| BmiI | GGNNCC | 1 cut(s) | 236 |
| BmsI | GCATC | 1 cut(s) | 198 |
| BpmI | CTGGAG | 1 cut(s) | 4 |
| BsaWI | WCCGGW | 1 cut(s) | 170 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 231 |
| Bse118I | RCCGGY | 1 cut(s) | 237 |
| BseGI | GGATG | 3 cut(s) | 43, 51, 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 231 |
| BshFI | GGCC | 2 cut(s) | 84, 241 |
| BshNI | GGYRCC | 1 cut(s) | 234 |
| BsiSI | CCGG | 2 cut(s) | 171, 238 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 231 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| BsnI | GGCC | 2 cut(s) | 84, 241 |
| BspANI | GGCC | 2 cut(s) | 84, 241 |
| BspHI | TCATGA | 1 cut(s) | 266 |
| BspLI | GGNNCC | 1 cut(s) | 236 |
| BspT107I | GGYRCC | 1 cut(s) | 234 |
| BsrFI | RCCGGY | 1 cut(s) | 237 |
| BssAI | RCCGGY | 1 cut(s) | 237 |
| Bst6I | CTCTTC | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 2 cut(s) | 86, 250 |
| BstEII | GGTNACC | 1 cut(s) | 166 |
| BstF5I | GGATG | 3 cut(s) | 43, 51, 168 |
| BstPI | GGTNACC | 1 cut(s) | 166 |
| BsuRI | GGCC | 2 cut(s) | 84, 241 |
| BtsCI | GGATG | 3 cut(s) | 43, 51, 168 |
| Cac8I | GCNNGC | 2 cut(s) | 86, 250 |
| CciI | TCATGA | 1 cut(s) | 266 |
| Cfr10I | RCCGGY | 1 cut(s) | 237 |
| Csp6I | GTAC | 1 cut(s) | 235 |
| CviAII | CATG | 3 cut(s) | 118, 262, 267 |
| CviJI | RGCY | 4 cut(s) | 24, 59, 84, 241 |
| CviKI_1 | RGCY | 4 cut(s) | 24, 59, 84, 241 |
| CviQI | GTAC | 1 cut(s) | 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 20 |
| EarI | CTCTTC | 1 cut(s) | 20 |
| Eco147I | AGGCCT | 1 cut(s) | 84 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| Eco91I | GGTNACC | 1 cut(s) | 166 |
| EcoO65I | GGTNACC | 1 cut(s) | 166 |
| FaeI | CATG | 3 cut(s) | 121, 265, 270 |
| FaiI | YATR | 8 cut(s) | 45, 47, 96, 111, 119, 183, 263, 268 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 129, 161 |
| FatI | CATG | 3 cut(s) | 117, 261, 266 |
| FokI | GGATG | 3 cut(s) | 38, 50, 175 |
| GsuI | CTGGAG | 1 cut(s) | 4 |
| HaeIII | GGCC | 2 cut(s) | 84, 241 |
| HapII | CCGG | 2 cut(s) | 171, 238 |
| Hin1II | CATG | 3 cut(s) | 121, 265, 270 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 2 cut(s) | 171, 238 |
| Hpy188I | TCNGA | 1 cut(s) | 70 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 212, 267 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 94 |
| Hsp92II | CATG | 3 cut(s) | 121, 265, 270 |
| KpnI | GGTACC | 1 cut(s) | 238 |
| LpnPI | CCDG | 8 cut(s) | 20, 34, 38, 66, 98, 168, 184, 251 |
| LweI | GCATC | 1 cut(s) | 198 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MboII | GAAGA | 3 cut(s) | 7, 91, 227 |
| MnlI | CCTC | 4 cut(s) | 23, 151, 224, 252 |
| MspI | CCGG | 2 cut(s) | 171, 238 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| NlaIII | CATG | 3 cut(s) | 121, 265, 270 |
| NlaIV | GGNNCC | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 266 |
| PceI | AGGCCT | 1 cut(s) | 84 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PspEI | GGTNACC | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 1 cut(s) | 236 |
| RsaI | GTAC | 1 cut(s) | 236 |
| RsaNI | GTAC | 1 cut(s) | 235 |
| SetI | ASST | 1 cut(s) | 61 |
| SfaNI | GCATC | 1 cut(s) | 198 |
| SseBI | AGGCCT | 1 cut(s) | 84 |
| StuI | AGGCCT | 1 cut(s) | 84 |
| TaqI | TCGA | 1 cut(s) | 192 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 3 cut(s) | 40, 234, 250 |