Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Reverse (-)

34703249 .. 34705299

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGACCTTTCATGTCAGATTAGGCTGGGTACCAACCGGCAACGTTTTTGGGGCTTCCGAATCGACATGTCACTGTTTGGCAAAATTGTGCACCATCATTCTGTTCATCCAAGCCATGAATTTCCTGGCTGCTGCACAAAATAGTACAAGCGGCCTACAGTTGCATATCCGTGATAAAGAGGTGGTGGTGGAAAATGGAATTCTCCAGATGACGCTATCAAAACCAGGAGGGGTGGTCACCGGACTACAATATAACGGCGTCGACAATTTGCTTGAAGTTCTTAACGAGGCTCCCAATAGAGGGATTGAAGGAACCAATTTTTCAGTTATAGTGGAAACTGAGGACCAGATAGAGCTTTCATTCACCAGAATGTGGGATCCCTCTCTAGAGGGCAAGCTTGTTCCTTTAAACATAGACATAAGGTTTGTTATGCTTCGCAACTCGTCAGGCTTCTACACTTACGCTATTTATGAACACTTGAAGGAATGGCCTGCTTTCAACTTGACCAACACGAGGACAGTTGTAACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

179

Amino Acids

19.87

Weight (kDa)

5.53

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccI	GTMKAC	2 cut(s)	5, 264
AciI	CCGC	1 cut(s)	153
AclI	AACGTT	1 cut(s)	45
AclWI	GGATC	2 cut(s)	374, 387
AcsI	RAATTY	2 cut(s)	121, 201
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	33, 148
AfiI	CCNNNNNNNGG	4 cut(s)	302, 303, 375, 516
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	278, 311, 484, 502
AjnI	CCWGG	2 cut(s)	126, 226
AluBI	AGCT	2 cut(s)	358, 400
AluI	AGCT	2 cut(s)	358, 400
Alw21I	GWGCWC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	374, 387
AoxI	GGCC	2 cut(s)	154, 491
ApaLI	GTGCAC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	131, 134
ApoI	RAATTY	2 cut(s)	121, 201
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
Asp718I	GGTACC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	232, 358
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	118, 121
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	128, 228
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	132, 135, 154
BlsI	GCNGC	3 cut(s)	133, 136, 155
Bme1390I	CCNGG	2 cut(s)	128, 228
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	4 cut(s)	33, 294, 316, 381
BmrFI	CCNGG	2 cut(s)	128, 228
BpmI	CTGGAG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 303, 375, 516
Bse118I	RCCGGY	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	128, 228
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	302, 303, 375, 516
BseMII	CTCAG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	118, 121
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	156, 493
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	39, 243
BslI	CCNNNNNNNGG	4 cut(s)	302, 303, 375, 516
BsnI	GGCC	2 cut(s)	156, 493
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	156, 493
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	33, 294, 316, 381
BspPI	GGATC	2 cut(s)	374, 387
BspT107I	GGYRCC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	128, 228
Bst4CI	ACNGT	3 cut(s)	77, 162, 523
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	398, 495
BstDEI	CTNAG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstNI	CCWGG	2 cut(s)	128, 228
BstNSI	RCATGY	1 cut(s)	72
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	126, 226
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	118, 121
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	156, 493
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	398, 495
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	2 cut(s)	223, 250
Csp6I	GTAC	2 cut(s)	32, 147
CviAII	CATG	3 cut(s)	14, 69, 118
CviQI	GTAC	2 cut(s)	32, 147
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraI	TTTAAA	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	346
Eco91I	GGTNACC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	126, 226
FaeI	CATG	3 cut(s)	17, 72, 121
FatI	CATG	3 cut(s)	13, 68, 117
FblI	GTMKAC	2 cut(s)	5, 264
Fnu4HI	GCNGC	3 cut(s)	132, 135, 154
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	132, 135, 154
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	3 cut(s)	132, 135, 154
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	156, 493
HapII	CCGG	2 cut(s)	39, 243
HgaI	GACGC	2 cut(s)	223, 250
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	17, 72, 121
HincII	GTYRAC	2 cut(s)	6, 265
HindII	GTYRAC	2 cut(s)	6, 265
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	39, 243
HphI	GGTGA	2 cut(s)	232, 358
Hpy166II	GTNNAC	3 cut(s)	6, 93, 265
Hpy188I	TCNGA	2 cut(s)	20, 61
Hpy188III	TCNNGA	2 cut(s)	208, 389
Hpy8I	GTNNAC	3 cut(s)	6, 93, 265
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	305, 478
HpyCH4III	ACNGT	3 cut(s)	77, 162, 523
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	93, 137, 166
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	17, 72, 121
KpnI	GGTACC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	118, 121
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	71, 238, 526
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	5 cut(s)	86, 121, 201, 268, 319
MnlI	CCTC	8 cut(s)	175, 224, 283, 296, 337, 385, 394, 510
MseI	TTAA	2 cut(s)	285, 410
MslI	CAYNNNNRTG	2 cut(s)	171, 371
MspI	CCGG	2 cut(s)	39, 243
MspR9I	CCNGG	2 cut(s)	128, 228
MvaI	CCWGG	2 cut(s)	128, 228
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	17, 72, 121
NlaIV	GGNNCC	4 cut(s)	33, 294, 316, 381
NmuCI	GTSAC	2 cut(s)	71, 238
NspI	RCATGY	1 cut(s)	72
PciI	ACATGT	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	133, 136, 155
PscI	ACATGT	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	126, 226
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	126, 226
PspN4I	GGNNCC	4 cut(s)	33, 294, 316, 381
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	33, 148
RsaNI	GTAC	2 cut(s)	32, 147
RseI	CAYNNNNRTG	2 cut(s)	171, 371
SalI	GTCGAC	2 cut(s)	4, 263
SaqAI	TTAA	2 cut(s)	285, 410
SatI	GCNGC	3 cut(s)	132, 135, 154
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	128, 228
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	6 cut(s)	11, 48, 186, 360, 402, 428
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	171, 371
Sse9I	AATT	5 cut(s)	86, 121, 201, 268, 319
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	126, 226
TaaI	ACNGT	3 cut(s)	77, 162, 523
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	5, 65, 264
TasI	AATT	5 cut(s)	86, 121, 201, 268, 319
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	285, 410
Tru9I	TTAA	2 cut(s)	285, 410
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	2 cut(s)	71, 238
TseI	GCWGC	2 cut(s)	131, 134
Tsp45I	GTSAC	2 cut(s)	71, 238
TspDTI	ATGAA	4 cut(s)	97, 134, 351, 489
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	375
VneI	GTGCAC	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	121, 201
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	5, 264
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.