Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Forward (+)

54504923 .. 54510146

Gene Structure 5224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGTCGACCTTTCCTGTTGGATTAGGTAAAGGACCAATCAGCACCATTTTTTCGCTTTCCACAATAACATGGATTTCGCCAAAGTTGGGTACCATGATTCTTCTCCTCTTCTCCAGCCAGACATTTCTGGATGAGCATATATTCATCCAAGCCACTGCTTCAGAAAATACAACAGGCCTGCAACTGCATATCTTCAATCAATATGAATCAGTTTCTGACCGATTTTACTTTATATGCGCAGGTGGTCATGGAAATGGCATTCTCCAAGTCAATCTTTCAAAACCAGAGGGAATGGTTACCGGAATACAATATAAAGGCATCGACAATCTGCTTGAAGTTCTTGAAGATGAAACCAATAGAGGGTACTGGGATATGGTTTGGTCTGCACCGGGAATTTCGAGAAAGAAAGGCGCATTTGATAGGATGGAAGGAACAAATTTTACGGTTATAGTGGAAACTGAGGATCAGATAGAGCTTTCATTCACCAGAATGTGGGATCCCTCTTTAGAGGGCAAAGTTGTCCCTTTAAACATAGACAAAAGGTTCGTGTTGCTTCGTAACTCTTCGGGTTTCTACACTTACGCCATTTATGAACACTTGAAGGAGTGGCCTGCTTTCAACTTGACCAACACCAGGACTGTGTTTAAGCTCAGAAAAGACAAGTTTCATTACATGGCAATATCAGACAGCAGGCAAAGACACATGCCCCTTCCCGATGATCGGTCAGAAAAAAGAGGGCAAGCCCTGGCTTACCCGGAGGCAGTCTTGCTCGTCAATCCGGTCGAGCCAGAGTTCAAAGGAGAGGTGGATGATAAATATCAATATTCGATTGAGAACATACATAATCGGGTGCACGGATGGATAGCAAATGACTCACAGGTTGGATTTTGGCAGATTACTCCCAGTGAAGAGTTTAAATCTGGAGGTCCCTTCAAGCAGTGCCTTACTTCACATGTGGGACCCATTACCCTTGCCATCTTTCATAGTACCCATTACTCAGGAGAGGAACTGATAATACAATTTGGGTCCAATGAGCCATGGAAGAAAGTGTTTGGCCCAGTTTTTTTCTATCTTAATTCTTTGGTTGATGGAGCTAACCCTTTCCAGTGTCTATGGGAGGATGCTAAGCAACAGATGAACGATGAAGTTGAAAGGTGGCCATATGATTTTCCAGCTTCAAAGGACTTTCTGTCGCCTAAGCAACGAGGAACAGTTAGCGGCAGACTATTGGTCCGCGAAAGGTATGTTACGGATGATAAAGACGTACCTGGAAATGGAACTTTGGTAGGATTGGCAGCTCCAGGAGTTGTTGGATCATGGCAGTTAGAATGCAAGGGTTACCAATTCTGGACCAAAGCAGACAATAATGGCTACTTCTCTATTCATGGCGTACGCCCAGGGACCTATAATCTTTATGCATGGGTTCCTGGTTTTATTGGTGATTACCGAGATGTTTCTGAAATTGTTGTAACTCCAGATGGTGATGTTGATGTGGGTACACTTGTATATGAGCCTCCGCGAAGTGGCCCAACGCTGTGGGAAATAGGCCTCCCCGATCGAACTGCAGCAGAATTTTACGTCCCGGATCCTAATCCAAAGTACATTAACAAACTCTACGTCAACACTGACAGGTTTAGACAATATGGATTGTGGGAAAGATATGCAGAGTTATATCCTGACAATGACTTGGTTTACACAATTGGAGTTAGCGATTATAGAAATGATTTCTTCTTTGCTCAGGTTACCAGGAAGACAGGTAATAACACATACAAAGGATCAACATGGCAGATTAGGTTTAACCTAGACAATGTGGACAAGAACACTACCTACAAACTACGAGTATCACTTGCAACAGCACATGTTTCTGAATTACAAGTTCGGATCAATGACCCCGATACAGAGAATCCTCCTCTATTTACTACCGGACAGATTGGGAACGACAACACGATCGCGAGGCATGGAATTCATGGACTGTACAGACTATTCAATGTGGTCATTCCAAGCGCTCATCTAGTCGAAGGGAACAATACCATATTTCTAACTCGAGGACTGAGTGTCAGCCCATTTCAGGGAATTATGTATGATTATATTCGTTTAGAAGGCCCCCAATCTTCTAATGACAACAATAACATTGGATTTAGAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

716

Amino Acids

81.49

Weight (kDa)

5.55

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	84 - 269	3.6e-89	Rhamnogalacturonate lyase family
fn3_3	PF14686	425 - 494	7.8e-25	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	511 - 699	6.1e-50	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	230
Acc16I	TGCGCA	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	230
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	1236, 1519, 1952
AciI	CCGC	3 cut(s)	1218, 1234, 1517
AclWI	GGATC	8 cut(s)	471, 491, 504, 1321, 1580, 1593, 1783, 1889
AcoI	YGGCCR	1 cut(s)	1157
AcsI	RAATTY	4 cut(s)	393, 436, 1571, 1962
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	8 cut(s)	91, 365, 988, 1266, 1392, 1498, 1601, 1976
AfeI	AGCGCT	1 cut(s)	2005
AfiI	CCNNNNNNNGG	9 cut(s)	86, 360, 492, 633, 720, 1274, 1523, 2068, 2069
AflIII	ACRYGT	2 cut(s)	952, 1858
AhdI	GACNNNNNGTC	3 cut(s)	1189, 1229, 2054
AjnI	CCWGG	7 cut(s)	632, 744, 1267, 1300, 1396, 1426, 1745
AluBI	AGCT	5 cut(s)	475, 649, 1094, 1175, 1298
AluI	AGCT	5 cut(s)	475, 649, 1094, 1175, 1298
Alw21I	GWGCWC	1 cut(s)	855
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	8 cut(s)	471, 491, 504, 1321, 1580, 1593, 1783, 1889
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	2043
Aor51HI	AGCGCT	1 cut(s)	2005
AoxI	GGCC	7 cut(s)	175, 608, 1054, 1157, 1525, 1546, 2101
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	1295, 1565
ApoI	RAATTY	4 cut(s)	393, 436, 1571, 1962
ArsI	GACNNNNNNTTYG	4 cut(s)	527, 559, 1602, 1634
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	239, 413, 2006
AsuC2I	CCSGG	3 cut(s)	390, 755, 1583
AsuHPI	GGTGA	3 cut(s)	475, 1451, 1493
AvaI	CYCGRG	1 cut(s)	2043
AvaII	GGWCC	7 cut(s)	32, 926, 959, 1026, 1231, 1350, 1401
BaeGI	GKGCMC	1 cut(s)	855
BaeI	ACNNNNGTAYC	2 cut(s)	1488, 1521
BalI	TGGCCA	1 cut(s)	1159
BamHI	GGATCC	2 cut(s)	496, 1585
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1757
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	1307, 1577
BccI	CCATC	5 cut(s)	418, 852, 983, 1082, 1472
BcgI	CGANNNNNNTGC	2 cut(s)	1544, 1578
BciT130I	CCWGG	7 cut(s)	634, 746, 1269, 1302, 1398, 1428, 1747
BcnI	CCSGG	3 cut(s)	390, 755, 1583
BfaI	CTAG	2 cut(s)	1802, 2012
BfmI	CTRYAG	1 cut(s)	1563
BfoI	RGCGCY	1 cut(s)	2007
BfuAI	ACCTGC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	1219, 1296, 1566
BlpI	GCTNAGC	1 cut(s)	1125
BlsI	GCNGC	3 cut(s)	1220, 1297, 1567
Bme18I	GGWCC	7 cut(s)	32, 926, 959, 1026, 1231, 1350, 1401
BmeRI	GACNNNNNGTC	3 cut(s)	1189, 1229, 2054
BmeT110I	CYCGRG	1 cut(s)	2043
BmrI	ACTGGG	3 cut(s)	376, 897, 1052
BmsI	GCATC	2 cut(s)	327, 1111
BmuI	ACTGGG	3 cut(s)	376, 897, 1052
BpiI	GAAGAC	1 cut(s)	1757
BpmI	CTGGAG	4 cut(s)	97, 942, 1284, 1458
Bpu10I	CCTNAGC	2 cut(s)	1197, 1737
Bpu1102I	GCTNAGC	1 cut(s)	1125
BpuMI	CCSGG	3 cut(s)	390, 755, 1583
BsaBI	GATNNNNATC	2 cut(s)	816, 1590
BsaJI	CCNNGG	4 cut(s)	744, 1037, 1396, 1397
BsaWI	WCCGGW	3 cut(s)	299, 778, 1922
Bsc4I	CCNNNNNNNGG	9 cut(s)	86, 360, 492, 633, 720, 1274, 1523, 2068, 2069
Bse1I	ACTGG	4 cut(s)	371, 903, 1058, 1105
Bse8I	GATNNNNATC	2 cut(s)	816, 1590
BseBI	CCWGG	7 cut(s)	634, 746, 1269, 1302, 1398, 1428, 1747
BseDI	CCNNGG	4 cut(s)	744, 1037, 1396, 1397
BseGI	GGATG	7 cut(s)	136, 144, 429, 814, 863, 1126, 1258
BseJI	GATNNNNATC	2 cut(s)	816, 1590
BseLI	CCNNNNNNNGG	9 cut(s)	86, 360, 492, 633, 720, 1274, 1523, 2068, 2069
BseMII	CTCAG	5 cut(s)	450, 664, 1011, 1751, 2042
BseNI	ACTGG	4 cut(s)	371, 903, 1058, 1105
BseRI	GAGGAG	2 cut(s)	95, 1899
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	2 cut(s)	1307, 1577
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	3 cut(s)	1236, 1519, 1952
Bsh1285I	CGRYCG	3 cut(s)	783, 1558, 1950
BshFI	GGCC	7 cut(s)	177, 610, 1056, 1159, 1527, 1548, 2103
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	3 cut(s)	783, 1558, 1950
BsiHKAI	GWGCWC	1 cut(s)	855
BsiHKCI	CYCGRG	1 cut(s)	2043
BsiSI	CCGG	6 cut(s)	300, 389, 755, 779, 1583, 1923
BsiWI	CGTACG	1 cut(s)	1390
BslFI	GGGAC	5 cut(s)	506, 912, 972, 1414, 1565
BslI	CCNNNNNNNGG	9 cut(s)	86, 360, 492, 633, 720, 1274, 1523, 2068, 2069
BsmFI	GGGAC	5 cut(s)	506, 912, 972, 1414, 1565
BsmI	GAATGC	2 cut(s)	258, 1334
BsnI	GGCC	7 cut(s)	177, 610, 1056, 1159, 1527, 1548, 2103
BsoBI	CYCGRG	1 cut(s)	2043
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp1407I	TGTACA	1 cut(s)	1974
Bsp143I	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
Bsp1720I	GCTNAGC	1 cut(s)	1125
Bsp19I	CCATGG	1 cut(s)	1037
Bsp68I	TCGCGA	1 cut(s)	1952
BspACI	CCGC	3 cut(s)	1218, 1234, 1517
BspANI	GGCC	7 cut(s)	177, 610, 1056, 1159, 1527, 1548, 2103
BspCNI	CTCAG	5 cut(s)	451, 663, 1010, 1750, 2043
BspFNI	CGCG	3 cut(s)	1236, 1519, 1952
BspMAI	CTGCAG	1 cut(s)	1567
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	8 cut(s)	471, 491, 504, 1321, 1580, 1593, 1783, 1889
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	1974
BsrI	ACTGG	4 cut(s)	371, 903, 1058, 1105
BssECI	CCNNGG	4 cut(s)	744, 1037, 1396, 1397
BssMI	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
BssT1I	CCWWGG	1 cut(s)	1037
Bst2UI	CCWGG	7 cut(s)	634, 746, 1269, 1302, 1398, 1428, 1747
Bst4CI	ACNGT	4 cut(s)	445, 640, 1213, 1974
Bst6I	CTCTTC	3 cut(s)	113, 568, 903
BstAUI	TGTACA	1 cut(s)	1974
BstC8I	GCNNGC	4 cut(s)	179, 612, 692, 741
BstDEI	CTNAG	7 cut(s)	459, 650, 997, 1125, 1197, 1737, 2051
BstDSI	CCRYGG	1 cut(s)	1037
BstEII	GGTNACC	3 cut(s)	295, 1337, 1741
BstF5I	GGATG	7 cut(s)	136, 144, 429, 814, 863, 1126, 1258
BstFNI	CGCG	3 cut(s)	1236, 1519, 1952
BstH2I	RGCGCY	1 cut(s)	2007
BstHHI	GCGC	3 cut(s)	239, 413, 2006
BstKTI	GATC	9 cut(s)	466, 499, 721, 1316, 1558, 1588, 1778, 1884, 1950
BstMBI	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
BstMCI	CGRYCG	3 cut(s)	783, 1558, 1950
BstNI	CCWGG	7 cut(s)	634, 746, 1269, 1302, 1398, 1428, 1747
BstNSI	RCATGY	3 cut(s)	706, 956, 1862
BstPI	GGTNACC	3 cut(s)	295, 1337, 1741
BstSFI	CTRYAG	1 cut(s)	1563
BstSLI	GKGCMC	1 cut(s)	855
BstUI	CGCG	3 cut(s)	1236, 1519, 1952
BstV1I	GCAGC	2 cut(s)	1307, 1577
BstV2I	GAAGAC	1 cut(s)	1757
BstX2I	RGATCY	2 cut(s)	496, 1585
BstXI	CCANNNNNNTGG	1 cut(s)	1536
BstYI	RGATCY	2 cut(s)	496, 1585
BsuRI	GGCC	7 cut(s)	177, 610, 1056, 1159, 1527, 1548, 2103
BtgI	CCRYGG	1 cut(s)	1037
BtsCI	GGATG	7 cut(s)	136, 144, 429, 814, 863, 1126, 1258
BtsI	GCAGTG	2 cut(s)	153, 944
BtsIMutI	CAGTG	5 cut(s)	153, 910, 944, 1112, 1623
BtuMI	TCGCGA	1 cut(s)	1952
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	179, 612, 692, 741
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	3 cut(s)	239, 413, 2006
Csp6I	GTAC	8 cut(s)	90, 364, 987, 1265, 1391, 1497, 1600, 1975
CviQI	GTAC	8 cut(s)	90, 364, 987, 1265, 1391, 1497, 1600, 1975
DdeI	CTNAG	7 cut(s)	459, 650, 997, 1125, 1197, 1737, 2051
DpnI	GATC	9 cut(s)	465, 498, 720, 1315, 1557, 1587, 1777, 1883, 1949
DpnII	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
DraI	TTTAAA	2 cut(s)	528, 916
DriI	GACNNNNNGTC	3 cut(s)	1189, 1229, 2054
EaeI	YGGCCR	1 cut(s)	1157
Eam1104I	CTCTTC	3 cut(s)	113, 568, 903
Eam1105I	GACNNNNNGTC	3 cut(s)	1189, 1229, 2054
EarI	CTCTTC	3 cut(s)	113, 568, 903
Eco130I	CCWWGG	1 cut(s)	1037
Eco147I	AGGCCT	2 cut(s)	177, 1548
Eco47I	GGWCC	7 cut(s)	32, 926, 959, 1026, 1231, 1350, 1401
Eco47III	AGCGCT	1 cut(s)	2005
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	2043
Eco91I	GGTNACC	3 cut(s)	295, 1337, 1741
EcoO109I	RGGNCCY	4 cut(s)	926, 959, 1401, 2102
EcoO65I	GGTNACC	3 cut(s)	295, 1337, 1741
EcoRI	GAATTC	1 cut(s)	1962
EcoRII	CCWGG	7 cut(s)	632, 744, 1267, 1300, 1396, 1426, 1745
EcoT14I	CCWWGG	1 cut(s)	1037
EcoT22I	ATGCAT	1 cut(s)	1420
ErhI	CCWWGG	1 cut(s)	1037
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	5 cut(s)	506, 912, 972, 1414, 1565
FauNDI	CATATG	1 cut(s)	1162
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	1219, 1296, 1566
FokI	GGATG	7 cut(s)	131, 143, 436, 821, 870, 1133, 1265
Fsp4HI	GCNGC	3 cut(s)	1219, 1296, 1566
FspBI	CTAG	2 cut(s)	1802, 2012
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	3 cut(s)	238, 412, 2005
GluI	GCNGC	3 cut(s)	1219, 1296, 1566
GsuI	CTGGAG	4 cut(s)	97, 942, 1284, 1458
HaeII	RGCGCY	1 cut(s)	2007
HaeIII	GGCC	7 cut(s)	177, 610, 1056, 1159, 1527, 1548, 2103
HapII	CCGG	6 cut(s)	300, 389, 755, 779, 1583, 1923
HhaI	GCGC	3 cut(s)	239, 413, 2006
Hin6I	GCGC	3 cut(s)	237, 411, 2004
HinP1I	GCGC	3 cut(s)	237, 411, 2004
HincII	GTYRAC	2 cut(s)	6, 1621
HindII	GTYRAC	2 cut(s)	6, 1621
HinfI	GANTC	4 cut(s)	97, 206, 872, 1903
HpaII	CCGG	6 cut(s)	300, 389, 755, 779, 1583, 1923
HphI	GGTGA	3 cut(s)	475, 1451, 1493
Hpy166II	GTNNAC	6 cut(s)	6, 853, 1499, 1621, 1693, 1813
Hpy188I	TCNGA	9 cut(s)	163, 217, 468, 653, 685, 727, 1459, 1867, 1881
Hpy8I	GTNNAC	6 cut(s)	6, 853, 1499, 1621, 1693, 1813
HpyAV	CCTTC	6 cut(s)	422, 595, 719, 940, 2012, 2093
HpyCH4III	ACNGT	4 cut(s)	445, 640, 1213, 1974
HpyCH4IV	ACGT	3 cut(s)	1263, 1578, 1617
HpyCH4V	TGCA	9 cut(s)	181, 187, 386, 853, 1332, 1418, 1565, 1664, 1850
HpyF3I	CTNAG	7 cut(s)	459, 650, 997, 1125, 1197, 1737, 2051
HpySE526I	ACGT	3 cut(s)	1263, 1578, 1617
HspAI	GCGC	3 cut(s)	237, 411, 2004
KflI	GGGWCCC	1 cut(s)	959
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
LmnI	GCTCC	2 cut(s)	1091, 1303
Lsp1109I	GCAGC	2 cut(s)	1307, 1577
LweI	GCATC	2 cut(s)	327, 1111
MaeI	CTAG	2 cut(s)	1802, 2012
MaeII	ACGT	3 cut(s)	1263, 1578, 1617
MaeIII	GTNAC	6 cut(s)	295, 557, 1246, 1337, 1468, 1741
MalI	GATC	9 cut(s)	465, 498, 720, 1315, 1557, 1587, 1777, 1883, 1949
MboI	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
MfeI	CAATTG	1 cut(s)	1698
MflI	RGATCY	2 cut(s)	496, 1585
MhlI	GDGCHC	1 cut(s)	855
MlsI	TGGCCA	1 cut(s)	1159
MluNI	TGGCCA	1 cut(s)	1159
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	2 cut(s)	862, 1291
Mox20I	TGGCCA	1 cut(s)	1159
Mph1103I	ATGCAT	1 cut(s)	1420
MscI	TGGCCA	1 cut(s)	1159
MseI	TTAA	7 cut(s)	527, 645, 915, 1074, 1605, 1797, 2149
MslI	CAYNNNNRTG	2 cut(s)	252, 488
Msp20I	TGGCCA	1 cut(s)	1159
MspI	CCGG	6 cut(s)	300, 389, 755, 779, 1583, 1923
MunI	CAATTG	1 cut(s)	1698
Mva1269I	GAATGC	2 cut(s)	258, 1334
MvaI	CCWGG	7 cut(s)	634, 746, 1269, 1302, 1398, 1428, 1747
MvnI	CGCG	3 cut(s)	1236, 1519, 1952
NciI	CCSGG	3 cut(s)	390, 755, 1583
NcoI	CCATGG	1 cut(s)	1037
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
NruI	TCGCGA	1 cut(s)	1952
NsbI	TGCGCA	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	1420
NspI	RCATGY	3 cut(s)	706, 956, 1862
PaeR7I	CTCGAG	1 cut(s)	2043
PaqCI	CACCTGC	1 cut(s)	230
PasI	CCCWGGG	1 cut(s)	1397
PceI	AGGCCT	2 cut(s)	177, 1548
PciI	ACATGT	2 cut(s)	952, 1858
PctI	GAATGC	2 cut(s)	258, 1334
PfeI	GAWTC	3 cut(s)	97, 206, 1903
Pfl23II	CGTACG	1 cut(s)	1390
PflMI	CCANNNNNTGG	1 cut(s)	492
PfoI	TCCNGGA	2 cut(s)	1300, 1581
PkrI	GCNGC	3 cut(s)	1220, 1297, 1567
Ple19I	CGATCG	2 cut(s)	1558, 1950
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PpuMI	RGGWCCY	3 cut(s)	926, 959, 1401
PscI	ACATGT	2 cut(s)	952, 1858
Psp5II	RGGWCCY	3 cut(s)	926, 959, 1401
Psp6I	CCWGG	7 cut(s)	632, 744, 1267, 1300, 1396, 1426, 1745
PspEI	GGTNACC	3 cut(s)	295, 1337, 1741
PspGI	CCWGG	7 cut(s)	632, 744, 1267, 1300, 1396, 1426, 1745
PspLI	CGTACG	1 cut(s)	1390
PspPPI	RGGWCCY	3 cut(s)	926, 959, 1401
PspXI	VCTCGAGB	1 cut(s)	2043
PsrI	GAACNNNNNNTAC	6 cut(s)	424, 456, 999, 1031, 1811, 1843
PstI	CTGCAG	1 cut(s)	1567
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	496, 1585
PvuI	CGATCG	2 cut(s)	1558, 1950
RruI	TCGCGA	1 cut(s)	1952
RsaI	GTAC	8 cut(s)	91, 365, 988, 1266, 1392, 1498, 1601, 1976
RsaNI	GTAC	8 cut(s)	90, 364, 987, 1265, 1391, 1497, 1600, 1975
RseI	CAYNNNNRTG	2 cut(s)	252, 488
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	7 cut(s)	527, 645, 915, 1074, 1605, 1797, 2149
SatI	GCNGC	3 cut(s)	1219, 1296, 1566
Sau3AI	GATC	9 cut(s)	463, 496, 718, 1313, 1555, 1585, 1775, 1881, 1947
SchI	GAGTC	1 cut(s)	866
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	2 cut(s)	327, 1111
SfcI	CTRYAG	1 cut(s)	1563
Sfr274I	CTCGAG	1 cut(s)	2043
SinI	GGWCC	7 cut(s)	32, 926, 959, 1026, 1231, 1350, 1401
SlaI	CTCGAG	1 cut(s)	2043
SmiMI	CAYNNNNRTG	2 cut(s)	252, 488
SmlI	CTYRAG	1 cut(s)	2043
SmoI	CTYRAG	1 cut(s)	2043
SseBI	AGGCCT	2 cut(s)	177, 1548
SsiI	CCGC	3 cut(s)	1218, 1234, 1517
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	2 cut(s)	1802, 2012
StuI	AGGCCT	2 cut(s)	177, 1548
StyI	CCWWGG	1 cut(s)	1037
TaaI	ACNGT	4 cut(s)	445, 640, 1213, 1974
TaiI	ACGT	3 cut(s)	1266, 1581, 1620
TaqI	TCGA	8 cut(s)	5, 321, 398, 783, 827, 1558, 2016, 2044
TaqII	GACCGA	2 cut(s)	234, 711
TatI	WGTACW	2 cut(s)	1599, 1974
TauI	GCSGC	1 cut(s)	1221
TfiI	GAWTC	3 cut(s)	97, 206, 1903
Tru1I	TTAA	7 cut(s)	527, 645, 915, 1074, 1605, 1797, 2149
Tru9I	TTAA	7 cut(s)	527, 645, 915, 1074, 1605, 1797, 2149
TscAI	CASTG	5 cut(s)	160, 910, 944, 1112, 1630
TseI	GCWGC	2 cut(s)	1295, 1565
TspGWI	ACGGA	2 cut(s)	870, 1265
TspRI	CASTG	5 cut(s)	160, 910, 944, 1112, 1630
Van91I	CCANNNNNTGG	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	851
VpaK11BI	GGWCC	7 cut(s)	32, 926, 959, 1026, 1231, 1350, 1401
XapI	RAATTY	4 cut(s)	393, 436, 1571, 1962
XceI	RCATGY	3 cut(s)	706, 956, 1862
XhoI	CTCGAG	1 cut(s)	2043
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	1802, 2012
Zsp2I	ATGCAT	1 cut(s)	1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.