Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Reverse (-)

121616 .. 123798

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgccccttcccgatgatcggtcagaaaaaagagggcaagccctggcttacccggaggcagtcttgctcgtcaatccggtcgagccagagttcaaaggagaggtggatgataaatatcaatattcgattgagaacatacataatcgggtgcacggatggatagcaaatgactcacaggttggattttggcagattactcccagtgaagagtttaaatctggaggtcccttcaagcagtgccttacttcacatgtgggacccattacccttgccatgaacgatgaagttgaaaggtggccatatgattttccagcttcaaaggactttctgtcgcctaagcaacgaggaacagttagcggcagattattggtccgcgaaaggtatgttacggatgataaagacgtaccgggaaatggaactttggtaggattggcagctccaggagttgttggatcatggcagttagaatgcaagggttaccaattctggaccaaggctgacaataatggctacttctctattcatggcgtacgcccagggacctataatctctatgcatgggttcctggttttattgatggtgatgttgatgtgggtacacttgtatatgagcctccgcgaagtggcccaactctgtgggaaataggcctccccgatcgaactgcagcagaattttacgtcccagatcctaatccaaagtacattaacaaactctacgtcaacactgacaggtttgttgcacttgttggtaattatcttcttaatgattggaaaaggtatgttatgaaacttatgcatgtgcttattatgatcgacaggtttagacaatatggattgtgggaaagatatgcagagctatatcctgacaatgacttggtttacacaattggagttagcgattatagaaacgatttcttctttgctcaggttaccaggttcggttacacttcgattgttcttcttctttcgaaaaattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

326

Amino Acids

37.3

Weight (kDa)

5.25

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	375, 619
AciI	CCGC	3 cut(s)	357, 373, 617
AclWI	GGATC	2 cut(s)	460, 680
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	671, 973
AfaI	GTAC	4 cut(s)	405, 531, 598, 701
AfiI	CCNNNNNNNGG	3 cut(s)	18, 413, 623
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	94, 232, 290, 318
AhdI	GACNNNNNGTC	1 cut(s)	328
AjnI	CCWGG	5 cut(s)	42, 439, 535, 565, 932
AluBI	AGCT	3 cut(s)	314, 437, 856
AluI	AGCT	3 cut(s)	314, 437, 856
Alw21I	GWGCWC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	460, 680
AoxI	GGCC	3 cut(s)	296, 625, 646
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	434, 665
ApoI	RAATTY	2 cut(s)	671, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
AspS9I	GGNCC	6 cut(s)	224, 257, 370, 489, 540, 626
AsuC2I	CCSGG	2 cut(s)	53, 408
AsuHPI	GGTGA	1 cut(s)	593
AsuII	TTCGAA	1 cut(s)	968
AvaII	GGWCC	5 cut(s)	224, 257, 370, 489, 540
BaeGI	GKGCMC	1 cut(s)	153
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BalI	TGGCCA	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	446, 677
BccI	CCATC	2 cut(s)	150, 572
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	5 cut(s)	44, 441, 537, 567, 934
BcnI	CCSGG	2 cut(s)	53, 408
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	3 cut(s)	358, 435, 666
BlsI	GCNGC	3 cut(s)	359, 436, 667
Bme1390I	CCNGG	7 cut(s)	44, 53, 408, 441, 537, 567, 934
Bme18I	GGWCC	5 cut(s)	224, 257, 370, 489, 540
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	6 cut(s)	224, 257, 370, 489, 540, 626
BmiI	GGNNCC	5 cut(s)	226, 258, 259, 541, 564
BmrFI	CCNGG	7 cut(s)	44, 53, 408, 441, 537, 567, 934
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	240, 423
Bpu10I	CCTNAGC	2 cut(s)	336, 924
Bpu14I	TTCGAA	1 cut(s)	968
BpuMI	CCSGG	2 cut(s)	53, 408
BsaBI	GATNNNNATC	2 cut(s)	114, 690
BsaJI	CCNNGG	4 cut(s)	42, 492, 535, 536
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 413, 623
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	2 cut(s)	114, 690
BseBI	CCWGG	5 cut(s)	44, 441, 537, 567, 934
BseDI	CCNNGG	4 cut(s)	42, 492, 535, 536
BseGI	GGATG	3 cut(s)	112, 161, 397
BseJI	GATNNNNATC	2 cut(s)	114, 690
BseLI	CCNNNNNNNGG	3 cut(s)	18, 413, 623
BseMII	CTCAG	1 cut(s)	938
BseNI	ACTGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	446, 677
Bsh1236I	CGCG	2 cut(s)	375, 619
Bsh1285I	CGRYCG	2 cut(s)	81, 658
BshFI	GGCC	3 cut(s)	298, 627, 648
BsiEI	CGRYCG	2 cut(s)	81, 658
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	53, 77, 407
BsiWI	CGTACG	1 cut(s)	529
BslFI	GGGAC	4 cut(s)	210, 270, 553, 665
BslI	CCNNNNNNNGG	3 cut(s)	18, 413, 623
BsmFI	GGGAC	4 cut(s)	210, 270, 553, 665
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	298, 627, 648
Bsp119I	TTCGAA	1 cut(s)	968
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	16, 452, 655, 685, 810
BspACI	CCGC	3 cut(s)	357, 373, 617
BspANI	GGCC	3 cut(s)	298, 627, 648
BspCNI	CTCAG	1 cut(s)	937
BspFNI	CGCG	2 cut(s)	375, 619
BspHI	TCATGA	1 cut(s)	977
BspLI	GGNNCC	5 cut(s)	226, 258, 259, 541, 564
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	460, 680
BspT104I	TTCGAA	1 cut(s)	968
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	4 cut(s)	42, 492, 535, 536
BssMI	GATC	5 cut(s)	16, 452, 655, 685, 810
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	5 cut(s)	44, 441, 537, 567, 934
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	336, 924
BstEII	GGTNACC	2 cut(s)	476, 928
BstF5I	GGATG	3 cut(s)	112, 161, 397
BstFNI	CGCG	2 cut(s)	375, 619
BstKTI	GATC	5 cut(s)	19, 455, 658, 688, 813
BstMBI	GATC	5 cut(s)	16, 452, 655, 685, 810
BstMCI	CGRYCG	2 cut(s)	81, 658
BstNI	CCWGG	5 cut(s)	44, 441, 537, 567, 934
BstNSI	RCATGY	2 cut(s)	254, 800
BstPI	GGTNACC	2 cut(s)	476, 928
BstSCI	CCNGG	7 cut(s)	42, 51, 406, 439, 535, 565, 932
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	2 cut(s)	375, 619
BstV1I	GCAGC	2 cut(s)	446, 677
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	3 cut(s)	298, 627, 648
BtsCI	GGATG	3 cut(s)	112, 161, 397
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	208, 242, 723
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	977
Cfr13I	GGNCC	6 cut(s)	224, 257, 370, 489, 540, 626
CsiI	ACCWGGT	1 cut(s)	932
Csp6I	GTAC	4 cut(s)	404, 530, 597, 700
CviAII	CATG	7 cut(s)	251, 274, 456, 524, 558, 797, 978
CviQI	GTAC	4 cut(s)	404, 530, 597, 700
DdeI	CTNAG	2 cut(s)	336, 924
DpnI	GATC	5 cut(s)	18, 454, 657, 687, 812
DpnII	GATC	5 cut(s)	16, 452, 655, 685, 810
DraI	TTTAAA	1 cut(s)	214
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	648
Eco47I	GGWCC	5 cut(s)	224, 257, 370, 489, 540
Eco91I	GGTNACC	2 cut(s)	476, 928
EcoO109I	RGGNCCY	3 cut(s)	224, 257, 540
EcoO65I	GGTNACC	2 cut(s)	476, 928
EcoRII	CCWGG	5 cut(s)	42, 439, 535, 565, 932
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	2 cut(s)	559, 798
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	7 cut(s)	254, 277, 459, 527, 561, 800, 981
FaqI	GGGAC	4 cut(s)	210, 270, 553, 665
FatI	CATG	7 cut(s)	250, 273, 455, 523, 557, 796, 977
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	358, 435, 666
FokI	GGATG	3 cut(s)	119, 168, 404
Fsp4HI	GCNGC	3 cut(s)	358, 435, 666
GluI	GCNGC	3 cut(s)	358, 435, 666
GsuI	CTGGAG	2 cut(s)	240, 423
HaeIII	GGCC	3 cut(s)	298, 627, 648
HapII	CCGG	3 cut(s)	53, 77, 407
Hin1II	CATG	7 cut(s)	254, 277, 459, 527, 561, 800, 981
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	3 cut(s)	53, 77, 407
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	4 cut(s)	151, 599, 721, 880
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	5 cut(s)	11, 219, 487, 863, 978
Hpy8I	GTNNAC	4 cut(s)	151, 599, 721, 880
HpyAV	CCTTC	2 cut(s)	17, 238
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	402, 678, 717
HpyCH4V	TGCA	7 cut(s)	151, 471, 557, 665, 740, 796, 851
HpyF3I	CTNAG	2 cut(s)	336, 924
HpySE526I	ACGT	3 cut(s)	402, 678, 717
Hsp92II	CATG	7 cut(s)	254, 277, 459, 527, 561, 800, 981
KflI	GGGWCCC	1 cut(s)	257
Kzo9I	GATC	5 cut(s)	16, 452, 655, 685, 810
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	446, 677
MabI	ACCWGGT	1 cut(s)	932
MaeII	ACGT	3 cut(s)	402, 678, 717
MaeIII	GTNAC	4 cut(s)	385, 476, 928, 941
MalI	GATC	5 cut(s)	18, 454, 657, 687, 812
MboI	GATC	5 cut(s)	16, 452, 655, 685, 810
MboII	GAAGA	5 cut(s)	218, 749, 907, 950, 953
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	5 cut(s)	482, 671, 751, 885, 973
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	160, 430
MnlI	CCTC	7 cut(s)	26, 49, 94, 215, 338, 624, 659
Mox20I	TGGCCA	1 cut(s)	298
Mph1103I	ATGCAT	2 cut(s)	559, 798
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	3 cut(s)	213, 705, 762
Msp20I	TGGCCA	1 cut(s)	298
MspI	CCGG	3 cut(s)	53, 77, 407
MspR9I	CCNGG	7 cut(s)	44, 53, 408, 441, 537, 567, 934
MunI	CAATTG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	5 cut(s)	44, 441, 537, 567, 934
MvnI	CGCG	2 cut(s)	375, 619
NciI	CCSGG	2 cut(s)	53, 408
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	16, 452, 655, 685, 810
NlaIII	CATG	7 cut(s)	254, 277, 459, 527, 561, 800, 981
NlaIV	GGNNCC	5 cut(s)	226, 258, 259, 541, 564
NsiI	ATGCAT	2 cut(s)	559, 798
NspI	RCATGY	2 cut(s)	254, 800
NspV	TTCGAA	1 cut(s)	968
PagI	TCATGA	1 cut(s)	977
PasI	CCCWGGG	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	648
PciI	ACATGT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	473
Pfl23II	CGTACG	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	359, 436, 667
Ple19I	CGATCG	1 cut(s)	658
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	3 cut(s)	224, 257, 540
PscI	ACATGT	1 cut(s)	250
Psp5II	RGGWCCY	3 cut(s)	224, 257, 540
Psp6I	CCWGG	5 cut(s)	42, 439, 535, 565, 932
PspEI	GGTNACC	2 cut(s)	476, 928
PspGI	CCWGG	5 cut(s)	42, 439, 535, 565, 932
PspLI	CGTACG	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	226, 258, 259, 541, 564
PspPI	GGNCC	6 cut(s)	224, 257, 370, 489, 540, 626
PspPPI	RGGWCCY	3 cut(s)	224, 257, 540
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	685
PvuI	CGATCG	1 cut(s)	658
RsaI	GTAC	4 cut(s)	405, 531, 598, 701
RsaNI	GTAC	4 cut(s)	404, 530, 597, 700
SaqAI	TTAA	3 cut(s)	213, 705, 762
SatI	GCNGC	3 cut(s)	358, 435, 666
Sau3AI	GATC	5 cut(s)	16, 452, 655, 685, 810
Sau96I	GGNCC	6 cut(s)	224, 257, 370, 489, 540, 626
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	7 cut(s)	44, 53, 408, 441, 537, 567, 934
SduI	GDGCHC	1 cut(s)	153
SexAI	ACCWGGT	1 cut(s)	932
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	968
SinI	GGWCC	5 cut(s)	224, 257, 370, 489, 540
Sse9I	AATT	5 cut(s)	482, 671, 751, 885, 973
SseBI	AGGCCT	1 cut(s)	648
SsiI	CCGC	3 cut(s)	357, 373, 617
SspI	AATATT	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	648
StyD4I	CCNGG	7 cut(s)	42, 51, 406, 439, 535, 565, 932
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	3 cut(s)	405, 681, 720
TaqI	TCGA	6 cut(s)	81, 125, 658, 813, 950, 968
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	482, 671, 751, 885, 973
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	1 cut(s)	360
Tru1I	TTAA	3 cut(s)	213, 705, 762
Tru9I	TTAA	3 cut(s)	213, 705, 762
TscAI	CASTG	3 cut(s)	208, 242, 730
TseI	GCWGC	2 cut(s)	434, 665
TspDTI	ATGAA	5 cut(s)	290, 297, 512, 800, 966
TspGWI	ACGGA	2 cut(s)	168, 404
TspRI	CASTG	3 cut(s)	208, 242, 730
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	5 cut(s)	224, 257, 370, 489, 540
XapI	RAATTY	2 cut(s)	671, 973
XceI	RCATGY	2 cut(s)	254, 800
Zsp2I	ATGCAT	2 cut(s)	559, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.