Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Forward (+)

46201761 .. 46207222

Gene Structure 5462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGTCGACCTTTCCTGTTGGATTAGGCAAAGGACCAATCCGCACCATTTTTTCGCTTTCCACAATAACATGGATTTCGGCAAAGTTGGGTACCATGATTCTCCTCCTCTTCTCCAGCCAGACATTTCTGTATGGGGATATATTCATCCAAGCCACTGCTTCAGAAAATACAACAGGCCTGCAACTGCATATCTTCAATCAATATGTAGTCATGGATAATGGCATTCTCCAAGTCAATCTTTCAAAACCAGAGGGGATGGTTACCGGAATACAATATAAAGGCATCGACAATCTGCTTGAAGTCCTTGAAGATGAAACCAATAGAGGGTACTGGGATATGGTTTGGTCTGCACCAGGAATTAAGAGAAAGAAAGGCGCATTTGATAGGATGGAAGGAACAAATTTTACGGTTATAGTGGAAACTGAGGATCAGATAGAGCTTTCATTCACCAGAATGTGGGATCCCTCTTTAGAGGGCAAAGTTGTCCCTTTAAACATAGACAAAAGGTTCGTGTTGCTTCGTAACTCGTCGGGTTTCTACACTTACGCCATTTATGAACACTTGAAGGAATGGCCTGCTTTCAACTTGACCAACACCAGGACTGTGTTTAAACTCAGAAAAGACAAGTTTCATTACATGGCAATATCAGACAGCAGGCAAAGACACATGCCCCTTCCCGATGATCGGTCAGAAAAAAGAGGGCAAGCCCTGGCTTACCCGGAGGCGGTCTTGCTCGTCAATCCGGTAGAGCCAGAGTTCAAAGGAGAGGTGGATGACAAATATCAATATTCGATTGAGAACATACATAATCGGGTGCATGGATGGATAGCAAATGACTCACAGGTTGGATTTTGGCAGATTACTCCCAGTGAAGAGTTTAAATCTGGAGGTCCCTTCAAGCAGTGCCTTACTTCACATGTGGGACCCATCACCCTTGCCATCTTTCATAGTACCCATTACTCAGGAGAGGAACTGATAATACAATTTGGGTCCAATGAGCCATGGAAGAAAGTGTTTGGCCCAGTTTTTTTCTATCTTAATTCTTTGGTTGATGGAGCTAACCCTTTCCAGTGTCTATGGGAGGATGCTAAGCAACAGATGAACGATGAAGTTGAAAGGTGGCCATATGATTTTCCAGCTTCAAAGGACTTTCTGTCGCCTGAACAACGAGGAACAGTTAGCGGCAGACTATTGGTCCGCGAAAGGTATGTTACGGATGATAAAGACGTACCGGGAAATGGAACTTTGGTAGGATTGGCAGCTCCAGGAGTTGTTGGATCGTGGCAGTTAGAATGCAAGGGTTACCAATTCTGGACCAAAGCAGACAATAATGGCTACTTCTCTATTCATGGCGTACGCCCAGGGACCTATAATCTTTATGCATGGGTTCCTGGTTTTATTGGTGATTACCGAGATGTTTCTGAAATTGTTGTAACTCCAGATGTTGATGTTGATGTTGATGTGGGTACACTTGTATATGAGCCTCCACGAACTGGCCCAACTCTGTGGGAAATAGGCGTCCCCGATCGAACTGCAGCAGAATTTTACGTCCCAGATCCTAATCCAAAGTACATTAACAAACTCTACGTCAACACTGACAGGTTTAGACAATATGGATTGTGGGAAAGATATGCAGAGTTATATCCTGACAATGACTTGGTATACACAATTGGAGTTAGCGATTATAGAAAGGATTTCTTCTTTGCTCAGGTTACCAGGAAGACAGGTAATAACACATACAAAGGATCAACATGGCAGATTAGGTTTAACCTAGACAATGTGGACAAGAACACTACCTACAAACTACGAGTATCACTTGCAACAGCACATGTTTCTGAATTACAAGTTCGGATCAATGACCCCGATACAGAGAATCCTCCTCTATTTACTACCGGACAGATTGGGAACGACAACACGATCGCGAGGCATGGAATTCATGGACTGTACAGGCTATACAATGTGGTCATTCCAAGCGCTCAGCTAGTCGAAGGGAACAATACCATATTTCTAACTCGAGAATTGAGTGTCAGCCCCTTTCAGGGAATCATGTATGATTATATTCGTTTAGAAGGCCCCCAATCTTCTAATGACAACAATACTATTGGATTTAGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

705

Amino Acids

80.33

Weight (kDa)

5.3

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	53 - 257	7.3e-94	Rhamnogalacturonate lyase family
fn3_3	PF14686	413 - 480	1.4e-24	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	501 - 689	2.6e-51	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	456, 1493
AccI	GTMKAC	2 cut(s)	5, 1662
AccII	CGCG	2 cut(s)	1200, 1922
AciI	CCGC	4 cut(s)	40, 725, 1182, 1198
AclWI	GGATC	7 cut(s)	435, 455, 468, 1285, 1550, 1753, 1859
AcoI	YGGCCR	1 cut(s)	1121
AcsI	RAATTY	3 cut(s)	400, 1541, 1932
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	1518
AfaI	GTAC	8 cut(s)	91, 329, 952, 1230, 1356, 1468, 1571, 1946
AfeI	AGCGCT	1 cut(s)	1975
AfiI	CCNNNNNNNGG	9 cut(s)	324, 456, 597, 684, 724, 1238, 1493, 2038, 2039
AflIII	ACRYGT	2 cut(s)	916, 1828
AhdI	GACNNNNNGTC	2 cut(s)	1153, 1193
AjnI	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1715
AluBI	AGCT	5 cut(s)	439, 1058, 1139, 1262, 1981
AluI	AGCT	5 cut(s)	439, 1058, 1139, 1262, 1981
AlwI	GGATC	7 cut(s)	435, 455, 468, 1285, 1550, 1753, 1859
Ama87I	CYCGRG	1 cut(s)	2013
Aor51HI	AGCGCT	1 cut(s)	1975
AoxI	GGCC	6 cut(s)	175, 572, 1018, 1121, 1495, 2071
ApeKI	GCWGC	2 cut(s)	1259, 1535
ApoI	RAATTY	3 cut(s)	400, 1541, 1932
ArsI	GACNNNNNNTTYG	4 cut(s)	491, 523, 1572, 1604
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	377, 1976
AsuC2I	CCSGG	2 cut(s)	719, 1233
AsuHPI	GGTGA	3 cut(s)	439, 922, 1415
AvaI	CYCGRG	1 cut(s)	2013
AvaII	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
BaeI	ACNNNNGTAYC	2 cut(s)	1458, 1491
BalI	TGGCCA	1 cut(s)	1123
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1727
BbvI	GCAGC	2 cut(s)	1271, 1547
BccI	CCATC	6 cut(s)	250, 382, 816, 935, 947, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	1514, 1548
BciT130I	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1717
BcnI	CCSGG	2 cut(s)	719, 1233
BfaI	CTAG	2 cut(s)	1772, 1982
BfmI	CTRYAG	1 cut(s)	1533
BfoI	RGCGCY	1 cut(s)	1977
BisI	GCNGC	3 cut(s)	1183, 1260, 1536
BlpI	GCTNAGC	2 cut(s)	1089, 1977
BlsI	GCNGC	3 cut(s)	1184, 1261, 1537
Bme1390I	CCNGG	9 cut(s)	354, 598, 710, 719, 1233, 1266, 1362, 1392, 1717
Bme18I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
BmeRI	GACNNNNNGTC	2 cut(s)	1153, 1193
BmeT110I	CYCGRG	1 cut(s)	2013
BmiI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2074
BmrFI	CCNGG	9 cut(s)	354, 598, 710, 719, 1233, 1266, 1362, 1392, 1717
BmrI	ACTGGG	3 cut(s)	340, 861, 1016
BmsI	GCATC	2 cut(s)	291, 1075
BmuI	ACTGGG	3 cut(s)	340, 861, 1016
BpiI	GAAGAC	1 cut(s)	1727
BpmI	CTGGAG	4 cut(s)	97, 906, 1248, 1422
Bpu10I	CCTNAGC	1 cut(s)	1707
Bpu1102I	GCTNAGC	2 cut(s)	1089, 1977
BpuMI	CCSGG	2 cut(s)	719, 1233
BsaBI	GATNNNNATC	1 cut(s)	1560
BsaHI	GRCGYC	1 cut(s)	1518
BsaJI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BsaWI	WCCGGW	3 cut(s)	263, 742, 1892
Bsc4I	CCNNNNNNNGG	9 cut(s)	324, 456, 597, 684, 724, 1238, 1493, 2038, 2039
Bse1I	ACTGG	5 cut(s)	335, 867, 1022, 1069, 1498
Bse8I	GATNNNNATC	1 cut(s)	1560
BseBI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1717
BseDI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BseGI	GGATG	7 cut(s)	144, 261, 393, 778, 827, 1090, 1222
BseJI	GATNNNNATC	1 cut(s)	1560
BseLI	CCNNNNNNNGG	9 cut(s)	324, 456, 597, 684, 724, 1238, 1493, 2038, 2039
BseMII	CTCAG	5 cut(s)	414, 628, 975, 1721, 1991
BseNI	ACTGG	5 cut(s)	335, 867, 1022, 1069, 1498
BseRI	GAGGAG	3 cut(s)	92, 95, 1869
BseXI	GCAGC	2 cut(s)	1271, 1547
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	2 cut(s)	1200, 1922
Bsh1285I	CGRYCG	2 cut(s)	1528, 1920
BshFI	GGCC	6 cut(s)	177, 574, 1020, 1123, 1497, 2073
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	2 cut(s)	1528, 1920
BsiHKCI	CYCGRG	1 cut(s)	2013
BsiSI	CCGG	5 cut(s)	264, 719, 743, 1232, 1893
BsiWI	CGTACG	1 cut(s)	1354
BslFI	GGGAC	6 cut(s)	470, 876, 936, 1378, 1505, 1535
BslI	CCNNNNNNNGG	9 cut(s)	324, 456, 597, 684, 724, 1238, 1493, 2038, 2039
BsmFI	GGGAC	6 cut(s)	470, 876, 936, 1378, 1505, 1535
BsmI	GAATGC	2 cut(s)	222, 1298
BsnI	GGCC	6 cut(s)	177, 574, 1020, 1123, 1497, 2073
BsoBI	CYCGRG	1 cut(s)	2013
Bsp1407I	TGTACA	1 cut(s)	1944
Bsp143I	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
Bsp1720I	GCTNAGC	2 cut(s)	1089, 1977
Bsp19I	CCATGG	1 cut(s)	1001
Bsp68I	TCGCGA	1 cut(s)	1922
BspACI	CCGC	4 cut(s)	40, 725, 1182, 1198
BspANI	GGCC	6 cut(s)	177, 574, 1020, 1123, 1497, 2073
BspCNI	CTCAG	5 cut(s)	415, 627, 974, 1720, 1990
BspFNI	CGCG	2 cut(s)	1200, 1922
BspLI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2074
BspMAI	CTGCAG	1 cut(s)	1537
BspPI	GGATC	7 cut(s)	435, 455, 468, 1285, 1550, 1753, 1859
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	1944
BsrI	ACTGG	5 cut(s)	335, 867, 1022, 1069, 1498
BssECI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BssMI	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
BssNAI	GTATAC	1 cut(s)	1663
BssNI	GRCGYC	1 cut(s)	1518
BssT1I	CCWWGG	1 cut(s)	1001
Bst1107I	GTATAC	1 cut(s)	1663
Bst2UI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1717
Bst4CI	ACNGT	4 cut(s)	409, 604, 1177, 1944
Bst6I	CTCTTC	2 cut(s)	113, 867
BstACI	GRCGYC	1 cut(s)	1518
BstAUI	TGTACA	1 cut(s)	1944
BstC8I	GCNNGC	4 cut(s)	179, 576, 656, 705
BstDEI	CTNAG	6 cut(s)	423, 614, 961, 1089, 1707, 1977
BstDSI	CCRYGG	1 cut(s)	1001
BstEII	GGTNACC	3 cut(s)	259, 1301, 1711
BstF5I	GGATG	7 cut(s)	144, 261, 393, 778, 827, 1090, 1222
BstFNI	CGCG	2 cut(s)	1200, 1922
BstH2I	RGCGCY	1 cut(s)	1977
BstHHI	GCGC	2 cut(s)	377, 1976
BstKTI	GATC	9 cut(s)	430, 463, 685, 1280, 1528, 1558, 1748, 1854, 1920
BstMBI	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
BstMCI	CGRYCG	2 cut(s)	1528, 1920
BstNI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1717
BstNSI	RCATGY	3 cut(s)	670, 920, 1832
BstPI	GGTNACC	3 cut(s)	259, 1301, 1711
BstSCI	CCNGG	9 cut(s)	352, 596, 708, 717, 1231, 1264, 1360, 1390, 1715
BstSFI	CTRYAG	1 cut(s)	1533
BstUI	CGCG	2 cut(s)	1200, 1922
BstV1I	GCAGC	2 cut(s)	1271, 1547
BstV2I	GAAGAC	1 cut(s)	1727
BstX2I	RGATCY	2 cut(s)	460, 1555
BstXI	CCANNNNNNTGG	1 cut(s)	1506
BstYI	RGATCY	2 cut(s)	460, 1555
BstZ17I	GTATAC	1 cut(s)	1663
BsuRI	GGCC	6 cut(s)	177, 574, 1020, 1123, 1497, 2073
BtgI	CCRYGG	1 cut(s)	1001
BtsCI	GGATG	7 cut(s)	144, 261, 393, 778, 827, 1090, 1222
BtsI	GCAGTG	2 cut(s)	153, 908
BtsIMutI	CAGTG	5 cut(s)	153, 874, 908, 1076, 1593
BtuMI	TCGCGA	1 cut(s)	1922
Cac8I	GCNNGC	4 cut(s)	179, 576, 656, 705
CfoI	GCGC	2 cut(s)	377, 1976
CseI	GACGC	1 cut(s)	1507
Csp6I	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1467, 1570, 1945
CviQI	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1467, 1570, 1945
DdeI	CTNAG	6 cut(s)	423, 614, 961, 1089, 1707, 1977
DpnI	GATC	9 cut(s)	429, 462, 684, 1279, 1527, 1557, 1747, 1853, 1919
DpnII	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
DraI	TTTAAA	3 cut(s)	492, 610, 880
DriI	GACNNNNNGTC	2 cut(s)	1153, 1193
EaeI	YGGCCR	1 cut(s)	1121
Eam1104I	CTCTTC	2 cut(s)	113, 867
Eam1105I	GACNNNNNGTC	2 cut(s)	1153, 1193
EarI	CTCTTC	2 cut(s)	113, 867
Eco130I	CCWWGG	1 cut(s)	1001
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
Eco47III	AGCGCT	1 cut(s)	1975
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	2013
Eco91I	GGTNACC	3 cut(s)	259, 1301, 1711
EcoO109I	RGGNCCY	4 cut(s)	890, 923, 1365, 2072
EcoO65I	GGTNACC	3 cut(s)	259, 1301, 1711
EcoRI	GAATTC	1 cut(s)	1932
EcoRII	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1715
EcoT14I	CCWWGG	1 cut(s)	1001
EcoT22I	ATGCAT	1 cut(s)	1384
ErhI	CCWWGG	1 cut(s)	1001
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 1682, 1714
FaqI	GGGAC	6 cut(s)	470, 876, 936, 1378, 1505, 1535
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	2 cut(s)	5, 1662
Fnu4HI	GCNGC	3 cut(s)	1183, 1260, 1536
FokI	GGATG	7 cut(s)	131, 268, 400, 785, 834, 1097, 1229
Fsp4HI	GCNGC	3 cut(s)	1183, 1260, 1536
FspBI	CTAG	2 cut(s)	1772, 1982
GlaI	GCGC	2 cut(s)	376, 1975
GluI	GCNGC	3 cut(s)	1183, 1260, 1536
GsuI	CTGGAG	4 cut(s)	97, 906, 1248, 1422
HaeII	RGCGCY	1 cut(s)	1977
HaeIII	GGCC	6 cut(s)	177, 574, 1020, 1123, 1497, 2073
HapII	CCGG	5 cut(s)	264, 719, 743, 1232, 1893
HgaI	GACGC	1 cut(s)	1507
HhaI	GCGC	2 cut(s)	377, 1976
Hin1I	GRCGYC	1 cut(s)	1518
Hin6I	GCGC	2 cut(s)	375, 1974
HinP1I	GCGC	2 cut(s)	375, 1974
HincII	GTYRAC	2 cut(s)	6, 1591
HindII	GTYRAC	2 cut(s)	6, 1591
HinfI	GANTC	4 cut(s)	97, 836, 1873, 2043
HpaII	CCGG	5 cut(s)	264, 719, 743, 1232, 1893
HphI	GGTGA	3 cut(s)	439, 922, 1415
Hpy166II	GTNNAC	5 cut(s)	6, 1469, 1591, 1663, 1783
Hpy188I	TCNGA	8 cut(s)	163, 432, 617, 649, 691, 1423, 1837, 1851
Hpy188III	TCNNGA	8 cut(s)	677, 885, 963, 1312, 1439, 1646, 1921, 2015
Hpy8I	GTNNAC	5 cut(s)	6, 1469, 1591, 1663, 1783
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	6 cut(s)	386, 559, 683, 904, 1982, 2063
HpyCH4III	ACNGT	4 cut(s)	409, 604, 1177, 1944
HpyCH4IV	ACGT	3 cut(s)	1227, 1548, 1587
HpyCH4V	TGCA	9 cut(s)	181, 187, 350, 817, 1296, 1382, 1535, 1634, 1820
HpyF3I	CTNAG	6 cut(s)	423, 614, 961, 1089, 1707, 1977
HpySE526I	ACGT	3 cut(s)	1227, 1548, 1587
Hsp92I	GRCGYC	1 cut(s)	1518
HspAI	GCGC	2 cut(s)	375, 1974
KflI	GGGWCCC	1 cut(s)	923
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
LmnI	GCTCC	2 cut(s)	1055, 1267
Lsp1109I	GCAGC	2 cut(s)	1271, 1547
LweI	GCATC	2 cut(s)	291, 1075
MaeI	CTAG	2 cut(s)	1772, 1982
MaeII	ACGT	3 cut(s)	1227, 1548, 1587
MaeIII	GTNAC	6 cut(s)	259, 521, 1210, 1301, 1432, 1711
MalI	GATC	9 cut(s)	429, 462, 684, 1279, 1527, 1557, 1747, 1853, 1919
MboI	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
MboII	GAAGA	8 cut(s)	100, 184, 320, 884, 1018, 1690, 1732, 2073
MfeI	CAATTG	1 cut(s)	1668
MflI	RGATCY	2 cut(s)	460, 1555
MlsI	TGGCCA	1 cut(s)	1123
MluNI	TGGCCA	1 cut(s)	1123
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	826, 1255
Mox20I	TGGCCA	1 cut(s)	1123
Mph1103I	ATGCAT	1 cut(s)	1384
MscI	TGGCCA	1 cut(s)	1123
MseI	TTAA	7 cut(s)	360, 491, 609, 879, 1038, 1575, 1767
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	1123
MspI	CCGG	5 cut(s)	264, 719, 743, 1232, 1893
MspR9I	CCNGG	9 cut(s)	354, 598, 710, 719, 1233, 1266, 1362, 1392, 1717
MssI	GTTTAAAC	1 cut(s)	610
MunI	CAATTG	1 cut(s)	1668
Mva1269I	GAATGC	2 cut(s)	222, 1298
MvaI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1717
MvnI	CGCG	2 cut(s)	1200, 1922
NciI	CCSGG	2 cut(s)	719, 1233
NcoI	CCATGG	1 cut(s)	1001
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
NlaIV	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2074
NruI	TCGCGA	1 cut(s)	1922
NsiI	ATGCAT	1 cut(s)	1384
NspI	RCATGY	3 cut(s)	670, 920, 1832
PaeR7I	CTCGAG	1 cut(s)	2013
PasI	CCCWGGG	1 cut(s)	1361
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	2 cut(s)	916, 1828
PctI	GAATGC	2 cut(s)	222, 1298
PfeI	GAWTC	3 cut(s)	97, 1873, 2043
Pfl23II	CGTACG	1 cut(s)	1354
PflMI	CCANNNNNTGG	2 cut(s)	456, 1493
PfoI	TCCNGGA	1 cut(s)	1264
PkrI	GCNGC	3 cut(s)	1184, 1261, 1537
Ple19I	CGATCG	2 cut(s)	1528, 1920
PleI	GAGTC	1 cut(s)	830
PmeI	GTTTAAAC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	830
PpuMI	RGGWCCY	3 cut(s)	890, 923, 1365
PscI	ACATGT	2 cut(s)	916, 1828
Psp5II	RGGWCCY	3 cut(s)	890, 923, 1365
Psp6I	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1715
PspEI	GGTNACC	3 cut(s)	259, 1301, 1711
PspGI	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1715
PspLI	CGTACG	1 cut(s)	1354
PspN4I	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2074
PspPPI	RGGWCCY	3 cut(s)	890, 923, 1365
PsrI	GAACNNNNNNTAC	6 cut(s)	388, 420, 963, 995, 1781, 1813
PstI	CTGCAG	1 cut(s)	1537
PsuI	RGATCY	2 cut(s)	460, 1555
PvuI	CGATCG	2 cut(s)	1528, 1920
RruI	TCGCGA	1 cut(s)	1922
RsaI	GTAC	8 cut(s)	91, 329, 952, 1230, 1356, 1468, 1571, 1946
RsaNI	GTAC	8 cut(s)	90, 328, 951, 1229, 1355, 1467, 1570, 1945
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	7 cut(s)	360, 491, 609, 879, 1038, 1575, 1767
SatI	GCNGC	3 cut(s)	1183, 1260, 1536
Sau3AI	GATC	9 cut(s)	427, 460, 682, 1277, 1525, 1555, 1745, 1851, 1917
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	9 cut(s)	354, 598, 710, 719, 1233, 1266, 1362, 1392, 1717
SfaNI	GCATC	2 cut(s)	291, 1075
SfcI	CTRYAG	1 cut(s)	1533
Sfr274I	CTCGAG	1 cut(s)	2013
SinI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
SlaI	CTCGAG	1 cut(s)	2013
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	2013
SmoI	CTYRAG	1 cut(s)	2013
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	4 cut(s)	40, 725, 1182, 1198
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	2 cut(s)	1772, 1982
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	9 cut(s)	352, 596, 708, 717, 1231, 1264, 1360, 1390, 1715
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	4 cut(s)	409, 604, 1177, 1944
TaiI	ACGT	3 cut(s)	1230, 1551, 1590
TaqI	TCGA	6 cut(s)	5, 285, 791, 1528, 1986, 2014
TaqII	GACCGA	1 cut(s)	675
TatI	WGTACW	2 cut(s)	1569, 1944
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	3 cut(s)	97, 1873, 2043
Tru1I	TTAA	7 cut(s)	360, 491, 609, 879, 1038, 1575, 1767
Tru9I	TTAA	7 cut(s)	360, 491, 609, 879, 1038, 1575, 1767
TscAI	CASTG	5 cut(s)	160, 874, 908, 1076, 1600
TseI	GCWGC	2 cut(s)	1259, 1535
TspGWI	ACGGA	1 cut(s)	1229
TspRI	CASTG	5 cut(s)	160, 874, 908, 1076, 1600
Van91I	CCANNNNNTGG	2 cut(s)	456, 1493
VpaK11BI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
XapI	RAATTY	3 cut(s)	400, 1541, 1932
XceI	RCATGY	3 cut(s)	670, 920, 1832
XhoI	CTCGAG	1 cut(s)	2013
XmiI	GTMKAC	2 cut(s)	5, 1662
XspI	CTAG	2 cut(s)	1772, 1982
Zsp2I	ATGCAT	1 cut(s)	1384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.