Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005305.1

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Reverse (-)

10721 .. 15135

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005305.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atgaagtttgataccttactcgtagaatataatggccgaagttgccggaaaagcaagaaaacccgccagaagcaccgaagcttactggctttgattctttctcagaccttatcatctggacaaacatacaacatagctagatcggcgaggtcgagaggaagctgccgctaccggtccgtcgccgagaagtggccggaattagagactcagccggccaacaagaaaagctttagggcttcttcctaccaccgtcgccagtctttcggatgtgacgtctggaggtgcctggacggaggagaaaaggtcgggtcaccgccgctgcaaaacgactcgtcgacttgggtcggtaaaggaccaatcagcaccattttttcgctttccacaataacatggatttcgccaaagttgggtaccatgattcttctcctcttctccagccagacatttctggatgagcatatattcatccaagctactgcttcagaaaatacaacaggcctgcaactgcatatcttcaatcaatatgtggtcatggataatggcattctccaagtcaatctttcaaaaccagaggggatggttaccggaatacaatataaaggcatcgacaatctgcttgaagttcttgaagatgaaaccaatagagggtactgggatatggtttggtctgcaccgggaatttctagaaagaaaggcgcatttgataggatggaaggaacaaattttacggttatagtggaaactgaggatcagatagagctttcattcaccagaatgtgggatccctctttagagggcaaagtcgtccctttaaacatagacaaaaggttcgtgttgcttcgtaactcttcgggtttctacacttacgccatttatgaacacttgaaggagtggcctgctttcaacttgaccaacaccaggactataaacggcggagccccaaaacaaccaaatcttaaaacaaccaacgaggtgatgaagtttgataccttactcgtagaatataatggccgaagttgccggaaaagcaagaaaacccgccagaagcaccgaagcttactggctttgattctttctcataccttatcatctggacaaacatacaacatagctagatcggcgaggtcgagaggaagctgcagctaccggtccgtcgccgggaagtggccggaattagagactccgccggccaacaagaaaagctttagggcttcttcctaccaccgtctttcggagtatgagcgactgcgctctgcttcgcgcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

422

Amino Acids

48.0

Weight (kDa)

9.8

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	282, 410
AccB7I	CCANNNNNTGG	1 cut(s)	777
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	1 cut(s)	1261
AciI	CCGC	7 cut(s)	64, 166, 314, 317, 933, 1039, 1184
AclWI	GGATC	3 cut(s)	756, 776, 789
AcoI	YGGCCR	6 cut(s)	34, 191, 213, 1009, 1166, 1188
AcsI	RAATTY	2 cut(s)	678, 721
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	2 cut(s)	412, 650
AfiI	CCNNNNNNNGG	8 cut(s)	189, 407, 645, 777, 918, 1158, 1164, 1231
AgeI	ACCGGT	2 cut(s)	171, 1146
AgsI	TTSAA	6 cut(s)	517, 564, 620, 629, 886, 904
AjnI	CCWGG	2 cut(s)	285, 917
Alw26I	GTCTC	2 cut(s)	197, 1172
AlwI	GGATC	3 cut(s)	756, 776, 789
AoxI	GGCC	8 cut(s)	34, 191, 213, 496, 893, 1009, 1166, 1188
ApeKI	GCWGC	4 cut(s)	162, 319, 1137, 1140
ApoI	RAATTY	2 cut(s)	678, 721
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AsiGI	ACCGGT	2 cut(s)	171, 1146
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	3 cut(s)	698, 1251, 1263
AspS9I	GGNCC	3 cut(s)	174, 353, 1149
AsuC2I	CCSGG	2 cut(s)	675, 1159
AsuHPI	GGTGA	3 cut(s)	303, 760, 985
AvaII	GGWCC	3 cut(s)	174, 353, 1149
BamHI	GGATCC	1 cut(s)	781
BanI	GGYRCC	2 cut(s)	282, 410
BanII	GRGCYC	1 cut(s)	940
BbvI	GCAGC	4 cut(s)	149, 306, 1124, 1152
BccI	CCATC	2 cut(s)	571, 703
BceAI	ACGGC	1 cut(s)	946
BciT130I	CCWGG	2 cut(s)	287, 919
BcnI	CCSGG	2 cut(s)	675, 1159
BcoDI	GTCTC	2 cut(s)	197, 1172
BfaI	CTAG	3 cut(s)	138, 684, 1113
BfmI	CTRYAG	1 cut(s)	1138
BisI	GCNGC	6 cut(s)	163, 166, 317, 320, 1138, 1141
BlsI	GCNGC	6 cut(s)	164, 167, 318, 321, 1139, 1142
Bme1390I	CCNGG	4 cut(s)	287, 675, 919, 1159
Bme18I	GGWCC	3 cut(s)	174, 353, 1149
BmgT120I	GGNCC	3 cut(s)	174, 353, 1149
BmiI	GGNNCC	4 cut(s)	284, 412, 783, 937
BmrFI	CCNGG	4 cut(s)	287, 675, 919, 1159
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	2 cut(s)	298, 418
BpuMI	CCSGG	2 cut(s)	675, 1159
BsaHI	GRCGYC	1 cut(s)	273
BsaWI	WCCGGW	3 cut(s)	171, 584, 1146
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	8 cut(s)	189, 407, 645, 777, 918, 1158, 1164, 1231
Bse118I	RCCGGY	4 cut(s)	171, 211, 1146, 1186
Bse1I	ACTGG	4 cut(s)	90, 256, 656, 1065
BseBI	CCWGG	2 cut(s)	287, 919
BseGI	GGATG	5 cut(s)	272, 457, 465, 582, 714
BseLI	CCNNNNNNNGG	8 cut(s)	189, 407, 645, 777, 918, 1158, 1164, 1231
BseMII	CTCAG	3 cut(s)	116, 221, 735
BseNI	ACTGG	4 cut(s)	90, 256, 656, 1065
BseRI	GAGGAG	2 cut(s)	309, 416
BseXI	GCAGC	4 cut(s)	149, 306, 1124, 1152
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	1261
BshFI	GGCC	8 cut(s)	36, 193, 215, 498, 895, 1011, 1168, 1190
BshNI	GGYRCC	2 cut(s)	282, 410
BshTI	ACCGGT	2 cut(s)	171, 1146
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	8 cut(s)	189, 407, 645, 777, 918, 1158, 1164, 1231
BsmAI	GTCTC	2 cut(s)	197, 1172
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	8 cut(s)	36, 193, 215, 498, 895, 1011, 1168, 1190
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp143I	GATC	4 cut(s)	140, 748, 781, 1115
BspACI	CCGC	7 cut(s)	64, 166, 314, 317, 933, 1039, 1184
BspANI	GGCC	8 cut(s)	36, 193, 215, 498, 895, 1011, 1168, 1190
BspCNI	CTCAG	3 cut(s)	115, 220, 736
BspFNI	CGCG	1 cut(s)	1261
BspLI	GGNNCC	4 cut(s)	284, 412, 783, 937
BspMAI	CTGCAG	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	756, 776, 789
BspT107I	GGYRCC	2 cut(s)	282, 410
BsrFI	RCCGGY	4 cut(s)	171, 211, 1146, 1186
BsrI	ACTGG	4 cut(s)	90, 256, 656, 1065
BssAI	RCCGGY	4 cut(s)	171, 211, 1146, 1186
BssMI	GATC	4 cut(s)	140, 748, 781, 1115
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	287, 919
Bst4CI	ACNGT	3 cut(s)	251, 730, 1226
Bst6I	CTCTTC	2 cut(s)	434, 853
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	213, 500, 897, 1188
BstDEI	CTNAG	3 cut(s)	102, 207, 744
BstEII	GGTNACC	2 cut(s)	309, 580
BstF5I	GGATG	5 cut(s)	272, 457, 465, 582, 714
BstFNI	CGCG	1 cut(s)	1261
BstHHI	GCGC	3 cut(s)	698, 1251, 1263
BstKTI	GATC	4 cut(s)	143, 751, 784, 1118
BstMAI	GTCTC	2 cut(s)	197, 1172
BstMBI	GATC	4 cut(s)	140, 748, 781, 1115
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 51, 143, 1017, 1026, 1118
BstNI	CCWGG	2 cut(s)	287, 919
BstPAI	GACNNNNGTC	1 cut(s)	341
BstPI	GGTNACC	2 cut(s)	309, 580
BstSCI	CCNGG	4 cut(s)	285, 673, 917, 1157
BstSFI	CTRYAG	1 cut(s)	1138
BstUI	CGCG	1 cut(s)	1261
BstV1I	GCAGC	4 cut(s)	149, 306, 1124, 1152
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	8 cut(s)	36, 193, 215, 498, 895, 1011, 1168, 1190
BtsCI	GGATG	5 cut(s)	272, 457, 465, 582, 714
Cac8I	GCNNGC	4 cut(s)	213, 500, 897, 1188
CfoI	GCGC	3 cut(s)	698, 1251, 1263
Cfr10I	RCCGGY	4 cut(s)	171, 211, 1146, 1186
Cfr13I	GGNCC	3 cut(s)	174, 353, 1149
CpoI	CGGWCCG	2 cut(s)	174, 1149
Csp6I	GTAC	2 cut(s)	411, 649
CspAI	ACCGGT	2 cut(s)	171, 1146
CspI	CGGWCCG	2 cut(s)	174, 1149
CviAII	CATG	3 cut(s)	390, 415, 532
CviQI	GTAC	2 cut(s)	411, 649
DdeI	CTNAG	3 cut(s)	102, 207, 744
DpnI	GATC	4 cut(s)	142, 750, 783, 1117
DpnII	GATC	4 cut(s)	140, 748, 781, 1115
DraI	TTTAAA	1 cut(s)	813
EaeI	YGGCCR	6 cut(s)	34, 191, 213, 1009, 1166, 1188
Eam1104I	CTCTTC	2 cut(s)	434, 853
EarI	CTCTTC	2 cut(s)	434, 853
EciI	GGCGGA	2 cut(s)	948, 1173
Eco147I	AGGCCT	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	940
Eco47I	GGWCC	3 cut(s)	174, 353, 1149
Eco57I	CTGAAG	1 cut(s)	465
Eco91I	GGTNACC	2 cut(s)	309, 580
EcoO65I	GGTNACC	2 cut(s)	309, 580
EcoRII	CCWGG	2 cut(s)	285, 917
EcoT38I	GRGCYC	1 cut(s)	940
FaeI	CATG	3 cut(s)	393, 418, 535
FalI	AAGNNNNNCTT	6 cut(s)	212, 244, 543, 575, 1187, 1219
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	3 cut(s)	389, 414, 531
FauI	CCCGC	2 cut(s)	71, 1046
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	6 cut(s)	163, 166, 317, 320, 1138, 1141
FokI	GGATG	5 cut(s)	279, 452, 464, 589, 721
FriOI	GRGCYC	1 cut(s)	940
Fsp4HI	GCNGC	6 cut(s)	163, 166, 317, 320, 1138, 1141
FspBI	CTAG	3 cut(s)	138, 684, 1113
GlaI	GCGC	3 cut(s)	697, 1250, 1262
GluI	GCNGC	6 cut(s)	163, 166, 317, 320, 1138, 1141
GsuI	CTGGAG	2 cut(s)	298, 418
HaeIII	GGCC	8 cut(s)	36, 193, 215, 498, 895, 1011, 1168, 1190
HhaI	GCGC	3 cut(s)	698, 1251, 1263
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	393, 418, 535
Hin6I	GCGC	3 cut(s)	696, 1249, 1261
HinP1I	GCGC	3 cut(s)	696, 1249, 1261
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	4 cut(s)	79, 226, 1054, 1201
HinfI	GANTC	6 cut(s)	94, 205, 329, 418, 1069, 1180
HphI	GGTGA	3 cut(s)	303, 760, 985
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	6 cut(s)	105, 266, 484, 753, 1234, 1268
Hpy188III	TCNNGA	8 cut(s)	117, 153, 277, 449, 626, 684, 1092, 1128
Hpy8I	GTNNAC	1 cut(s)	336
Hpy99I	CGWCG	4 cut(s)	182, 255, 337, 1157
HpyAV	CCTTC	2 cut(s)	707, 880
HpyCH4III	ACNGT	3 cut(s)	251, 730, 1226
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	322, 502, 508, 671, 1140
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 51, 143, 1017, 1026, 1118
HpyF3I	CTNAG	3 cut(s)	102, 207, 744
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	393, 418, 535
HspAI	GCGC	3 cut(s)	696, 1249, 1261
KpnI	GGTACC	1 cut(s)	414
KroI	GCCGGC	2 cut(s)	211, 1186
KroNI	GCCGGC	2 cut(s)	213, 1188
Kzo9I	GATC	4 cut(s)	140, 748, 781, 1115
LmnI	GCTCC	1 cut(s)	935
Lsp1109I	GCAGC	4 cut(s)	149, 306, 1124, 1152
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	3 cut(s)	138, 684, 1113
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	4 cut(s)	269, 309, 580, 842
MalI	GATC	4 cut(s)	142, 750, 783, 1117
MboI	GATC	4 cut(s)	140, 748, 781, 1115
MboII	GAAGA	7 cut(s)	231, 413, 421, 505, 641, 840, 1206
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	4 cut(s)	197, 678, 721, 1172
MlyI	GAGTC	3 cut(s)	199, 323, 1174
MroNI	GCCGGC	2 cut(s)	211, 1186
MseI	TTAA	2 cut(s)	812, 957
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	319
MspR9I	CCNGG	4 cut(s)	287, 675, 919, 1159
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	287, 919
MvnI	CGCG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	6 cut(s)	42, 51, 143, 1017, 1026, 1118
NaeI	GCCGGC	2 cut(s)	213, 1188
NciI	CCSGG	2 cut(s)	675, 1159
NdeII	GATC	4 cut(s)	140, 748, 781, 1115
NgoMIV	GCCGGC	2 cut(s)	211, 1186
NlaIII	CATG	3 cut(s)	393, 418, 535
NlaIV	GGNNCC	4 cut(s)	284, 412, 783, 937
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	269, 309
PceI	AGGCCT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 270, 1124
PctI	GAATGC	1 cut(s)	543
PdiI	GCCGGC	2 cut(s)	213, 1188
PfeI	GAWTC	3 cut(s)	94, 418, 1069
PflMI	CCANNNNNTGG	1 cut(s)	777
PinAI	ACCGGT	2 cut(s)	171, 1146
PkrI	GCNGC	6 cut(s)	164, 167, 318, 321, 1139, 1142
PleI	GAGTC	3 cut(s)	199, 323, 1174
PpsI	GAGTC	3 cut(s)	199, 323, 1174
PshAI	GACNNNNGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	285, 917
PspEI	GGTNACC	2 cut(s)	309, 580
PspGI	CCWGG	2 cut(s)	285, 917
PspN4I	GGNNCC	4 cut(s)	284, 412, 783, 937
PspPI	GGNCC	3 cut(s)	174, 353, 1149
PsrI	GAACNNNNNNTAC	2 cut(s)	709, 741
PstI	CTGCAG	1 cut(s)	1142
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	2 cut(s)	412, 650
RsaNI	GTAC	2 cut(s)	411, 649
RseI	CAYNNNNRTG	1 cut(s)	773
Rsr2I	CGGWCCG	2 cut(s)	174, 1149
RsrII	CGGWCCG	2 cut(s)	174, 1149
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	812, 957
SatI	GCNGC	6 cut(s)	163, 166, 317, 320, 1138, 1141
Sau3AI	GATC	4 cut(s)	140, 748, 781, 1115
Sau96I	GGNCC	3 cut(s)	174, 353, 1149
SchI	GAGTC	3 cut(s)	199, 323, 1174
ScrFI	CCNGG	4 cut(s)	287, 675, 919, 1159
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	1 cut(s)	1138
SinI	GGWCC	3 cut(s)	174, 353, 1149
SmiMI	CAYNNNNRTG	1 cut(s)	773
Sse9I	AATT	4 cut(s)	197, 678, 721, 1172
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	7 cut(s)	64, 166, 314, 317, 933, 1039, 1184
SspMI	CTAG	3 cut(s)	138, 684, 1113
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	285, 673, 917, 1157
TaaI	ACNGT	3 cut(s)	251, 730, 1226
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	4 cut(s)	152, 335, 606, 1127
TasI	AATT	4 cut(s)	197, 678, 721, 1172
TauI	GCSGC	2 cut(s)	168, 319
TfiI	GAWTC	3 cut(s)	94, 418, 1069
Tru1I	TTAA	2 cut(s)	812, 957
Tru9I	TTAA	2 cut(s)	812, 957
TseFI	GTSAC	2 cut(s)	269, 309
TseI	GCWGC	4 cut(s)	162, 319, 1137, 1140
Tsp45I	GTSAC	2 cut(s)	269, 309
TspDTI	ATGAA	6 cut(s)	17, 454, 648, 753, 891, 992
TspGWI	ACGGA	3 cut(s)	166, 306, 1141
Van91I	CCANNNNNTGG	1 cut(s)	777
VpaK11BI	GGWCC	3 cut(s)	174, 353, 1149
XapI	RAATTY	2 cut(s)	678, 721
XbaI	TCTAGA	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	335
XspI	CTAG	3 cut(s)	138, 684, 1113
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.