Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008190

Physical Location & Seq

Genomic Coordinates Reverse (-)

12722023 .. 12727874

Gene Structure 5852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGTCGACCTTTCCTGTTGGATTAGGCAAAGGACCAATCCGCACCGTTTTTTCGCTTTCCACAATAACATGGATTTCGGCAAAGTTGGGTACCATGATTCTCCTCCTCTTCTCCGGCCAGACATTTCTGGATGAGGATATATTCATCCAAGCCACTGCTTCAGAAAATACAACAGGCCTGCAACTGCATATCTTCAATCAATATGTGGTCATGGATAATGGCATTCTCCAAGTCAATCTTTCAAAACCAGAGGGGATGGTTACTGGAATACAATATAAAGGCATCGACAATCTGCTTGAAGTTCTTGAAGATGAAACCAATAGAGGGTACTGGGATATGGTTTGGTCTGCACCAGGAATTACGAGAAAGAAAGGCGCATTTGATAGGATGGAAGGAACAAATTTTACGGTTATAGTGGAAACTGAGGATCAGATAGAGCTTTCATTCACCAGAATGTGGGATCCCTCTTTAGAGGGCACAGTTGTCCCTTTAAACATAGACAAAAGGTTCGTGTTGCTTCGTAACTCGTCGGGTTTCTACACTTACGCCATTTATGAACACTTGAAGGAATGGCCTGCTTTCAACTTGACCAACACCAGGACTGTGTTTAAGCTCAGAAAAGACAAGTTTCATTACATGGCAATATCAGACAGCAGGCAAAGACACATGCCCCTTCCCGATGATCGATCAGAAAAAAGAGGGCAAGCCCTGGCTTACCCTGAGGCGGTCTTGCTCGTCAATCCGGTCGAGCCAGAGTTCAAAGGAGAGGTGGATGACAAATATCAATATTCGATTGAGAACATACATAATCGGGTGCATGGATGGATAGCAAATGACTCACAGGTTGGATTTTGGCAGATTACTCCCAGTGAAGAGTTTAAATCTGGAGGTCCCTTCAAGCAGTGCCTTACTTCACATGTGGGACCCATCACCCTTGCCATCTTTCATAGTACCCATTACTCCGGAGAGGAACTGATATTACAATTTGGGTCCAATGAGCCATGGAAGAAAGTGTTTGGCCCAGTTTTTTTCTATCTTAATTCTTTGGTTGATGGAGCTAACCCTTTCCAGTGTCTATGGGAGGATGCTAAGCAACAGATGAACGATGAAGTTGAAAGTTGGCCATATGATTTTCCAGCTTCAAAGGACTTTCTGTCGCCCAAGCAACGAGGAACAGTTAGCGGCAGACTGTTGGTCCGCGAAAGGTATGTTACGGATGATAAAGACGCACCGGGAAATGGAACTCTGGTAGGATTGGCAGCTCCAGGAGTTGTTGGATCATGGCAGTTAGAATGCAAGGGTTACCAATTCTGGACCAAAGCAGACAATAATGGCTACTTCTCTATTCATGGCGTACGCCCAGGGACCTATAATCTTTATGCATGGGTTCCTGGTTTTATTGGTGATTACCGAGATGTTTCTGAAATTGTTGTAACTCCAGATGGTGATGTTGATGTGGGTACGCTTGTATATGAGCCTCCGCGAACTGGCCCAACTCTCTGGGAAATAGGCATCCCCGATCGAACTGCAGAAGAATTTTACGTCCCAGATCCTAATCCAAAGTACATTAACAAACTCTACGTCAACACTGACAGGTTTGTTGCATTTGTTGGTAATTATCTTCTTAATGATTGGAAAAGGTTTGTTATGAAACTTATGCATGTGCTTATTATGATCGACAGGTTTAGACAATATGGATTGTGGGAAAGATATGCAGAGTTATATCCTGACAATGACTTGGTTTACACAATTGGAGTTAGCGATTATAGAAACGATTTCTTCTTTGCTCAGGTTACCAGGAAGACAGGTAATAACACATACAAAGGATCAACATGGCAGATTAGGTTTAACCTAGACAATGTGGACAAGAACACTACCTACAAACTACGACTATCACTTGCAACAGCACATGTTTCTGAATTGCAAGTTCGGATCAATGACCCCGATACAGAGAATCCTCCTCTATTCACTACCGGACAGATTGGGAACGACAACACGATCGCGAGGCATGGAATTCATGGACTGTACAGACTATTCAATGTGGTCATTCCAAGCGCTCAGCTAGTCGAAGGGAACAATACCATATTTCTCACTCGAGGACTGAGTGTCAGCCCCTTTCAGGGAATCATGTATGATTATATTCGTTTAGAAGGCCCCCAATCTTCTAATGACAACAATAACATTGGATTTAGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

733

Amino Acids

83.45

Weight (kDa)

5.3

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	53 - 257	2.5e-93	Rhamnogalacturonate lyase family
fn3_3	PF14686	413 - 482	8e-25	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	499 - 716	2.4e-49	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g34130
malus_domestica	MD15G1389100.v1.1
prunus_persica	Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1 Prupe.1G537300_v2.0.a1
pyrus_communis	pycom15g34880 pycom15g34890
rosa_chinensis	RchiOBHm_Chr7g0233701
rosa_laevigata	RLG00000001241
rosa_multiflora	Rmu_co7977656.1_g000001 Rmu_sc0000556.1_g000027 Rmu_sc0005305.1_g000002 Rmu_sc0005305.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227080
rosa_rugosa	Rorug07G0282100 Rorug07G0282200 Rorug07G0282200
rosa_samantha	Rh7AG438500 Rh7BG411200 Rh7CG458100 Rh7DG427500
rosa_wichuraiana	Rw7G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	1200, 1483, 2003
AccIII	TCCGGA	1 cut(s)	962
AciI	CCGC	5 cut(s)	40, 725, 1182, 1198, 1481
AclWI	GGATC	7 cut(s)	435, 455, 468, 1285, 1544, 1834, 1940
AcoI	YGGCCR	2 cut(s)	115, 1121
AcsI	RAATTY	3 cut(s)	400, 1535, 2013
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	7 cut(s)	91, 329, 952, 1356, 1462, 1565, 2027
AfeI	AGCGCT	1 cut(s)	2056
AfiI	CCNNNNNNNGG	8 cut(s)	324, 456, 597, 724, 1238, 1487, 2119, 2120
AflIII	ACRYGT	2 cut(s)	916, 1909
AhdI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2105
AjnI	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1796
AluBI	AGCT	6 cut(s)	439, 613, 1058, 1139, 1262, 2062
AluI	AGCT	6 cut(s)	439, 613, 1058, 1139, 1262, 2062
AlwI	GGATC	7 cut(s)	435, 455, 468, 1285, 1544, 1834, 1940
Ama87I	CYCGRG	1 cut(s)	2094
Aor13HI	TCCGGA	1 cut(s)	962
Aor51HI	AGCGCT	1 cut(s)	2056
AoxI	GGCC	7 cut(s)	115, 175, 572, 1018, 1121, 1489, 2152
ApeKI	GCWGC	1 cut(s)	1259
ApoI	RAATTY	3 cut(s)	400, 1535, 2013
ArsI	GACNNNNNNTTYG	4 cut(s)	491, 523, 1566, 1598
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	377, 2057
AsuC2I	CCSGG	1 cut(s)	1233
AsuHPI	GGTGA	4 cut(s)	439, 922, 1415, 1457
AvaI	CYCGRG	1 cut(s)	2094
AvaII	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
AxyI	CCTNAGG	1 cut(s)	720
BaeGI	GKGCMC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	1452, 1485
BalI	TGGCCA	1 cut(s)	1123
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1808
BbvI	GCAGC	1 cut(s)	1271
BccI	CCATC	7 cut(s)	250, 382, 816, 935, 947, 1046, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	1508, 1542
BciT130I	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1798
BcnI	CCSGG	1 cut(s)	1233
BfaI	CTAG	2 cut(s)	1853, 2063
BfmI	CTRYAG	1 cut(s)	1527
BfoI	RGCGCY	1 cut(s)	2058
BisI	GCNGC	2 cut(s)	1183, 1260
BlpI	GCTNAGC	2 cut(s)	1089, 2058
BlsI	GCNGC	2 cut(s)	1184, 1261
Bme1390I	CCNGG	8 cut(s)	354, 598, 710, 1233, 1266, 1362, 1392, 1798
Bme18I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
BmeRI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2105
BmeT110I	CYCGRG	1 cut(s)	2094
BmiI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2155
BmrFI	CCNGG	8 cut(s)	354, 598, 710, 1233, 1266, 1362, 1392, 1798
BmrI	ACTGGG	3 cut(s)	340, 861, 1016
BmsI	GCATC	3 cut(s)	291, 1075, 1521
BmuI	ACTGGG	3 cut(s)	340, 861, 1016
BpiI	GAAGAC	1 cut(s)	1808
BpmI	CTGGAG	3 cut(s)	906, 1248, 1422
Bpu10I	CCTNAGC	1 cut(s)	1788
Bpu1102I	GCTNAGC	2 cut(s)	1089, 2058
BpuMI	CCSGG	1 cut(s)	1233
Bsa29I	ATCGAT	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	1554
BsaJI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BsaWI	WCCGGW	3 cut(s)	742, 962, 1973
Bsc4I	CCNNNNNNNGG	8 cut(s)	324, 456, 597, 724, 1238, 1487, 2119, 2120
Bse1I	ACTGG	6 cut(s)	268, 335, 867, 1022, 1069, 1492
Bse21I	CCTNAGG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	1554
BseAI	TCCGGA	1 cut(s)	962
BseBI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1798
BseCI	ATCGAT	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BseGI	GGATG	9 cut(s)	136, 144, 261, 393, 778, 827, 1090, 1222, 1512
BseJI	GATNNNNATC	1 cut(s)	1554
BseLI	CCNNNNNNNGG	8 cut(s)	324, 456, 597, 724, 1238, 1487, 2119, 2120
BseMII	CTCAG	6 cut(s)	414, 628, 711, 1802, 2072, 2093
BseNI	ACTGG	6 cut(s)	268, 335, 867, 1022, 1069, 1492
BseRI	GAGGAG	3 cut(s)	92, 95, 1950
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	1271
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	3 cut(s)	1200, 1483, 2003
Bsh1285I	CGRYCG	3 cut(s)	747, 1522, 2001
BshFI	GGCC	7 cut(s)	117, 177, 574, 1020, 1123, 1491, 2154
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	685
BsiEI	CGRYCG	3 cut(s)	747, 1522, 2001
BsiHKCI	CYCGRG	1 cut(s)	2094
BsiSI	CCGG	5 cut(s)	114, 743, 963, 1232, 1974
BsiWI	CGTACG	1 cut(s)	1354
BslFI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
BslI	CCNNNNNNNGG	8 cut(s)	324, 456, 597, 724, 1238, 1487, 2119, 2120
BsmFI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
BsmI	GAATGC	2 cut(s)	222, 1298
BsnI	GGCC	7 cut(s)	117, 177, 574, 1020, 1123, 1491, 2154
BsoBI	CYCGRG	1 cut(s)	2094
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp13I	TCCGGA	1 cut(s)	962
Bsp1407I	TGTACA	1 cut(s)	2025
Bsp1720I	GCTNAGC	2 cut(s)	1089, 2058
Bsp19I	CCATGG	1 cut(s)	1001
Bsp68I	TCGCGA	1 cut(s)	2003
BspACI	CCGC	5 cut(s)	40, 725, 1182, 1198, 1481
BspANI	GGCC	7 cut(s)	117, 177, 574, 1020, 1123, 1491, 2154
BspCNI	CTCAG	6 cut(s)	415, 627, 712, 1801, 2071, 2094
BspDI	ATCGAT	1 cut(s)	685
BspEI	TCCGGA	1 cut(s)	962
BspFNI	CGCG	3 cut(s)	1200, 1483, 2003
BspLI	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2155
BspMAI	CTGCAG	1 cut(s)	1531
BspPI	GGATC	7 cut(s)	435, 455, 468, 1285, 1544, 1834, 1940
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	2025
BsrI	ACTGG	6 cut(s)	268, 335, 867, 1022, 1069, 1492
BssECI	CCNNGG	4 cut(s)	708, 1001, 1360, 1361
BssT1I	CCWWGG	1 cut(s)	1001
Bst2UI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1798
Bst4CI	ACNGT	7 cut(s)	46, 409, 481, 604, 1177, 1191, 2025
Bst6I	CTCTTC	2 cut(s)	113, 867
BstAUI	TGTACA	1 cut(s)	2025
BstC8I	GCNNGC	4 cut(s)	179, 576, 656, 705
BstDEI	CTNAG	7 cut(s)	423, 614, 720, 1089, 1788, 2058, 2102
BstDSI	CCRYGG	1 cut(s)	1001
BstEII	GGTNACC	2 cut(s)	1301, 1792
BstF5I	GGATG	9 cut(s)	136, 144, 261, 393, 778, 827, 1090, 1222, 1512
BstFNI	CGCG	3 cut(s)	1200, 1483, 2003
BstH2I	RGCGCY	1 cut(s)	2058
BstHHI	GCGC	2 cut(s)	377, 2057
BstMCI	CGRYCG	3 cut(s)	747, 1522, 2001
BstNI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1798
BstNSI	RCATGY	4 cut(s)	670, 920, 1664, 1913
BstPI	GGTNACC	2 cut(s)	1301, 1792
BstSCI	CCNGG	8 cut(s)	352, 596, 708, 1231, 1264, 1360, 1390, 1796
BstSFI	CTRYAG	1 cut(s)	1527
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	3 cut(s)	1200, 1483, 2003
BstV1I	GCAGC	1 cut(s)	1271
BstV2I	GAAGAC	1 cut(s)	1808
BstX2I	RGATCY	2 cut(s)	460, 1549
BstXI	CCANNNNNNTGG	1 cut(s)	1500
BstYI	RGATCY	2 cut(s)	460, 1549
Bsu15I	ATCGAT	1 cut(s)	685
Bsu36I	CCTNAGG	1 cut(s)	720
BsuRI	GGCC	7 cut(s)	117, 177, 574, 1020, 1123, 1491, 2154
BsuTUI	ATCGAT	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	1001
BtsCI	GGATG	9 cut(s)	136, 144, 261, 393, 778, 827, 1090, 1222, 1512
BtsI	GCAGTG	2 cut(s)	153, 908
BtsIMutI	CAGTG	5 cut(s)	153, 874, 908, 1076, 1587
BtuMI	TCGCGA	1 cut(s)	2003
Cac8I	GCNNGC	4 cut(s)	179, 576, 656, 705
CfoI	GCGC	2 cut(s)	377, 2057
ClaI	ATCGAT	1 cut(s)	685
CseI	GACGC	1 cut(s)	1235
Csp6I	GTAC	7 cut(s)	90, 328, 951, 1355, 1461, 1564, 2026
CviQI	GTAC	7 cut(s)	90, 328, 951, 1355, 1461, 1564, 2026
DdeI	CTNAG	7 cut(s)	423, 614, 720, 1089, 1788, 2058, 2102
DraI	TTTAAA	2 cut(s)	492, 880
DriI	GACNNNNNGTC	3 cut(s)	1153, 1193, 2105
EaeI	YGGCCR	2 cut(s)	115, 1121
Eam1104I	CTCTTC	2 cut(s)	113, 867
Eam1105I	GACNNNNNGTC	3 cut(s)	1153, 1193, 2105
EarI	CTCTTC	2 cut(s)	113, 867
Eco130I	CCWWGG	1 cut(s)	1001
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
Eco47III	AGCGCT	1 cut(s)	2056
Eco57I	CTGAAG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	720
Eco88I	CYCGRG	1 cut(s)	2094
Eco91I	GGTNACC	2 cut(s)	1301, 1792
EcoO109I	RGGNCCY	4 cut(s)	890, 923, 1365, 2153
EcoO65I	GGTNACC	2 cut(s)	1301, 1792
EcoRI	GAATTC	1 cut(s)	2013
EcoRII	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1796
EcoT14I	CCWWGG	1 cut(s)	1001
EcoT22I	ATGCAT	2 cut(s)	1384, 1662
ErhI	CCWWGG	1 cut(s)	1001
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	5 cut(s)	470, 876, 936, 1378, 1529
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	1183, 1260
FokI	GGATG	9 cut(s)	131, 143, 268, 400, 785, 834, 1097, 1229, 1499
Fsp4HI	GCNGC	2 cut(s)	1183, 1260
FspBI	CTAG	2 cut(s)	1853, 2063
GlaI	GCGC	2 cut(s)	376, 2056
GluI	GCNGC	2 cut(s)	1183, 1260
GsuI	CTGGAG	3 cut(s)	906, 1248, 1422
HaeII	RGCGCY	1 cut(s)	2058
HaeIII	GGCC	7 cut(s)	117, 177, 574, 1020, 1123, 1491, 2154
HapII	CCGG	5 cut(s)	114, 743, 963, 1232, 1974
HgaI	GACGC	1 cut(s)	1235
HhaI	GCGC	2 cut(s)	377, 2057
Hin6I	GCGC	2 cut(s)	375, 2055
HinP1I	GCGC	2 cut(s)	375, 2055
HincII	GTYRAC	2 cut(s)	6, 1585
HindII	GTYRAC	2 cut(s)	6, 1585
HinfI	GANTC	4 cut(s)	97, 836, 1954, 2124
HpaII	CCGG	5 cut(s)	114, 743, 963, 1232, 1974
HphI	GGTGA	4 cut(s)	439, 922, 1415, 1457
Hpy166II	GTNNAC	4 cut(s)	6, 1585, 1744, 1864
Hpy188I	TCNGA	8 cut(s)	163, 432, 617, 649, 691, 1423, 1918, 1932
Hpy188III	TCNNGA	9 cut(s)	128, 305, 677, 885, 963, 1312, 1439, 1727, 2002
Hpy8I	GTNNAC	4 cut(s)	6, 1585, 1744, 1864
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	6 cut(s)	386, 559, 683, 904, 2063, 2144
HpyCH4III	ACNGT	7 cut(s)	46, 409, 481, 604, 1177, 1191, 2025
HpyCH4IV	ACGT	2 cut(s)	1542, 1581
HpyF3I	CTNAG	7 cut(s)	423, 614, 720, 1089, 1788, 2058, 2102
HpySE526I	ACGT	2 cut(s)	1542, 1581
HspAI	GCGC	2 cut(s)	375, 2055
KflI	GGGWCCC	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	962
KpnI	GGTACC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	1055, 1267
Lsp1109I	GCAGC	1 cut(s)	1271
LweI	GCATC	3 cut(s)	291, 1075, 1521
MaeI	CTAG	2 cut(s)	1853, 2063
MaeII	ACGT	2 cut(s)	1542, 1581
MaeIII	GTNAC	6 cut(s)	259, 521, 1210, 1301, 1432, 1792
MfeI	CAATTG	1 cut(s)	1749
MflI	RGATCY	2 cut(s)	460, 1549
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	1 cut(s)	1123
MluNI	TGGCCA	1 cut(s)	1123
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	826, 1255
Mox20I	TGGCCA	1 cut(s)	1123
Mph1103I	ATGCAT	2 cut(s)	1384, 1662
MroI	TCCGGA	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	1123
MseI	TTAA	7 cut(s)	491, 609, 879, 1038, 1569, 1626, 1848
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	1123
MspI	CCGG	5 cut(s)	114, 743, 963, 1232, 1974
MspR9I	CCNGG	8 cut(s)	354, 598, 710, 1233, 1266, 1362, 1392, 1798
MunI	CAATTG	1 cut(s)	1749
Mva1269I	GAATGC	2 cut(s)	222, 1298
MvaI	CCWGG	7 cut(s)	354, 598, 710, 1266, 1362, 1392, 1798
MvnI	CGCG	3 cut(s)	1200, 1483, 2003
NciI	CCSGG	1 cut(s)	1233
NcoI	CCATGG	1 cut(s)	1001
NdeI	CATATG	1 cut(s)	1126
NlaIV	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2155
NruI	TCGCGA	1 cut(s)	2003
NsiI	ATGCAT	2 cut(s)	1384, 1662
NspI	RCATGY	4 cut(s)	670, 920, 1664, 1913
PaeR7I	CTCGAG	1 cut(s)	2094
PasI	CCCWGGG	1 cut(s)	1361
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	2 cut(s)	916, 1909
PctI	GAATGC	2 cut(s)	222, 1298
PfeI	GAWTC	3 cut(s)	97, 1954, 2124
Pfl23II	CGTACG	1 cut(s)	1354
PflMI	CCANNNNNTGG	1 cut(s)	456
PfoI	TCCNGGA	1 cut(s)	1264
PkrI	GCNGC	2 cut(s)	1184, 1261
Ple19I	CGATCG	2 cut(s)	1522, 2001
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PpuMI	RGGWCCY	3 cut(s)	890, 923, 1365
PscI	ACATGT	2 cut(s)	916, 1909
Psp5II	RGGWCCY	3 cut(s)	890, 923, 1365
Psp6I	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1796
PspEI	GGTNACC	2 cut(s)	1301, 1792
PspGI	CCWGG	7 cut(s)	352, 596, 708, 1264, 1360, 1390, 1796
PspLI	CGTACG	1 cut(s)	1354
PspN4I	GGNNCC	9 cut(s)	91, 462, 892, 924, 925, 991, 1366, 1389, 2155
PspPPI	RGGWCCY	3 cut(s)	890, 923, 1365
PspXI	VCTCGAGB	1 cut(s)	2094
PsrI	GAACNNNNNNTAC	6 cut(s)	388, 420, 963, 995, 1862, 1894
PstI	CTGCAG	1 cut(s)	1531
PsuI	RGATCY	2 cut(s)	460, 1549
PvuI	CGATCG	2 cut(s)	1522, 2001
RruI	TCGCGA	1 cut(s)	2003
RsaI	GTAC	7 cut(s)	91, 329, 952, 1356, 1462, 1565, 2027
RsaNI	GTAC	7 cut(s)	90, 328, 951, 1355, 1461, 1564, 2026
RseI	CAYNNNNRTG	1 cut(s)	452
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	7 cut(s)	491, 609, 879, 1038, 1569, 1626, 1848
SatI	GCNGC	2 cut(s)	1183, 1260
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	8 cut(s)	354, 598, 710, 1233, 1266, 1362, 1392, 1798
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	3 cut(s)	291, 1075, 1521
SfcI	CTRYAG	1 cut(s)	1527
Sfr274I	CTCGAG	1 cut(s)	2094
SinI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
SlaI	CTCGAG	1 cut(s)	2094
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	2094
SmoI	CTYRAG	1 cut(s)	2094
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	5 cut(s)	40, 725, 1182, 1198, 1481
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	2 cut(s)	1853, 2063
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	8 cut(s)	352, 596, 708, 1231, 1264, 1360, 1390, 1796
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	7 cut(s)	46, 409, 481, 604, 1177, 1191, 2025
TaiI	ACGT	2 cut(s)	1545, 1584
TaqI	TCGA	9 cut(s)	5, 285, 685, 747, 791, 1522, 1677, 2067, 2095
TatI	WGTACW	2 cut(s)	1563, 2025
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	3 cut(s)	97, 1954, 2124
Tru1I	TTAA	7 cut(s)	491, 609, 879, 1038, 1569, 1626, 1848
Tru9I	TTAA	7 cut(s)	491, 609, 879, 1038, 1569, 1626, 1848
TscAI	CASTG	5 cut(s)	160, 874, 908, 1076, 1594
TseI	GCWGC	1 cut(s)	1259
TspGWI	ACGGA	1 cut(s)	1229
TspRI	CASTG	5 cut(s)	160, 874, 908, 1076, 1594
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	7 cut(s)	32, 890, 923, 990, 1195, 1314, 1365
XapI	RAATTY	3 cut(s)	400, 1535, 2013
XceI	RCATGY	4 cut(s)	670, 920, 1664, 1913
XhoI	CTCGAG	1 cut(s)	2094
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	1853, 2063
Zsp2I	ATGCAT	2 cut(s)	1384, 1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.