Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Forward (+)

35391496 .. 35392741

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCCAAGGATGTGCGGACGCTAATTATTTGCTTCTCGGTAGGTTTAGCAATCCTGCTTGCGTCCCTCACATGCTTCTTGTTCTTAAAGAAGGGAGAAAAGGACGAAGACCGTTCATTAAAGGAGGAATCTTGGGATGTGAAGTCTTTCCATGTGATGAGCTTCACTGAGGGTGAGATTCTTGATTCCATTAAGCAAGAGAATCTTATCGGAAAAGGAGGTTCCGGAAATGTTTATAGAGTTGTACTTGCGAATGGCAAAGAACTCGCCGTAAAACATATATGGAATACCAATCCAAGTGGCAGGAAAAGGTTCAAGAGCACGAGCCCAATGCTTGCAAAACGAGGTGGGAAGTCCAAGGAATTCGACGCTGAGGTGCAGACGTTGAGCTCAATTAGGCATGTGAATGTGGTGAAGTTGTACTGCAGCATTACCAGCGAGGATTCGAGCTTGTTGGTGTATGAGTACATGCCGAATGGAAGCTTGTGGGATCGGCTTCATACATGCCAGAAGATGAAGCTTGATTGGGAGACAAGGCATGAGATAGCAGTGGGAGCAGCCAAAGGGTTGGAGTATTTACATCATGGCTTGGAGAGGCTGGTGATACACAGAGATGTCAAGTCTAGTAACATTTTATTGGATGAGTTTTTGAAGCCTAGAATTGCGGATTTTGGGCTTGCCAAGATTGTTCAGGCCACTGCAGGCAAGGACTCTACTCACGTTATTGCCGGAACACACGGCTATATTGCTCCTGAATATGGATACACTTACAAAGTGAACGAGAAGAGTGATGTGTACAGCTTCGGAGTGGTACTAATGGAGCTAGTGACGGGGAAAAGGCCGATAGAGCCAGAGTTCGGGGAGAACAAGGACATAGTGAGCTGGGTAAGCAGCATGCTCAAGAGTAGAGAGAGCATATTAAGTATGGTGGACTCATTTATTCCAGAGGTGTACAAGGAAGAGGCTATCAAGGTGTTAAGAATTGCAGTTCTGTGCACGGCTAGGTTGCCGGAGCTAAGACCCTCCATGAGAAGTGTGGTTCAAATGCTAGAAGAGGCTCACGAGACGTTTAAATTGCTCAAAATTGTTATCGGCAAGGATGATGCCGCTGGTAATAAGAAAATGGAACTAGCGAAGGGTATAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

384

Amino Acids

43.0

Weight (kDa)

8.38

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	3 cut(s)	16, 665, 1107
AclWI	GGATC	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	6 cut(s)	246, 422, 467, 797, 813, 953
AfiI	CCNNNNNNNGG	2 cut(s)	758, 857
AgsI	TTSAA	3 cut(s)	316, 652, 1043
AluBI	AGCT	9 cut(s)	162, 390, 450, 483, 520, 801, 823, 882, 1015
AluI	AGCT	9 cut(s)	162, 390, 450, 483, 520, 801, 823, 882, 1015
Alw21I	GWGCWC	3 cut(s)	323, 392, 998
Alw26I	GTCTC	2 cut(s)	524, 1058
Alw44I	GTGCAC	1 cut(s)	994
AlwI	GGATC	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	693, 839
ApaLI	GTGCAC	1 cut(s)	994
ApeKI	GCWGC	3 cut(s)	426, 557, 891
ApoI	RAATTY	1 cut(s)	362
Asp700I	GAANNNNTTC	2 cut(s)	146, 311
AsuHPI	GGTGA	3 cut(s)	185, 424, 613
BaeGI	GKGCMC	1 cut(s)	998
BanII	GRGCYC	2 cut(s)	329, 392
BauI	CACGAG	2 cut(s)	322, 1061
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	3 cut(s)	323, 392, 998
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	438, 569, 903
BceAI	ACGGC	3 cut(s)	254, 754, 1014
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 313, 347
BciVI	GTATCC	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	524, 1058
BfaI	CTAG	6 cut(s)	624, 657, 824, 1002, 1049, 1130
BfmI	CTRYAG	2 cut(s)	424, 699
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	4 cut(s)	427, 558, 892, 1107
BlsI	GCNGC	4 cut(s)	428, 559, 893, 1108
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	1093
BpiI	GAAGAC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	6, 357
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	758, 857
BseAI	TCCGGA	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	6, 357
BseGI	GGATG	4 cut(s)	16, 142, 646, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	758, 857
BseMII	CTCAG	2 cut(s)	159, 363
BseSI	GKGCMC	1 cut(s)	998
BseXI	GCAGC	3 cut(s)	438, 569, 903
BseYI	CCCAGC	1 cut(s)	882
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	695, 841
BsiHKAI	GWGCWC	3 cut(s)	323, 392, 998
BsiSI	CCGG	3 cut(s)	225, 729, 1010
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	758, 857
BsmAI	GTCTC	2 cut(s)	524, 1058
BsmBI	CGTCTC	1 cut(s)	1058
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	695, 841
Bsp1286I	GDGCHC	4 cut(s)	323, 329, 392, 998
Bsp13I	TCCGGA	1 cut(s)	224
Bsp1407I	TGTACA	2 cut(s)	795, 951
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	3 cut(s)	16, 665, 1107
BspANI	GGCC	2 cut(s)	695, 841
BspCNI	CTCAG	2 cut(s)	160, 364
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	2 cut(s)	428, 703
BspPI	GGATC	1 cut(s)	498
BsrGI	TGTACA	2 cut(s)	795, 951
BssECI	CCNNGG	2 cut(s)	6, 357
BssMI	GATC	1 cut(s)	490
BssSI	CACGAG	2 cut(s)	322, 1061
BssT1I	CCWWGG	2 cut(s)	6, 357
Bst2BI	CACGAG	2 cut(s)	322, 1061
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	779, 954, 1047
BstAUI	TGTACA	2 cut(s)	795, 951
BstC8I	GCNNGC	5 cut(s)	60, 336, 678, 703, 896
BstDEI	CTNAG	3 cut(s)	168, 372, 1016
BstF5I	GGATG	4 cut(s)	16, 142, 646, 1105
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	524, 1058
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 554, 847, 888
BstNSI	RCATGY	5 cut(s)	75, 404, 472, 507, 898
BstSFI	CTRYAG	2 cut(s)	424, 699
BstSLI	GKGCMC	1 cut(s)	998
BstV1I	GCAGC	3 cut(s)	438, 569, 903
BstV2I	GAAGAC	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	695, 841
BtsCI	GGATG	4 cut(s)	16, 142, 646, 1105
BtsI	GCAGTG	2 cut(s)	555, 696
BtsIMutI	CAGTG	3 cut(s)	165, 555, 696
Cac8I	GCNNGC	5 cut(s)	60, 336, 678, 703, 896
CseI	GACGC	3 cut(s)	28, 51, 377
Csp6I	GTAC	6 cut(s)	245, 421, 466, 796, 812, 952
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	9 cut(s)	72, 152, 401, 469, 504, 539, 584, 895, 1027
CviQI	GTAC	6 cut(s)	245, 421, 466, 796, 812, 952
DdeI	CTNAG	3 cut(s)	168, 372, 1016
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
DraI	TTTAAA	1 cut(s)	1072
Eam1104I	CTCTTC	3 cut(s)	779, 954, 1047
EarI	CTCTTC	3 cut(s)	779, 954, 1047
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	6, 357
Eco24I	GRGCYC	2 cut(s)	329, 392
Eco53kI	GAGCTC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	6, 357
EcoT38I	GRGCYC	2 cut(s)	329, 392
ErhI	CCWWGG	2 cut(s)	6, 357
Esp3I	CGTCTC	1 cut(s)	1058
FaeI	CATG	9 cut(s)	75, 155, 404, 472, 507, 542, 587, 898, 1030
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	9 cut(s)	71, 151, 400, 468, 503, 538, 583, 894, 1026
Fnu4HI	GCNGC	4 cut(s)	427, 558, 892, 1107
FokI	GGATG	4 cut(s)	23, 149, 653, 1112
FriOI	GRGCYC	2 cut(s)	329, 392
Fsp4HI	GCNGC	4 cut(s)	427, 558, 892, 1107
FspBI	CTAG	6 cut(s)	624, 657, 824, 1002, 1049, 1130
GluI	GCNGC	4 cut(s)	427, 558, 892, 1107
GsaI	CCCAGC	1 cut(s)	886
HaeIII	GGCC	2 cut(s)	695, 841
HapII	CCGG	3 cut(s)	225, 729, 1010
HgaI	GACGC	3 cut(s)	28, 51, 377
Hin1II	CATG	9 cut(s)	75, 155, 404, 472, 507, 542, 587, 898, 1030
HindIII	AAGCTT	2 cut(s)	481, 518
HinfI	GANTC	7 cut(s)	128, 178, 185, 202, 443, 710, 932
HpaII	CCGG	3 cut(s)	225, 729, 1010
HphI	GGTGA	3 cut(s)	185, 424, 613
Hpy166II	GTNNAC	5 cut(s)	778, 796, 931, 952, 996
Hpy188I	TCNGA	2 cut(s)	212, 806
Hpy188III	TCNNGA	7 cut(s)	182, 225, 316, 752, 901, 944, 1061
Hpy8I	GTNNAC	5 cut(s)	778, 796, 931, 952, 996
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	85, 1129
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	3 cut(s)	383, 720, 1067
HpyCH4V	TGCA	6 cut(s)	338, 379, 426, 701, 986, 996
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 554, 847, 888
HpyF3I	CTNAG	3 cut(s)	168, 372, 1016
HpySE526I	ACGT	3 cut(s)	383, 720, 1067
Hsp92II	CATG	9 cut(s)	75, 155, 404, 472, 507, 542, 587, 898, 1030
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	4 cut(s)	554, 754, 820, 1012
Lsp1109I	GCAGC	3 cut(s)	438, 569, 903
LweI	GCATC	1 cut(s)	1093
MaeI	CTAG	6 cut(s)	624, 657, 824, 1002, 1049, 1130
MaeII	ACGT	3 cut(s)	383, 720, 1067
MaeIII	GTNAC	2 cut(s)	626, 826
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	5 cut(s)	119, 523, 796, 971, 1064
MhlI	GDGCHC	4 cut(s)	323, 329, 392, 998
MluCI	AATT	8 cut(s)	24, 362, 393, 660, 981, 1073, 1083, 1147
MlyI	GAGTC	2 cut(s)	704, 926
MmeI	TCCRAC	1 cut(s)	549
MroI	TCCGGA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	146, 311
MseI	TTAA	6 cut(s)	86, 119, 192, 920, 977, 1071
MslI	CAYNNNNRTG	2 cut(s)	405, 612
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	225, 729, 1010
MwoI	GCNNNNNNNGC	4 cut(s)	435, 554, 847, 888
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	9 cut(s)	75, 155, 404, 472, 507, 542, 587, 898, 1030
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	5 cut(s)	75, 404, 472, 507, 898
PaeI	GCATGC	1 cut(s)	898
PdmI	GAANNNNTTC	2 cut(s)	146, 311
PfeI	GAWTC	5 cut(s)	128, 178, 185, 202, 443
PkrI	GCNGC	4 cut(s)	428, 559, 893, 1108
PleI	GAGTC	2 cut(s)	704, 926
PpsI	GAGTC	2 cut(s)	704, 926
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	882
PspN4I	GGNNCC	1 cut(s)	223
PstI	CTGCAG	2 cut(s)	428, 703
RsaI	GTAC	6 cut(s)	246, 422, 467, 797, 813, 953
RsaNI	GTAC	6 cut(s)	245, 421, 466, 796, 812, 952
RseI	CAYNNNNRTG	2 cut(s)	405, 612
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	6 cut(s)	86, 119, 192, 920, 977, 1071
SatI	GCNGC	4 cut(s)	427, 558, 892, 1107
Sau3AI	GATC	1 cut(s)	490
SchI	GAGTC	2 cut(s)	704, 926
SduI	GDGCHC	4 cut(s)	323, 329, 392, 998
SfaNI	GCATC	1 cut(s)	1093
SfcI	CTRYAG	2 cut(s)	424, 699
SmiMI	CAYNNNNRTG	2 cut(s)	405, 612
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	8 cut(s)	24, 362, 393, 660, 981, 1073, 1083, 1147
SsiI	CCGC	3 cut(s)	16, 665, 1107
SspMI	CTAG	6 cut(s)	624, 657, 824, 1002, 1049, 1130
SstI	GAGCTC	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	6, 357
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	3 cut(s)	386, 723, 1070
TaqI	TCGA	2 cut(s)	366, 446
TasI	AATT	8 cut(s)	24, 362, 393, 660, 981, 1073, 1083, 1147
TatI	WGTACW	5 cut(s)	244, 420, 465, 795, 951
TauI	GCSGC	1 cut(s)	1109
TfiI	GAWTC	5 cut(s)	128, 178, 185, 202, 443
Tru1I	TTAA	6 cut(s)	86, 119, 192, 920, 977, 1071
Tru9I	TTAA	6 cut(s)	86, 119, 192, 920, 977, 1071
TscAI	CASTG	3 cut(s)	172, 555, 703
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	426, 557, 891
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	3 cut(s)	105, 488, 530
TspRI	CASTG	3 cut(s)	172, 555, 703
VneI	GTGCAC	1 cut(s)	994
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	5 cut(s)	75, 404, 472, 507, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1033
XmnI	GAANNNNTTC	2 cut(s)	146, 311
XspI	CTAG	6 cut(s)	624, 657, 824, 1002, 1049, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.