Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Reverse (-)

56575965 .. 56579420

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGCCATTACCCAAAAACCACCACCTCCATCTCTACCTCCTCTTCTTCCTCTTCCTCCTCTCCAACGCCGCCGCAGCCGACGAGCTTCAAATCCTACTAAAACTCAAATCCTCCCTCCAGGACTCGAACTCCCAACTCTTCGCCACATGGGACTCCACCGCCAATTCGTTTTGCAAATTCACCGGAATCACCTGCAACGACGTCGGTTCGGTTCGAGAAATCGAACTTTCGAACCAGAAGCTGTCGGGGTCTCTTCCGCTGGACTCCATATGCCAACTTCCCTCATTAGAAAAGCTCGCTTTCGGGTCCAATTTCCTGCACGGTACAATCACGGAGGACTTGAGAAACTGTACGAAGCTGAAATACCTGGATTTGGGGAAAAACTTGTTCGCGGGTTCATTCCCTGACATATCTTCCTTGTCCCAACTGGAGCATCTTCATCTGAACGGCAGCTGGTTTTCCGGGATTTTCCCGTGGACTTCCCTCACCAACATGACTGGTCTGATTCGTTTGAGCTTGGGTGACAACCCGTTTGATCCCAGCCCGTTTCCAAAGGAAGTTGAAAATCTTAAAAAGCTCGAGTGGCTCTACTTGGCAAACTGCAGCATCCAAGGAACAATACCAAGTGAAATCGGGAACTTGGTCGAGCTTATCAACCTGGAGTTGTCCGATAACAACATGACCGGAGAAATTCCGGTCGAGATTGGACAGCTCACCAAGCTCTGGCAGCTGGAGCTCTACATCAACAGGTTCACCGGAATGCTTCCTTTCGGGCTAAGAAACCTCACCATTCTCGAGAACTTCGACGCCTCTGAGAATTTTCTGGAAGGCGATTTGAACGAGTTGAGGTTTCTGACCAACTTGGTTTCTCTGCAGCTGTATGACAACAATTTTTCCGGCGAAGTACCGGAAGAGTTCGGCGAATTAAACAAGCTTGTGAATCTGTCTTTGTACGGTAACAAGCTGACCGGTCCTCTGCCTCAGAAATTGGGTTCTTGGTCGGAGATGGGCTTCATCGACGTGTCGGAGAACTTCTTGACCGGGACTATTCCGCCGGACATGTGCAACAAAGGGACGATGAAGCAGCTGCTCATGCTTCAGAACAAATTAACTGGCGAAATTCCGGCAAACTACGCCAAGTGCACGACGTTGACCCGGTTCAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCAGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGGCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGTGAATTACCGGACGAGCTTTCGAAGTCAACTTCGTTGGTTTCGGTTATGTTGAATAACAATCAGTTTTCCGGTAAGATTCCGGCGAAGATAGGGGACTTGAAGCAATTGGGTACTCTGCATTTAGAGAGCAACTTGTTGTCTTCTTCGATTCCCAAGTCATTGGGAAGCTGTAGTTTCCTGAGTGACTTGAACACGGCGAACAACTCGCTTTCCGGTGAAATCCCATCATCTTTGGGCTCTTTGCCGACCTTGAATTCTCTGGATTTGTCTCACAACCAACTCTCCGGTAAAATCCCGGAAAGTCTAGCATCTCTGAGACTAAGCATGCTTGATCTTTCGCACAACAGACTGACCGGTGCCGTACCGGAATCTCTCTCGATTGCAGCCTACAACGGCAGCCTTTCCGGTAACCCGGGTCTCTGCAGCATGGACATCACCTACTTCCCACGGTGCTCGCCGAAAAAGGAAATGTCCGACGATGTCAGGACACTCATTATTTGCTTCTCAGTGGGTACAGCAATATTGTTTGTTTCACTCATTTGCTTCTCGTTCTTAAAGAGGAAGGAGAAAGATCAAGACCGTTCATTGAAGGAAGAATCTTGGGATGTAAAGTCTTTCCATGTAATAACCTTCAGTGAGGATGAGATTCTTGATTCCATTACTCAAGAGAATCTAATTGGAAAAGGAGGTTCTGGAAATGTCTACAAAGTGTCACTAGCCAATGGCAAAGAAGTCGCCGTGAAGCACATATGGAACACTGATCCAAGCGGCCGGAAAATGTTCAAGAGCACCACACCGATGCTCGGGAGACGGGGCAGTGGTAGTTCGAAATCGAAGGAATTTGATGCTGAGGTGCAGACGTTGAGCTCAATAAGGCATGTGAATGTGGTGAAGTTGTTCTGCAGCATTACTAGTGAGGACTCGAGCCTTTTGGTCTACGAGTACTTACCGAACGGAAGCTTGTGGGATCGGCTGCACACGTGTGAGAAGATGAAGCTTGATTGGGACGCAAGGTATGAGATTGCAGTCGGAGCAGCCAAAGGGTTGGAGTATCTGCACCATGGCTGTGAGAGGCTAGTGATTCATAGAGATGTCAAGTCGAGTAACATTTTGTTAGATGAGTTTTTGAAGCCCCGGATCGCGGATTTTGGGCTCGCCAAGATGGTTCAGACTAATGCAATTAAGGACTCGTCTCATGTTGTTGCTGGAACACACGGTTACATAGCTCCTGAATATGGTTACACCTACAAGGTGAATGAGAAGAGCGATGTGTATAGCTTTGGTGTAGTACTAATGGAGCTAGTGACCGGGAAAAAGCCGATAGATCCATCCTTTGGGGACAACAAGGACATAGTGAACTGGATATGTGGCAACCTGAAGAGTAGAGAGAGCGTGTTAGGTGTGGTGGACTCGTACGTTCCTGAGGCCTATAGGGAAGAGGCTATCAAGGTATTGAGAATTGCAATTCTATGCACAGCTAGGCTTCCAGAGCTAAGACCTTCCATGAGAAGTGTCGTTCAAATGCTTGAAGAAGCTCACGAGCCAATGAAATTGCTGGACATTGTTATCAGCAAAGATGGTTCTAGTAAGAAAATGGAAGTACTTAAAGGAACAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

984

Amino Acids

108.76

Weight (kDa)

5.69

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 66	2.6e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	185 - 319	1.8e-12	Leucine-rich repeat region
LRR_8	PF13855	506 - 561	2.3e-06	Leucine rich repeat
Pkinase	PF00069	666 - 951	1.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	666 - 953	2.5e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	1 cut(s)	1299
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	1688
AccB7I	CCANNNNNTGG	2 cut(s)	723, 2666
AccI	GTMKAC	2 cut(s)	2034, 2268
AccII	CGCG	2 cut(s)	392, 2474
AciI	CCGC	8 cut(s)	69, 72, 159, 257, 392, 1052, 2100, 2474
AclWI	GGATC	5 cut(s)	530, 2087, 2307, 2477, 2651
AcoI	YGGCCR	1 cut(s)	2101
AcsI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
AcuI	CTGAAG	3 cut(s)	1082, 1948, 2729
AcvI	CACGTG	1 cut(s)	2313
AcyI	GRCGYC	2 cut(s)	201, 807
AfiI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
AflIII	ACRYGT	4 cut(s)	1020, 1059, 2310, 2312
AgeI	ACCGGT	2 cut(s)	968, 1685
AhlI	ACTAGT	1 cut(s)	2243
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	3 cut(s)	117, 366, 657
AleI	CACNNNNGTG	1 cut(s)	2313
Alw21I	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
Alw26I	GTCTC	6 cut(s)	255, 1605, 1642, 1754, 2134, 2529
Alw44I	GTGCAC	1 cut(s)	1141
AlwI	GGATC	5 cut(s)	530, 2087, 2307, 2477, 2651
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
AoxI	GGCC	3 cut(s)	1259, 2101, 2757
ApaLI	GTGCAC	1 cut(s)	1141
ApoI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AsiGI	ACCGGT	2 cut(s)	968, 1685
Asp700I	GAANNNNTTC	2 cut(s)	2111, 2228
AspLEI	GCGC	1 cut(s)	1300
AspS9I	GGNCC	3 cut(s)	306, 971, 1259
AsuC2I	CCSGG	8 cut(s)	463, 1042, 1156, 1628, 1745, 1746, 2467, 2641
AsuII	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
AvaI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
AvaII	GGWCC	2 cut(s)	306, 971
AxyI	CCTNAGG	1 cut(s)	2754
BaeGI	GKGCMC	1 cut(s)	1145
BanI	GGYRCC	1 cut(s)	1688
BanII	GRGCYC	4 cut(s)	738, 1571, 2201, 2487
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BauI	CACGAG	1 cut(s)	2870
BbrPI	CACGTG	1 cut(s)	2313
BbsI	GAAGAC	1 cut(s)	1464
Bbv12I	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
BbvCI	CCTCAGC	1 cut(s)	2181
BccI	CCATC	6 cut(s)	36, 1000, 1564, 2488, 2668, 2903
BceAI	ACGGC	5 cut(s)	463, 1542, 1676, 1741, 2054
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 2047, 2081
BciT130I	CCWGG	3 cut(s)	119, 368, 659
BcnI	CCSGG	8 cut(s)	463, 1042, 1156, 1628, 1745, 1746, 2467, 2641
BcoDI	GTCTC	6 cut(s)	255, 1605, 1642, 1754, 2134, 2529
BcuI	ACTAGT	1 cut(s)	2243
BfaI	CTAG	7 cut(s)	1637, 2048, 2244, 2408, 2633, 2811, 2916
BfmI	CTRYAG	6 cut(s)	601, 872, 1501, 1753, 2233, 2761
BfuAI	ACCTGC	1 cut(s)	200
BmcAI	AGTACT	3 cut(s)	2276, 2622, 2934
Bme18I	GGWCC	2 cut(s)	306, 971
BmeT110I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	3 cut(s)	306, 971, 1259
BmiI	GGNNCC	3 cut(s)	307, 1194, 1690
BmsI	GCATC	5 cut(s)	442, 615, 1649, 2121, 2167
BpiI	GAAGAC	1 cut(s)	1464
BpmI	CTGGAG	4 cut(s)	101, 449, 680, 752
Bpu10I	CCTNAGC	1 cut(s)	2181
Bpu14I	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
BpuEI	CTTGAG	2 cut(s)	361, 1980
BpuMI	CCSGG	8 cut(s)	463, 1042, 1156, 1628, 1745, 1746, 2467, 2641
BsaAI	YACGTR	1 cut(s)	2313
BsaHI	GRCGYC	2 cut(s)	201, 807
BsaI	GGTCTC	2 cut(s)	255, 1754
BsaJI	CCNNGG	6 cut(s)	473, 610, 1744, 1778, 2392, 2465
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 143, 1160, 1166, 1190, 1196, 1598, 1628
Bsc4I	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
Bse118I	RCCGGY	2 cut(s)	968, 1685
Bse1I	ACTGG	4 cut(s)	432, 502, 1117, 2696
Bse21I	CCTNAGG	1 cut(s)	2754
BseBI	CCWGG	3 cut(s)	119, 368, 659
BseDI	CCNNGG	6 cut(s)	473, 610, 1744, 1778, 2392, 2465
BseGI	GGATG	4 cut(s)	606, 1942, 1978, 2660
BseLI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
BseMII	CTCAG	7 cut(s)	804, 995, 1502, 1637, 1851, 2172, 2745
BseNI	ACTGG	4 cut(s)	432, 502, 1117, 2696
BseRI	GAGGAG	2 cut(s)	29, 47
BseSI	GKGCMC	1 cut(s)	1145
BseX3I	CGGCCG	1 cut(s)	2101
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	4 cut(s)	302, 2207, 2291, 2372
Bsh1236I	CGCG	2 cut(s)	392, 2474
Bsh1285I	CGRYCG	2 cut(s)	699, 2104
BshFI	GGCC	3 cut(s)	1261, 2103, 2759
BshNI	GGYRCC	1 cut(s)	1688
BshTI	ACCGGT	2 cut(s)	968, 1685
BsiEI	CGRYCG	2 cut(s)	699, 2104
BsiHKAI	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
BsiHKCI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
BsiWI	CGTACG	1 cut(s)	2745
BslFI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
BslI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
BsmAI	GTCTC	6 cut(s)	255, 1605, 1642, 1754, 2134, 2529
BsmBI	CGTCTC	2 cut(s)	2134, 2529
BsmFI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	1261, 2103, 2759
Bso31I	GGTCTC	2 cut(s)	255, 1754
BsoBI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
Bsp119I	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
Bsp1286I	GDGCHC	7 cut(s)	738, 1145, 1571, 1787, 2123, 2201, 2487
Bsp143I	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
Bsp19I	CCATGG	1 cut(s)	2392
BspACI	CCGC	8 cut(s)	69, 72, 159, 257, 392, 1052, 2100, 2474
BspANI	GGCC	3 cut(s)	1261, 2103, 2759
BspCNI	CTCAG	7 cut(s)	805, 994, 1503, 1638, 1850, 2173, 2746
BspFNI	CGCG	2 cut(s)	392, 2474
BspLI	GGNNCC	3 cut(s)	307, 1194, 1690
BspMAI	CTGCAG	4 cut(s)	605, 876, 1757, 2237
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	5 cut(s)	530, 2087, 2307, 2477, 2651
BspQI	GCTCTTC	1 cut(s)	2588
BspT104I	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
BspT107I	GGYRCC	1 cut(s)	1688
BspTNI	GGTCTC	2 cut(s)	255, 1754
BsrFI	RCCGGY	2 cut(s)	968, 1685
BsrI	ACTGG	4 cut(s)	432, 502, 1117, 2696
BssAI	RCCGGY	2 cut(s)	968, 1685
BssECI	CCNNGG	6 cut(s)	473, 610, 1744, 1778, 2392, 2465
BssMI	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
BssNI	GRCGYC	2 cut(s)	201, 807
BssSI	CACGAG	1 cut(s)	2870
BssT1I	CCWWGG	2 cut(s)	610, 2392
Bst2BI	CACGAG	1 cut(s)	2870
Bst2UI	CCWGG	3 cut(s)	119, 368, 659
Bst4CI	ACNGT	6 cut(s)	323, 350, 956, 1782, 1913, 2549
Bst6I	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
BstACI	GRCGYC	2 cut(s)	201, 807
BstBAI	YACGTR	1 cut(s)	2313
BstBI	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
BstC8I	GCNNGC	5 cut(s)	297, 1296, 1658, 1787, 2487
BstDSI	CCRYGG	3 cut(s)	473, 1778, 2392
BstEII	GGTNACC	1 cut(s)	1739
BstF5I	GGATG	4 cut(s)	606, 1942, 1978, 2660
BstFNI	CGCG	2 cut(s)	392, 2474
BstHHI	GCGC	1 cut(s)	1300
BstKTI	GATC	7 cut(s)	538, 1666, 1906, 2095, 2302, 2472, 2659
BstMAI	GTCTC	6 cut(s)	255, 1605, 1642, 1754, 2134, 2529
BstMBI	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
BstMCI	CGRYCG	2 cut(s)	699, 2104
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
BstNI	CCWGG	3 cut(s)	119, 368, 659
BstNSI	RCATGY	3 cut(s)	1063, 1660, 2213
BstPI	GGTNACC	1 cut(s)	1739
BstSFI	CTRYAG	6 cut(s)	601, 872, 1501, 1753, 2233, 2761
BstSLI	GKGCMC	1 cut(s)	1145
BstUI	CGCG	2 cut(s)	392, 2474
BstV2I	GAAGAC	1 cut(s)	1464
BstX2I	RGATCY	1 cut(s)	2656
BstXI	CCANNNNNNTGG	2 cut(s)	1492, 2377
BstYI	RGATCY	1 cut(s)	2656
BstZI	CGGCCG	1 cut(s)	2101
Bsu36I	CCTNAGG	1 cut(s)	2754
BsuRI	GGCC	3 cut(s)	1261, 2103, 2759
BtgI	CCRYGG	3 cut(s)	473, 1778, 2392
BtgZI	GCGATG	1 cut(s)	2613
BtrI	CACGTC	1 cut(s)	1021
BtsCI	GGATG	4 cut(s)	606, 1942, 1978, 2660
BtsI	GCAGTG	1 cut(s)	2155
BtsIMutI	CAGTG	4 cut(s)	1845, 1972, 2088, 2155
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	297, 1296, 1658, 1787, 2487
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	1300
Cfr10I	RCCGGY	2 cut(s)	968, 1685
Cfr13I	GGNCC	3 cut(s)	306, 971, 1259
Cfr9I	CCCGGG	1 cut(s)	1744
CseI	GACGC	2 cut(s)	815, 2348
CspAI	ACCGGT	2 cut(s)	968, 1685
DpnI	GATC	7 cut(s)	537, 1665, 1905, 2094, 2301, 2471, 2658
DpnII	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
EaeI	YGGCCR	1 cut(s)	2101
EagI	CGGCCG	1 cut(s)	2101
Eam1104I	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
EarI	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
EciI	GGCGGA	1 cut(s)	1041
Ecl136II	GAGCTC	2 cut(s)	736, 2199
EclXI	CGGCCG	1 cut(s)	2101
Eco130I	CCWWGG	2 cut(s)	610, 2392
Eco147I	AGGCCT	1 cut(s)	2759
Eco24I	GRGCYC	4 cut(s)	738, 1571, 2201, 2487
Eco31I	GGTCTC	2 cut(s)	255, 1754
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	2 cut(s)	306, 971
Eco52I	CGGCCG	1 cut(s)	2101
Eco53kI	GAGCTC	2 cut(s)	736, 2199
Eco57I	CTGAAG	3 cut(s)	1082, 1948, 2729
Eco72I	CACGTG	1 cut(s)	2313
Eco81I	CCTNAGG	1 cut(s)	2754
Eco88I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
Eco91I	GGTNACC	1 cut(s)	1739
EcoICRI	GAGCTC	2 cut(s)	736, 2199
EcoO65I	GGTNACC	1 cut(s)	1739
EcoRI	GAATTC	1 cut(s)	1585
EcoRII	CCWGG	3 cut(s)	117, 366, 657
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	2 cut(s)	610, 2392
EcoT38I	GRGCYC	4 cut(s)	738, 1571, 2201, 2487
ErhI	CCWWGG	2 cut(s)	610, 2392
Esp3I	CGTCTC	2 cut(s)	2134, 2529
FaqI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	2 cut(s)	269, 2081
FblI	GTMKAC	2 cut(s)	2034, 2268
FokI	GGATG	4 cut(s)	593, 1949, 1985, 2647
FriOI	GRGCYC	4 cut(s)	738, 1571, 2201, 2487
FspBI	CTAG	7 cut(s)	1637, 2048, 2244, 2408, 2633, 2811, 2916
FspI	TGCGCA	1 cut(s)	1299
GlaI	GCGC	1 cut(s)	1299
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	4 cut(s)	101, 449, 680, 752
HaeIII	GGCC	3 cut(s)	1261, 2103, 2759
HgaI	GACGC	2 cut(s)	815, 2348
HhaI	GCGC	1 cut(s)	1300
Hin1I	GRCGYC	2 cut(s)	201, 807
Hin6I	GCGC	1 cut(s)	1298
HinP1I	GCGC	1 cut(s)	1298
HincII	GTYRAC	3 cut(s)	1152, 1168, 1359
HindII	GTYRAC	3 cut(s)	1152, 1168, 1359
HindIII	AAGCTT	4 cut(s)	932, 1292, 2290, 2327
Hpy99I	CGWCG	7 cut(s)	83, 203, 206, 809, 1022, 1150, 1811
HpyAV	CCTTC	7 cut(s)	821, 1250, 1888, 1915, 1972, 2161, 2841
HpyCH4III	ACNGT	6 cut(s)	323, 350, 956, 1782, 1913, 2549
HpyCH4IV	ACGT	6 cut(s)	201, 1020, 1148, 2192, 2312, 2748
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
HpySE526I	ACGT	6 cut(s)	201, 1020, 1148, 2192, 2312, 2748
Hsp92I	GRCGYC	2 cut(s)	201, 807
HspAI	GCGC	1 cut(s)	1298
Kzo9I	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
LguI	GCTCTTC	1 cut(s)	2588
LmnI	GCTCC	5 cut(s)	430, 733, 2363, 2563, 2629
LweI	GCATC	5 cut(s)	442, 615, 1649, 2121, 2167
MaeI	CTAG	7 cut(s)	1637, 2048, 2244, 2408, 2633, 2811, 2916
MaeII	ACGT	6 cut(s)	201, 1020, 1148, 2192, 2312, 2748
MalI	GATC	7 cut(s)	537, 1665, 1905, 2094, 2301, 2471, 2658
MboI	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
MfeI	CAATTG	1 cut(s)	1436
MflI	RGATCY	1 cut(s)	2656
MhlI	GDGCHC	7 cut(s)	738, 1145, 1571, 1787, 2123, 2201, 2487
MlyI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
MmeI	TCCRAC	6 cut(s)	87, 981, 1005, 1830, 2341, 2358
MroXI	GAANNNNTTC	2 cut(s)	2111, 2228
MseI	TTAA	6 cut(s)	570, 926, 1109, 1886, 2514, 2937
MslI	CAYNNNNRTG	8 cut(s)	491, 758, 1019, 2129, 2214, 2313, 2397, 2421
MspA1I	CMGCKG	5 cut(s)	259, 453, 730, 877, 1087
MunI	CAATTG	1 cut(s)	1436
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	119, 368, 659
MvnI	CGCG	2 cut(s)	392, 2474
MwoI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
NciI	CCSGG	8 cut(s)	463, 1042, 1156, 1628, 1745, 1746, 2467, 2641
NcoI	CCATGG	1 cut(s)	2392
NdeI	CATATG	2 cut(s)	269, 2081
NdeII	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
NlaIV	GGNNCC	3 cut(s)	307, 1194, 1690
NmuCI	GTSAC	4 cut(s)	521, 1514, 2043, 2635
NsbI	TGCGCA	1 cut(s)	1299
NspI	RCATGY	3 cut(s)	1063, 1660, 2213
NspV	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
OliI	CACNNNNGTG	1 cut(s)	2313
PaeI	GCATGC	1 cut(s)	1660
PaeR7I	CTCGAG	3 cut(s)	578, 794, 2254
PaqCI	CACCTGC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	2759
PciI	ACATGT	1 cut(s)	1059
PciSI	GCTCTTC	1 cut(s)	2588
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	2 cut(s)	2111, 2228
Pfl23II	CGTACG	1 cut(s)	2745
PflFI	GACNNNGTC	1 cut(s)	1811
PflMI	CCANNNNNTGG	2 cut(s)	723, 2666
PfoI	TCCNGGA	3 cut(s)	117, 461, 1626
PinAI	ACCGGT	2 cut(s)	968, 1685
PleI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
PmaCI	CACGTG	1 cut(s)	2313
PmlI	CACGTG	1 cut(s)	2313
PpsI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
Ppu21I	YACGTR	1 cut(s)	2313
PscI	ACATGT	1 cut(s)	1059
Psp124BI	GAGCTC	2 cut(s)	738, 2201
Psp6I	CCWGG	3 cut(s)	117, 366, 657
PspCI	CACGTG	1 cut(s)	2313
PspEI	GGTNACC	1 cut(s)	1739
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	3 cut(s)	117, 366, 657
PspLI	CGTACG	1 cut(s)	2745
PspN4I	GGNNCC	3 cut(s)	307, 1194, 1690
PspPI	GGNCC	3 cut(s)	306, 971, 1259
PspXI	VCTCGAGB	2 cut(s)	578, 2254
PstI	CTGCAG	4 cut(s)	605, 876, 1757, 2237
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	2656
PsyI	GACNNNGTC	1 cut(s)	1811
PvuII	CAGCTG	4 cut(s)	453, 730, 877, 1087
RseI	CAYNNNNRTG	8 cut(s)	491, 758, 1019, 2129, 2214, 2313, 2397, 2421
SacI	GAGCTC	2 cut(s)	738, 2201
SapI	GCTCTTC	1 cut(s)	2588
SaqAI	TTAA	6 cut(s)	570, 926, 1109, 1886, 2514, 2937
Sau3AI	GATC	7 cut(s)	535, 1663, 1903, 2092, 2299, 2469, 2656
Sau96I	GGNCC	3 cut(s)	306, 971, 1259
ScaI	AGTACT	3 cut(s)	2276, 2622, 2934
SchI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
SduI	GDGCHC	7 cut(s)	738, 1145, 1571, 1787, 2123, 2201, 2487
SfaNI	GCATC	5 cut(s)	442, 615, 1649, 2121, 2167
SfcI	CTRYAG	6 cut(s)	601, 872, 1501, 1753, 2233, 2761
Sfr274I	CTCGAG	3 cut(s)	578, 794, 2254
SfuI	TTCGAA	4 cut(s)	230, 1244, 1352, 2159
SinI	GGWCC	2 cut(s)	306, 971
SlaI	CTCGAG	3 cut(s)	578, 794, 2254
SmaI	CCCGGG	1 cut(s)	1746
SmiMI	CAYNNNNRTG	8 cut(s)	491, 758, 1019, 2129, 2214, 2313, 2397, 2421
SmlI	CTYRAG	5 cut(s)	340, 578, 794, 1995, 2254
SmoI	CTYRAG	5 cut(s)	340, 578, 794, 1995, 2254
SpeI	ACTAGT	1 cut(s)	2243
SphI	GCATGC	1 cut(s)	1660
SseBI	AGGCCT	1 cut(s)	2759
SsiI	CCGC	8 cut(s)	69, 72, 159, 257, 392, 1052, 2100, 2474
SspI	AATATT	1 cut(s)	1854
SspMI	CTAG	7 cut(s)	1637, 2048, 2244, 2408, 2633, 2811, 2916
SstI	GAGCTC	2 cut(s)	738, 2201
StuI	AGGCCT	1 cut(s)	2759
StyI	CCWWGG	2 cut(s)	610, 2392
TaaI	ACNGT	6 cut(s)	323, 350, 956, 1782, 1913, 2549
TaiI	ACGT	6 cut(s)	204, 1023, 1151, 2195, 2315, 2751
TatI	WGTACW	3 cut(s)	2274, 2620, 2932
TauI	GCSGC	3 cut(s)	71, 74, 2103
Tru1I	TTAA	6 cut(s)	570, 926, 1109, 1886, 2514, 2937
Tru9I	TTAA	6 cut(s)	570, 926, 1109, 1886, 2514, 2937
TscAI	CASTG	4 cut(s)	1845, 1972, 2095, 2155
TseFI	GTSAC	4 cut(s)	521, 1514, 2043, 2635
Tsp45I	GTSAC	4 cut(s)	521, 1514, 2043, 2635
TspDTI	ATGAA	8 cut(s)	387, 428, 1003, 1094, 1905, 2339, 2405, 2894
TspGWI	ACGGA	2 cut(s)	347, 2301
TspMI	CCCGGG	1 cut(s)	1744
TspRI	CASTG	4 cut(s)	1845, 1972, 2095, 2155
Tth111I	GACNNNGTC	1 cut(s)	1811
Van91I	CCANNNNNTGG	2 cut(s)	723, 2666
VneI	GTGCAC	1 cut(s)	1141
VpaK11BI	GGWCC	2 cut(s)	306, 971
XapI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
XceI	RCATGY	3 cut(s)	1063, 1660, 2213
XhoI	CTCGAG	3 cut(s)	578, 794, 2254
XmaI	CCCGGG	1 cut(s)	1744
XmiI	GTMKAC	2 cut(s)	2034, 2268
XmnI	GAANNNNTTC	2 cut(s)	2111, 2228
XspI	CTAG	7 cut(s)	1637, 2048, 2244, 2408, 2633, 2811, 2916
ZraI	GACGTC	1 cut(s)	202
ZrmI	AGTACT	3 cut(s)	2276, 2622, 2934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.