Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Reverse (-)

13515467 .. 13516929

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0168100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTGGCGGTGGTGGCTAGGGTTTGAAGGCTATGAATTTAGAGTTTCAGGGTTAGAGCTTCGTGCTGATAACCTTTCAGAGCATTACGAGCAAGTAGTGGGAAGCGACATCAGTGAAGAACAATTGAAACATGCCATCCAACATCCTCGAATTCGATACATTCATACTCTAACATCAATCTCAGAGGATGAAATGGTCAACTTAATAGCCGGTGGTCATGAAAATTCAGTGGACTTGGTTACAGTGGCGGAAGCTGTTCACTGGTTTGATCTTCCTCATTTCTATTCACTCGTCAGACGCCTTCTGCGCAAACCAGGAGGCGTAATCGCAGTTTGGGGCTACAACGACATGGTAGTAAGCCCCGATTTTGATCTTTTAATGAAGCGTTACCGCGAAAAGATGTTACCATATTATGACCCGAAATCAAGCTACTTATGGGAGGGTTATAGGACACTTCCATTTCCATTTGAGAGTGTTGGATTAGGTCGTGAAGGAGAGCCTATGGCACTTGAAATACATAAGGAACCTTCATTTCAGGGGCTTGTGAGGCTTCATAGGTCTTCCTCTGCAGTCACTACGGCTAAAGACAAGGGTGTGGATTTGTTGTCTGAAGAGGTGATTGAAGAGATTCAAGGAGTTTGGGGTGGGCCTGATCTGGTTAGATCTGTTACGTACAAGGCTTTTATGCTTGCTGGCAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

234

Amino Acids

26.9

Weight (kDa)

5.49

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	22 - 110	2.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	308
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	7, 248, 391
AcsI	RAATTY	3 cut(s)	35, 150, 223
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	674
AgsI	TTSAA	5 cut(s)	26, 127, 512, 623, 632
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	58, 254, 429
AluI	AGCT	3 cut(s)	58, 254, 429
AoxI	GGCC	1 cut(s)	647
ApoI	RAATTY	3 cut(s)	35, 150, 223
Asp700I	GAANNNNTTC	2 cut(s)	255, 627
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	552
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	567
BglII	AGATCT	1 cut(s)	662
Bme1390I	CCNGG	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	672
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	135, 142, 193
BseJI	GATNNNNATC	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	210
BsnI	GGCC	1 cut(s)	649
Bsp143I	GATC	4 cut(s)	268, 370, 652, 662
BspACI	CCGC	3 cut(s)	7, 248, 391
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	4 cut(s)	268, 370, 652, 662
BssNI	GRCGYC	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	606, 618
BstACI	GRCGYC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	690, 694
BstDEI	CTNAG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	135, 142, 193
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	271, 373, 655, 665
BstMBI	GATC	4 cut(s)	268, 370, 652, 662
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 88, 306, 547
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	567
BstSNI	TACGTA	1 cut(s)	672
BstUI	CGCG	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	135, 142, 193
BtsIMutI	CAGTG	4 cut(s)	118, 234, 249, 259
Cac8I	GCNNGC	2 cut(s)	690, 694
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	673
CviAII	CATG	3 cut(s)	131, 218, 349
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	4 cut(s)	270, 372, 654, 664
DpnII	GATC	4 cut(s)	268, 370, 652, 662
Eam1104I	CTCTTC	2 cut(s)	606, 618
EarI	CTCTTC	2 cut(s)	606, 618
EciI	GGCGGA	1 cut(s)	263
Eco105I	TACGTA	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	134, 221, 352
FatI	CATG	3 cut(s)	130, 217, 348
FokI	GGATG	3 cut(s)	122, 129, 200
FspBI	CTAG	1 cut(s)	17
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	134, 221, 352
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	628
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	3 cut(s)	199, 232, 259
Hpy188I	TCNGA	4 cut(s)	79, 184, 296, 610
Hpy188III	TCNNGA	2 cut(s)	218, 488
Hpy8I	GTNNAC	3 cut(s)	199, 232, 259
HpyAV	CCTTC	4 cut(s)	20, 311, 485, 537
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 88, 306, 547
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	1 cut(s)	671
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	134, 221, 352
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	268, 370, 652, 662
LpnPI	CCDG	9 cut(s)	33, 223, 247, 300, 327, 521, 641, 663, 678
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	5 cut(s)	238, 386, 402, 571, 667
MalI	GATC	4 cut(s)	270, 372, 654, 664
MboI	GATC	4 cut(s)	268, 370, 652, 662
MboII	GAAGA	5 cut(s)	128, 263, 552, 623, 635
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	662
MluCI	AATT	4 cut(s)	35, 122, 150, 223
MmeI	TCCRAC	2 cut(s)	163, 457
MnlI	CCTC	8 cut(s)	156, 178, 285, 311, 433, 540, 574, 607
MroXI	GAANNNNTTC	2 cut(s)	255, 627
MseI	TTAA	2 cut(s)	203, 377
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	13, 88, 306, 547
NdeII	GATC	4 cut(s)	268, 370, 652, 662
NlaIII	CATG	3 cut(s)	134, 221, 352
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	571
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	255, 627
PfeI	GAWTC	1 cut(s)	628
Ppu21I	YACGTR	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	662
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	203, 377
Sau3AI	GATC	4 cut(s)	268, 370, 652, 662
Sau96I	GGNCC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	9 cut(s)	60, 75, 256, 431, 487, 529, 560, 618, 674
SfcI	CTRYAG	1 cut(s)	567
SnaBI	TACGTA	1 cut(s)	672
Sse9I	AATT	4 cut(s)	35, 122, 150, 223
SsiI	CCGC	3 cut(s)	7, 248, 391
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	148, 154
TasI	AATT	4 cut(s)	35, 122, 150, 223
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	2 cut(s)	203, 377
Tru9I	TTAA	2 cut(s)	203, 377
TscAI	CASTG	4 cut(s)	118, 234, 249, 266
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	7 cut(s)	48, 152, 204, 234, 395, 519, 542
TspRI	CASTG	4 cut(s)	118, 234, 249, 266
XapI	RAATTY	3 cut(s)	35, 150, 223
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	255, 627
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.