Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Reverse (-)

59067501 .. 59071691

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3090 bp

ATGGACAAAATTGTAATCATTGAGCCCCATCCTCAACAAGCAGCCTTATGGTTAAAATGGCACACTCATGGAGTCTCACTTACGCATTCCCATCTTCAAAGTCCATTCACCCACTCTTCGTCTGTCAACTCCATCATGCCATTACCCAAAAACCACCACCTCCATCTCTACCTCTTCTTCTTCCTCTTCCTCCTCTCCAACGCCGCCGCAGCCGACGAGCTTCAAATCCTACTAAAACTCAAATCCTCCCTCCAGGACTCAGACTCCCAACTCTTCGCCACATGGGACTCCACCGCCAATTCGTTTTGCAAATTCACCGGAATCACCTGCAACGTCGTCGGTTCAGTTCGAGAAATCGAACTTTCGAACCAGAAGCTGTCGGGGTCTCTTCCGTTGGACTCCATATGCCAACTTCCCTCATTAGAAAAGCTCGCTTTCGGGTCCAATTTCCTGCACGGTACAATCACGGAGGACTTGAGAGACTGTACGAAGCTGAAATACCTGGATTTGGCGAAAAACTTGTTCGCGGGTTCATTCCCTGACATATCTTCCTTGTCCCAACTGGAGCATCTTCATCTGAACGGCAGCTGGTTTTCCGGGATTTTCCCGTGGACTTCCCTCACCAACATGACTGGTCTGATTCGTTTGAGCTTGGGTGACAACCCGTTTGATCCCAGCCCGTTTCCAAAGGAAGTTGTAAATCTTAACAAGCTCGAGTGGCTCTACTTGGCAAACTGCACCATCCAAGGAACAATACCAAGTGAAATCGGGAACTTGGTCGAGCTTATCAACCTGGAGTTGTCCGATAACAACATGACCGGAGAAATTCCGGCCGAGATTGGACAGCTCACCAAGCTCTGGCAGCTGGAGCTCTACACCAACAGGTTCACCGGAAAGCTTCCTTTCGGGCTAAGAAACCTCACCATTCTCGAGAACTTCGACGCCTCTGAGAATTTTCTGGAAGGCGATTTGAACGAGTTGAGGTTTCTGACCAACTTGGTTTCTCTGCAGCTGTATGACAACAATTTTTCCGGCGAAGTACCGGAAGAGTTCGGCGAATTAAAGAAGCTTGTGAATCTGTCTTTGTACGGTAACAAGCTGACCGGTCCTCTGCCTCAGAAATTGGGTTCTTGGTCGGAGATTGACTTCATCGACGTGTCGGAGAACTTCTTGACCGGGACTATTCCGCCGGACATGTGCAACAAAGGGACGATGAAGCAGCTGCTCATGCTTCAGAACCAATTAACTGGCGAAATTCCGGCAAACTACGCTAAATGCACGACTTTGACCCGGTTCAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCAGGACTTTGGGGATTGCCGAATGTGGAAATCATTGACATCACTTCGAATCAAATTGAAGGGCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGTGAATTACCGGACGAGATTTCGAAGTCAACTTCGTTGGTTTCGGTTATGTTGAATAACAATCAGTTTTCCGGTAAGATTCCGGCGAAGATAGGGGACTTGAAGCAATTGGGTACTCTGCATTTAGAGAGCAACTTGTTGTCTTCTTCGATTCCCAAGTCATTGGGAAGCTGTAGTTTCCTGAGTGACTTGAACATGGCGAACAACTCGCTTTCCGGTGAAATCCCATCATCTTTGGGCTCTTTGCCGACCTTGAATTCTCTGGATTTGTCTCACAACCAACTCTCCGGAAAAATCCCGGAAAGTCTAGCATCTCTGAGACTAAGCATGCTTGATCTTTCGCACAACAGACTGACCGGTGCCGTACCGGAATCTCTCTCGATTGCAGCCTACAACGGCAGCCTTTCCGGTAACCCGGGTCTCTGCAGCATGGACATCACCTACTTCCCACGGTGCTCGCCGAAAAAGGAAATGTCCGACGATGTCAGGACACTCATTATTTGCTTCTCAGTGGGTACAGCAATATTGTTTGTTTCACTCATTTGCTTCTTGTTCTTAAAGGGGAAGGAGAAAGATCAAGACCGTTCATTGAAGGAAGAATCTTGGGATGTAAAGTCTTTCCATGTAATAACCTTCAGTGAGGATGAGATTCTTGATTCCATTACTCAAGAGAATCTAATTGGAAAAGGAGGTTCTGGAAATGTCTACAAAGTGTCACTAGCCAATGACAAAGAACTCGCCGTGAAGCACATATGGAACACTGATCCAAGCGGCCGGAAAATGTTCAAGAGCACCAACCCAATGCTCGGGAGACGGGGCAGTGGTAGTTCGAAATCGAAGGAATTTGATGCTGAGGTGCAGACGTTGAGCTCAATAAGGCATGTGAATGTGGTGAAGTTGTTCTGCAGCATTACTAGTGAGGACTCGAGCCTTTTGGTCTACGAGTACTTACCGAACGGAAGCTTGTGGGATCGGCTGCACACGTGTGAGAAGATGAAGCTTGATTGGGACGCAAGGTATGAGATTGCAGTCGGAGCAGCCAAAGGGTTGGAGTATCTGCACCATGGCTGTGAGAGGCTAGTGATTCATAGAGATGTCAAGTCGAGTAACATTTTGTTAGATGAGTTTTTGAAGCCCCGGATCGCGGATTTTGGGCTCGCCAAGATGGTTCAGACTAATGCAATTAAGGACTCGACTCATGTTGTTGCTGGAACACACGGTTACATAGCTCCTGAATATGGTTACACCTACAAGGTGAATGAGAAGAGCGATGTGTATAGCTTTGGTGTAGTACTAATGGAGCTAGTGACCGGGAAAAAGCCGATAGATCCATCCTTTGGGGACAACAAGGACATAGTGAACTGGATATGTGGCAACCTGAAGAGTAGAGAGAGCGTGTTAGGTGTGGTGGACTCGTACATTCCTGAGGCCTATAGGGAAGAGGCTATCAAGGTATTGAGAATTGCAATTCTATGCACAGCTAGGCTTCCAGAGCTAAGACCTTCCATGAGAAGTGTCGTTCAGATGCTTGAAGAAGCTCACGAGCCAATGAAATTGCTGGACATTGTTATCAGCAAAGACGGTTCTAGTAAGAAAATGGAAGTACTTAAAGGAACAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1029

Amino Acids

113.98

Weight (kDa)

5.7

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	71 - 111	3.1e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	230 - 366	3.6e-13	Leucine-rich repeat region
LRR_14	PF23598	469 - 593	1.5e-06	Leucine-rich repeat region
LRR_8	PF13855	549 - 606	1.4e-06	Leucine rich repeat
Pkinase	PF00069	711 - 996	7e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	713 - 998	5.3e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc16I	TGCGCA	1 cut(s)	1434
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	1823
AccB7I	CCANNNNNTGG	2 cut(s)	858, 2801
AccI	GTMKAC	2 cut(s)	2169, 2403
AccII	CGCG	2 cut(s)	527, 2609
AccIII	TCCGGA	1 cut(s)	1751
AciI	CCGC	7 cut(s)	204, 207, 294, 527, 1187, 2235, 2609
AclWI	GGATC	5 cut(s)	665, 2222, 2442, 2612, 2786
AcoI	YGGCCR	2 cut(s)	831, 2236
AcsI	RAATTY	6 cut(s)	311, 825, 952, 1254, 1720, 2306
AcuI	CTGAAG	3 cut(s)	1217, 2083, 2864
AcvI	CACGTG	1 cut(s)	2448
AcyI	GRCGYC	1 cut(s)	942
AfiI	CCNNNNNNNGG	8 cut(s)	508, 858, 1296, 1297, 2270, 2608, 2702, 2801
AflIII	ACRYGT	4 cut(s)	1155, 1194, 2445, 2447
AgeI	ACCGGT	2 cut(s)	1103, 1820
AhlI	ACTAGT	1 cut(s)	2378
AjiI	CACGTC	1 cut(s)	1156
AjnI	CCWGG	3 cut(s)	252, 501, 792
AleI	CACNNNNGTG	1 cut(s)	2448
Alw21I	GWGCWC	4 cut(s)	873, 1922, 2258, 2336
Alw26I	GTCTC	7 cut(s)	79, 390, 474, 1740, 1777, 1889, 2269
AlwI	GGATC	5 cut(s)	665, 2222, 2442, 2612, 2786
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
Aor13HI	TCCGGA	1 cut(s)	1751
AoxI	GGCC	4 cut(s)	831, 1394, 2236, 2892
ApoI	RAATTY	6 cut(s)	311, 825, 952, 1254, 1720, 2306
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AsiGI	ACCGGT	2 cut(s)	1103, 1820
Asp700I	GAANNNNTTC	2 cut(s)	2246, 2363
AspLEI	GCGC	1 cut(s)	1435
AspS9I	GGNCC	3 cut(s)	441, 1106, 1394
AsuC2I	CCSGG	8 cut(s)	598, 1177, 1291, 1763, 1880, 1881, 2602, 2776
AsuII	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
AvaI	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
AvaII	GGWCC	2 cut(s)	441, 1106
AxyI	CCTNAGG	1 cut(s)	2889
BanI	GGYRCC	1 cut(s)	1823
BanII	GRGCYC	5 cut(s)	27, 873, 1706, 2336, 2622
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BauI	CACGAG	1 cut(s)	3005
BbrPI	CACGTG	1 cut(s)	2448
BbsI	GAAGAC	1 cut(s)	1599
Bbv12I	GWGCWC	4 cut(s)	873, 1922, 2258, 2336
BbvCI	CCTCAGC	1 cut(s)	2316
BccI	CCATC	8 cut(s)	36, 99, 140, 171, 749, 1699, 2623, 2803
BceAI	ACGGC	4 cut(s)	598, 1811, 1876, 2189
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	3 cut(s)	254, 503, 794
BcnI	CCSGG	8 cut(s)	598, 1177, 1291, 1763, 1880, 1881, 2602, 2776
BcoDI	GTCTC	7 cut(s)	79, 390, 474, 1740, 1777, 1889, 2269
BcuI	ACTAGT	1 cut(s)	2378
BfaI	CTAG	7 cut(s)	1772, 2183, 2379, 2543, 2768, 2946, 3051
BfmI	CTRYAG	5 cut(s)	1007, 1636, 1888, 2368, 2896
BfuAI	ACCTGC	1 cut(s)	335
BmcAI	AGTACT	3 cut(s)	2411, 2757, 3069
Bme18I	GGWCC	2 cut(s)	441, 1106
BmeT110I	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
BmgBI	CACGTC	1 cut(s)	1156
BmgT120I	GGNCC	3 cut(s)	441, 1106, 1394
BmiI	GGNNCC	3 cut(s)	442, 1329, 1825
BmsI	GCATC	4 cut(s)	577, 1784, 2302, 2979
BpiI	GAAGAC	1 cut(s)	1599
BpmI	CTGGAG	4 cut(s)	236, 584, 815, 887
Bpu10I	CCTNAGC	1 cut(s)	2316
Bpu14I	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
BpuEI	CTTGAG	2 cut(s)	496, 2115
BpuMI	CCSGG	8 cut(s)	598, 1177, 1291, 1763, 1880, 1881, 2602, 2776
BsaAI	YACGTR	1 cut(s)	2448
BsaHI	GRCGYC	1 cut(s)	942
BsaI	GGTCTC	2 cut(s)	390, 1889
BsaJI	CCNNGG	6 cut(s)	608, 745, 1879, 1913, 2527, 2600
BsaXI	ACNNNNNCTCC	8 cut(s)	248, 278, 1295, 1301, 1325, 1331, 1733, 1763
Bsc4I	CCNNNNNNNGG	8 cut(s)	508, 858, 1296, 1297, 2270, 2608, 2702, 2801
Bse118I	RCCGGY	2 cut(s)	1103, 1820
Bse1I	ACTGG	4 cut(s)	567, 637, 1252, 2831
Bse21I	CCTNAGG	1 cut(s)	2889
BseAI	TCCGGA	1 cut(s)	1751
BseBI	CCWGG	3 cut(s)	254, 503, 794
BseDI	CCNNGG	6 cut(s)	608, 745, 1879, 1913, 2527, 2600
BseGI	GGATG	5 cut(s)	28, 741, 2077, 2113, 2795
BseLI	CCNNNNNNNGG	8 cut(s)	508, 858, 1296, 1297, 2270, 2608, 2702, 2801
BseMII	CTCAG	8 cut(s)	273, 939, 1130, 1637, 1772, 1986, 2307, 2880
BseNI	ACTGG	4 cut(s)	567, 637, 1252, 2831
BseRI	GAGGAG	1 cut(s)	182
BseX3I	CGGCCG	2 cut(s)	831, 2236
BseYI	CCCAGC	1 cut(s)	674
BsgI	GTGCAG	5 cut(s)	437, 721, 2342, 2426, 2507
Bsh1236I	CGCG	2 cut(s)	527, 2609
Bsh1285I	CGRYCG	2 cut(s)	834, 2239
BshFI	GGCC	4 cut(s)	833, 1396, 2238, 2894
BshNI	GGYRCC	1 cut(s)	1823
BshTI	ACCGGT	2 cut(s)	1103, 1820
BsiEI	CGRYCG	2 cut(s)	834, 2239
BsiHKAI	GWGCWC	4 cut(s)	873, 1922, 2258, 2336
BsiHKCI	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
BslFI	GGGAC	7 cut(s)	299, 541, 1192, 1222, 1574, 2486, 2819
BslI	CCNNNNNNNGG	8 cut(s)	508, 858, 1296, 1297, 2270, 2608, 2702, 2801
BsmAI	GTCTC	7 cut(s)	79, 390, 474, 1740, 1777, 1889, 2269
BsmBI	CGTCTC	1 cut(s)	2269
BsmFI	GGGAC	7 cut(s)	299, 541, 1192, 1222, 1574, 2486, 2819
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	4 cut(s)	833, 1396, 2238, 2894
Bso31I	GGTCTC	2 cut(s)	390, 1889
BsoBI	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
Bsp119I	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
Bsp1286I	GDGCHC	7 cut(s)	27, 873, 1706, 1922, 2258, 2336, 2622
Bsp13I	TCCGGA	1 cut(s)	1751
Bsp143I	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
Bsp19I	CCATGG	1 cut(s)	2527
BspACI	CCGC	7 cut(s)	204, 207, 294, 527, 1187, 2235, 2609
BspANI	GGCC	4 cut(s)	833, 1396, 2238, 2894
BspCNI	CTCAG	8 cut(s)	272, 940, 1129, 1638, 1773, 1985, 2308, 2881
BspEI	TCCGGA	1 cut(s)	1751
BspFNI	CGCG	2 cut(s)	527, 2609
BspLI	GGNNCC	3 cut(s)	442, 1329, 1825
BspMAI	CTGCAG	3 cut(s)	1011, 1892, 2372
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	5 cut(s)	665, 2222, 2442, 2612, 2786
BspT104I	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
BspT107I	GGYRCC	1 cut(s)	1823
BspTNI	GGTCTC	2 cut(s)	390, 1889
BsrFI	RCCGGY	2 cut(s)	1103, 1820
BsrI	ACTGG	4 cut(s)	567, 637, 1252, 2831
BssAI	RCCGGY	2 cut(s)	1103, 1820
BssECI	CCNNGG	6 cut(s)	608, 745, 1879, 1913, 2527, 2600
BssMI	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
BssNI	GRCGYC	1 cut(s)	942
BssSI	CACGAG	1 cut(s)	3005
BssT1I	CCWWGG	2 cut(s)	745, 2527
Bst2BI	CACGAG	1 cut(s)	3005
Bst2UI	CCWGG	3 cut(s)	254, 503, 794
Bst4CI	ACNGT	7 cut(s)	458, 485, 1091, 1917, 2048, 2684, 3047
Bst6I	CTCTTC	9 cut(s)	121, 179, 191, 278, 393, 1041, 2723, 2840, 2898
BstACI	GRCGYC	1 cut(s)	942
BstBAI	YACGTR	1 cut(s)	2448
BstBI	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
BstC8I	GCNNGC	5 cut(s)	432, 1431, 1793, 1922, 2622
BstDSI	CCRYGG	3 cut(s)	608, 1913, 2527
BstEII	GGTNACC	1 cut(s)	1874
BstF5I	GGATG	5 cut(s)	28, 741, 2077, 2113, 2795
BstFNI	CGCG	2 cut(s)	527, 2609
BstHHI	GCGC	1 cut(s)	1435
BstKTI	GATC	7 cut(s)	673, 1801, 2041, 2230, 2437, 2607, 2794
BstMAI	GTCTC	7 cut(s)	79, 390, 474, 1740, 1777, 1889, 2269
BstMBI	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
BstMCI	CGRYCG	2 cut(s)	834, 2239
BstMWI	GCNNNNNNNGC	9 cut(s)	209, 718, 853, 862, 868, 1228, 1268, 2498, 2956
BstNI	CCWGG	3 cut(s)	254, 503, 794
BstNSI	RCATGY	3 cut(s)	1198, 1795, 2348
BstPI	GGTNACC	1 cut(s)	1874
BstSFI	CTRYAG	5 cut(s)	1007, 1636, 1888, 2368, 2896
BstUI	CGCG	2 cut(s)	527, 2609
BstV2I	GAAGAC	1 cut(s)	1599
BstX2I	RGATCY	1 cut(s)	2791
BstXI	CCANNNNNNTGG	3 cut(s)	1247, 1627, 2512
BstYI	RGATCY	1 cut(s)	2791
BstZI	CGGCCG	2 cut(s)	831, 2236
Bsu36I	CCTNAGG	1 cut(s)	2889
BsuRI	GGCC	4 cut(s)	833, 1396, 2238, 2894
BtgI	CCRYGG	3 cut(s)	608, 1913, 2527
BtgZI	GCGATG	1 cut(s)	2748
BtrI	CACGTC	1 cut(s)	1156
BtsCI	GGATG	5 cut(s)	28, 741, 2077, 2113, 2795
BtsI	GCAGTG	1 cut(s)	2290
BtsIMutI	CAGTG	4 cut(s)	1980, 2107, 2223, 2290
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	5 cut(s)	432, 1431, 1793, 1922, 2622
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	1435
Cfr10I	RCCGGY	2 cut(s)	1103, 1820
Cfr13I	GGNCC	3 cut(s)	441, 1106, 1394
Cfr9I	CCCGGG	1 cut(s)	1879
CseI	GACGC	2 cut(s)	950, 2483
CspAI	ACCGGT	2 cut(s)	1103, 1820
DpnI	GATC	7 cut(s)	672, 1800, 2040, 2229, 2436, 2606, 2793
DpnII	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
EaeI	YGGCCR	2 cut(s)	831, 2236
EagI	CGGCCG	2 cut(s)	831, 2236
Eam1104I	CTCTTC	9 cut(s)	121, 179, 191, 278, 393, 1041, 2723, 2840, 2898
EarI	CTCTTC	9 cut(s)	121, 179, 191, 278, 393, 1041, 2723, 2840, 2898
EciI	GGCGGA	1 cut(s)	1176
Ecl136II	GAGCTC	2 cut(s)	871, 2334
EclXI	CGGCCG	2 cut(s)	831, 2236
Eco130I	CCWWGG	2 cut(s)	745, 2527
Eco147I	AGGCCT	1 cut(s)	2894
Eco24I	GRGCYC	5 cut(s)	27, 873, 1706, 2336, 2622
Eco31I	GGTCTC	2 cut(s)	390, 1889
Eco32I	GATATC	1 cut(s)	1411
Eco47I	GGWCC	2 cut(s)	441, 1106
Eco52I	CGGCCG	2 cut(s)	831, 2236
Eco53kI	GAGCTC	2 cut(s)	871, 2334
Eco57I	CTGAAG	3 cut(s)	1217, 2083, 2864
Eco72I	CACGTG	1 cut(s)	2448
Eco81I	CCTNAGG	1 cut(s)	2889
Eco88I	CYCGRG	5 cut(s)	713, 929, 1879, 2270, 2389
Eco91I	GGTNACC	1 cut(s)	1874
EcoICRI	GAGCTC	2 cut(s)	871, 2334
EcoO65I	GGTNACC	1 cut(s)	1874
EcoRI	GAATTC	1 cut(s)	1720
EcoRII	CCWGG	3 cut(s)	252, 501, 792
EcoRV	GATATC	1 cut(s)	1411
EcoT14I	CCWWGG	2 cut(s)	745, 2527
EcoT38I	GRGCYC	5 cut(s)	27, 873, 1706, 2336, 2622
ErhI	CCWWGG	2 cut(s)	745, 2527
Esp3I	CGTCTC	1 cut(s)	2269
FaqI	GGGAC	7 cut(s)	299, 541, 1192, 1222, 1574, 2486, 2819
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	2 cut(s)	404, 2216
FblI	GTMKAC	2 cut(s)	2169, 2403
FokI	GGATG	5 cut(s)	15, 728, 2084, 2120, 2782
FriOI	GRGCYC	5 cut(s)	27, 873, 1706, 2336, 2622
FspBI	CTAG	7 cut(s)	1772, 2183, 2379, 2543, 2768, 2946, 3051
FspI	TGCGCA	1 cut(s)	1434
GlaI	GCGC	1 cut(s)	1434
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	4 cut(s)	236, 584, 815, 887
HaeIII	GGCC	4 cut(s)	833, 1396, 2238, 2894
HgaI	GACGC	2 cut(s)	950, 2483
HhaI	GCGC	1 cut(s)	1435
Hin1I	GRCGYC	1 cut(s)	942
Hin6I	GCGC	1 cut(s)	1433
HinP1I	GCGC	1 cut(s)	1433
HincII	GTYRAC	3 cut(s)	127, 1303, 1494
HindII	GTYRAC	3 cut(s)	127, 1303, 1494
HindIII	AAGCTT	5 cut(s)	896, 1067, 1427, 2425, 2462
Hpy166II	GTNNAC	9 cut(s)	127, 612, 888, 1303, 1494, 2170, 2404, 2824, 2875
Hpy8I	GTNNAC	9 cut(s)	127, 612, 888, 1303, 1494, 2170, 2404, 2824, 2875
Hpy99I	CGWCG	6 cut(s)	218, 338, 341, 944, 1157, 1946
HpyAV	CCTTC	7 cut(s)	956, 1385, 2023, 2050, 2107, 2296, 2976
HpyCH4III	ACNGT	7 cut(s)	458, 485, 1091, 1917, 2048, 2684, 3047
HpyCH4IV	ACGT	4 cut(s)	333, 1155, 2327, 2447
HpyF10VI	GCNNNNNNNGC	9 cut(s)	209, 718, 853, 862, 868, 1228, 1268, 2498, 2956
HpySE526I	ACGT	4 cut(s)	333, 1155, 2327, 2447
Hsp92I	GRCGYC	1 cut(s)	942
HspAI	GCGC	1 cut(s)	1433
Kpn2I	TCCGGA	1 cut(s)	1751
Kzo9I	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
LguI	GCTCTTC	1 cut(s)	2723
LmnI	GCTCC	5 cut(s)	565, 868, 2498, 2698, 2764
LweI	GCATC	4 cut(s)	577, 1784, 2302, 2979
MaeI	CTAG	7 cut(s)	1772, 2183, 2379, 2543, 2768, 2946, 3051
MaeII	ACGT	4 cut(s)	333, 1155, 2327, 2447
MalI	GATC	7 cut(s)	672, 1800, 2040, 2229, 2436, 2606, 2793
MboI	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
MfeI	CAATTG	1 cut(s)	1571
MflI	RGATCY	1 cut(s)	2791
MhlI	GDGCHC	7 cut(s)	27, 873, 1706, 1922, 2258, 2336, 2622
MlyI	GAGTC	9 cut(s)	81, 251, 257, 281, 392, 2381, 2648, 2653, 2870
MmeI	TCCRAC	7 cut(s)	222, 375, 1116, 1140, 1965, 2476, 2493
MroI	TCCGGA	1 cut(s)	1751
MroXI	GAANNNNTTC	2 cut(s)	2246, 2363
MseI	TTAA	7 cut(s)	53, 705, 1061, 1244, 2021, 2649, 3072
MslI	CAYNNNNRTG	7 cut(s)	66, 626, 1154, 2349, 2448, 2532, 2556
MspA1I	CMGCKG	4 cut(s)	588, 865, 1012, 1222
MunI	CAATTG	1 cut(s)	1571
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	254, 503, 794
MvnI	CGCG	2 cut(s)	527, 2609
MwoI	GCNNNNNNNGC	9 cut(s)	209, 718, 853, 862, 868, 1228, 1268, 2498, 2956
NciI	CCSGG	8 cut(s)	598, 1177, 1291, 1763, 1880, 1881, 2602, 2776
NcoI	CCATGG	1 cut(s)	2527
NdeI	CATATG	2 cut(s)	404, 2216
NdeII	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
NlaIV	GGNNCC	3 cut(s)	442, 1329, 1825
NmeAIII	GCCGAG	1 cut(s)	859
NmuCI	GTSAC	4 cut(s)	656, 1649, 2178, 2770
NsbI	TGCGCA	1 cut(s)	1434
NspI	RCATGY	3 cut(s)	1198, 1795, 2348
NspV	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
OliI	CACNNNNGTG	1 cut(s)	2448
PaeI	GCATGC	1 cut(s)	1795
PaeR7I	CTCGAG	3 cut(s)	713, 929, 2389
PaqCI	CACCTGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	2894
PciI	ACATGT	1 cut(s)	1194
PciSI	GCTCTTC	1 cut(s)	2723
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	2 cut(s)	2246, 2363
PflFI	GACNNNGTC	1 cut(s)	1946
PflMI	CCANNNNNTGG	2 cut(s)	858, 2801
PfoI	TCCNGGA	3 cut(s)	252, 596, 1761
PinAI	ACCGGT	2 cut(s)	1103, 1820
PleI	GAGTC	9 cut(s)	80, 251, 257, 281, 392, 2381, 2648, 2653, 2870
PmaCI	CACGTG	1 cut(s)	2448
PmlI	CACGTG	1 cut(s)	2448
PpsI	GAGTC	9 cut(s)	80, 251, 257, 281, 392, 2381, 2648, 2653, 2870
Ppu21I	YACGTR	1 cut(s)	2448
PscI	ACATGT	1 cut(s)	1194
Psp124BI	GAGCTC	2 cut(s)	873, 2336
Psp6I	CCWGG	3 cut(s)	252, 501, 792
PspCI	CACGTG	1 cut(s)	2448
PspEI	GGTNACC	1 cut(s)	1874
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	3 cut(s)	252, 501, 792
PspN4I	GGNNCC	3 cut(s)	442, 1329, 1825
PspPI	GGNCC	3 cut(s)	441, 1106, 1394
PspXI	VCTCGAGB	2 cut(s)	713, 2389
PstI	CTGCAG	3 cut(s)	1011, 1892, 2372
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	2791
PsyI	GACNNNGTC	1 cut(s)	1946
PvuII	CAGCTG	4 cut(s)	588, 865, 1012, 1222
RseI	CAYNNNNRTG	7 cut(s)	66, 626, 1154, 2349, 2448, 2532, 2556
SacI	GAGCTC	2 cut(s)	873, 2336
SapI	GCTCTTC	1 cut(s)	2723
SaqAI	TTAA	7 cut(s)	53, 705, 1061, 1244, 2021, 2649, 3072
Sau3AI	GATC	7 cut(s)	670, 1798, 2038, 2227, 2434, 2604, 2791
Sau96I	GGNCC	3 cut(s)	441, 1106, 1394
ScaI	AGTACT	3 cut(s)	2411, 2757, 3069
SchI	GAGTC	9 cut(s)	81, 251, 257, 281, 392, 2381, 2648, 2653, 2870
SduI	GDGCHC	7 cut(s)	27, 873, 1706, 1922, 2258, 2336, 2622
SfaNI	GCATC	4 cut(s)	577, 1784, 2302, 2979
SfcI	CTRYAG	5 cut(s)	1007, 1636, 1888, 2368, 2896
Sfr274I	CTCGAG	3 cut(s)	713, 929, 2389
SfuI	TTCGAA	4 cut(s)	365, 1379, 1487, 2294
SinI	GGWCC	2 cut(s)	441, 1106
SlaI	CTCGAG	3 cut(s)	713, 929, 2389
SmaI	CCCGGG	1 cut(s)	1881
SmiMI	CAYNNNNRTG	7 cut(s)	66, 626, 1154, 2349, 2448, 2532, 2556
SmlI	CTYRAG	5 cut(s)	475, 713, 929, 2130, 2389
SmoI	CTYRAG	5 cut(s)	475, 713, 929, 2130, 2389
SpeI	ACTAGT	1 cut(s)	2378
SphI	GCATGC	1 cut(s)	1795
SseBI	AGGCCT	1 cut(s)	2894
SsiI	CCGC	7 cut(s)	204, 207, 294, 527, 1187, 2235, 2609
SspI	AATATT	1 cut(s)	1989
SspMI	CTAG	7 cut(s)	1772, 2183, 2379, 2543, 2768, 2946, 3051
SstI	GAGCTC	2 cut(s)	873, 2336
StuI	AGGCCT	1 cut(s)	2894
StyI	CCWWGG	2 cut(s)	745, 2527
TaaI	ACNGT	7 cut(s)	458, 485, 1091, 1917, 2048, 2684, 3047
TaiI	ACGT	4 cut(s)	336, 1158, 2330, 2450
TatI	WGTACW	3 cut(s)	2409, 2755, 3067
TauI	GCSGC	3 cut(s)	206, 209, 2238
Tru1I	TTAA	7 cut(s)	53, 705, 1061, 1244, 2021, 2649, 3072
Tru9I	TTAA	7 cut(s)	53, 705, 1061, 1244, 2021, 2649, 3072
TscAI	CASTG	4 cut(s)	1980, 2107, 2230, 2290
TseFI	GTSAC	4 cut(s)	656, 1649, 2178, 2770
Tsp45I	GTSAC	4 cut(s)	656, 1649, 2178, 2770
TspDTI	ATGAA	8 cut(s)	522, 563, 1138, 1229, 2040, 2474, 2540, 3029
TspGWI	ACGGA	3 cut(s)	381, 482, 2436
TspMI	CCCGGG	1 cut(s)	1879
TspRI	CASTG	4 cut(s)	1980, 2107, 2230, 2290
Tth111I	GACNNNGTC	1 cut(s)	1946
Van91I	CCANNNNNTGG	2 cut(s)	858, 2801
VpaK11BI	GGWCC	2 cut(s)	441, 1106
XapI	RAATTY	6 cut(s)	311, 825, 952, 1254, 1720, 2306
XceI	RCATGY	3 cut(s)	1198, 1795, 2348
XhoI	CTCGAG	3 cut(s)	713, 929, 2389
XmaI	CCCGGG	1 cut(s)	1879
XmiI	GTMKAC	2 cut(s)	2169, 2403
XmnI	GAANNNNTTC	2 cut(s)	2246, 2363
XspI	CTAG	7 cut(s)	1772, 2183, 2379, 2543, 2768, 2946, 3051
ZrmI	AGTACT	3 cut(s)	2411, 2757, 3069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.