Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Reverse (-)

44873825 .. 44878520

Gene Structure 4696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG402600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGCCATTACCCAAAAACCACCACCTCCATCTCTACATCCTCTTCTTCCTCTTCCTCCTCTCCAACGCCGCCGCAGCCGACGAGCTTCAAATCCTACTGAAACTCAAATCCTCCCTACAAGACTCAAACTCCCAGCTCTTCGCCACCTGGGACTCCACCGCCAATTCGTTTTGCAAATTCACCGGAATCGCCTGCAACGACGTTGGTTCGGTCCGAGAAATAGATCTCTCGAACCAGAACCTATCGGGGTCTCTTCCGTTGGACTCAATATGCCAACTTCCCTCATTAGAAAAGCTCGCTTTCGGGTCCAATTTCCTGCACGGTACAATCACGGAGGACTTGAGAAACTGTACGAAGCTGAAATACCTGGATTTGGGGAAAAACTTGTTCGCGGGTTCATTCCCTGACATATCTTCCTTGTCCCAACTGGAGCATCTTCATCTGAACGGCAGCTGGTTTTCGGGGATTTTCCCGTGGACTTCCCTCACCAACATGACTGGTCTGATTCGTTTGAGCTTGGGTGACAACCCGTTTGATCCGAGCCCGTTTCCAAAGGAAGTTGTAAATCTTAACAAGCTCGAGTGGCTCTACTTGGCAAACTGCAGCATCCAAGGAACAATACCAAGTGAAATCGGGAACTTGGTCGAGCTTATCAACCTGGAGTTGTCCGATAACAACATGACTGGAGAAATTCCGGCCGAGATTGGACAGCTCACCAAGCTCTGGCAGCTGGAGCTCTACACCAACAAGTTCACCGGAAAGCTTCCTTTCGGGCTAAGAAACCTCACCATTCTCGAGAACTTCGACGCCTCTGAGAATTTTCTGGAAGGCGATTTGAACGAGTTGAGGTTTCTGACCAAGTTGGTTTCTCTGCAGCTGTATGAGAACAATTTTTCCGGCGAAATACCGGAAGAGTTCGGCGAATTAGAGAAGCTTGTGAATCTGTCTTTGTACGGTAACAAGCTGACCGGTCCTCTGCCTCAGAAATTGGGGTCTTGGTCGGAGATGGACTTCATCGACGTGTCGGAGAACTTCTTGACCGGGACTATTCCGCCGGACATGTGCAACAAAGGGACGATGAAGCAGCTGCTCATGCTTCAGAACCAATTGTCTGGCGAAATTCCGGCAAACTACGCCAAGTGCACGACGTTGACCCGGTTCAGGGTCAACAACAACTCCCTCTCCGGTGTGGTTCCGGCAGGACTTTGGGGATTGCCGAATGTGGCAATCATTGACATCACTTCGAATCAAATTGAAGGGCCGATTACTTCCGATATCGGAAACGCCAAGAAGCTTGCGCAGTTGTTTGTGAGTTACAATCGGTTATCTGGTGAATTACCAGACGAGCTTTCGAAGTCAACTTCGTTGGTTTCGGTTATGTTGAATAACAATCAGTTTTCCGGTAAGATTCCGGCGAAGATAGGGGACTTGAAGCAATTGGGTACTCTGTATTTACAGAGCAACTTGTTGTCTTCTTCGATTCCCAAGTCATTAGGAAGCTGTAATTTCCTGAATGACTTGAACATGGCAAACAACTCGCTCTCCGGTGAAATCCCAGCATCTTTGGGCTCTTTGCCGACCTTGAATTCTCTGGATTTGTCTCACAATCAACTCTCCGGTAAAATCCCGGAAAGTCTGGCATCTCTGAGACTAAGCATGCTTGATCTTTCGCACAACAAACTGACGGGTGCCGTACCGGAATCTCTCTCGATTGCAGCCTACAACGGCAGCCTTTCCGGTAACCCGGGTCTCTGCAGCATGGACATCACCTACTTCCCACGGTGCTCGCCGAAAAAGGAAATGTCCGACGATGTCAGGACACTCATTATTTGCTTCTCAGTGGGTACAGTAATATTGTTTGTTTCACTCATTTGCTTCTTGTTCTTAAAGAGGAAGGAGAAAGATCAAGACCGTTCATTGAAGGAAGAATCTTGGGATGTAAAGTCTTTCCATGTAATAACCTTCAGTGAGGATGAGATTCTTGATTCCATCACACAAGAGAATCTAATTGGAAAAGGAGGTTCTGGAAATGTCTACAAAGTGTCACTAGCCAATGGCAAAGAACTCGCCGTGAAGCACATATGGAACACTGATCCAAGTGGCCGGAAAATGTGCAAGAGCACCACACCGATGCTCGGGAGACGGGGCAGTGGTAGTTCGAAATCGAAGGAATTTGATGCTGAGGTGCAGACGTTGAGCTCAATAAGGCATGTGAATGTGGTGAAGTTGTTCTGCAGCATTACTAGTGAGGACTCGAGCCTTCTGGTCTACGAGTATTTACCGAATGGAAGCTTGTGGGATCGGCTGCACATGTGTGAGAAGATGAAGCTTGATTGGGACGCAAGGTATGAGATTGCAGTCGGAGCAGCCAAAGGGTTGGAGTATCTGCACCATGGCTGTGAGAGGCTAGTAATTCATAGAGATGTCAAGTCCAGTAACATTTTGTTAGACGAGTTTTTGAAGCCCCGGATTGCGGATTTTGGGCTCGCCAAGATGGTTCAGACTAATGCAATCAAGGACTCAACTCATGTTGTTGCTGGAACACACGGTTACATAGCTCCTGAATATGGTTACACCTACAAGGTGAATGAGAAGAGTGATGTGTATAGCTTCGGTGTAGTACTAATGGAGCTAGTGACTGGGAAAAAGCCGATAGATCCATCATTTGGGGACAACAAGGACATAGTGAACTGGATATGCGGCAACCTGAAGAGTAGAGAGTGTGTGTTTGGTGTGGTGGACTCATACATTCCTGAGGCATATAGGGAAGAGGCTATCAAGGTATTGAGAATTGCAATTCTATGCACAGCTAGGCTTCCAGAGCTAAGACCTTCCATGAGAAGTGTCGTTCAAATGCTTGAAGAAGCTCACGAGCCAATGAAATTGCTGAACATTGTTATCAGCAAAGATGGTTCTAGTAAGAAAATGGAAGTACTTAAGGGAACAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

984

Amino Acids

108.88

Weight (kDa)

5.65

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 66	1.8e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	185 - 294	4e-12	Leucine-rich repeat region
LRR_8	PF13855	504 - 561	4.8e-06	Leucine rich repeat
Pkinase	PF00069	666 - 951	5.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	667 - 953	2.5e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1299
AccB1I	GGYRCC	1 cut(s)	1688
AccB7I	CCANNNNNTGG	2 cut(s)	723, 2666
AccI	GTMKAC	2 cut(s)	2034, 2268
AccII	CGCG	1 cut(s)	392
AciI	CCGC	7 cut(s)	69, 72, 159, 392, 1052, 2474, 2700
AclWI	GGATC	4 cut(s)	530, 2087, 2307, 2651
AcoI	YGGCCR	2 cut(s)	696, 2101
AcsI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
AcuI	CTGAAG	3 cut(s)	1082, 1948, 2729
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	8 cut(s)	325, 352, 953, 1444, 1695, 1846, 2622, 2934
AfiI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
AflII	CTTAAG	1 cut(s)	2936
AflIII	ACRYGT	3 cut(s)	1020, 1059, 2310
AgeI	ACCGGT	1 cut(s)	968
AhlI	ACTAGT	1 cut(s)	2243
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	3 cut(s)	146, 366, 657
AleI	CACNNNNGTG	1 cut(s)	2313
AloI	GAACNNNNNNTCC	2 cut(s)	878, 910
Alw21I	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
Alw26I	GTCTC	5 cut(s)	255, 1605, 1642, 1754, 2134
Alw44I	GTGCAC	1 cut(s)	1141
AlwI	GGATC	4 cut(s)	530, 2087, 2307, 2651
Ama87I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
AoxI	GGCC	3 cut(s)	696, 1259, 2101
ApaLI	GTGCAC	1 cut(s)	1141
ApoI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AsiGI	ACCGGT	1 cut(s)	968
Asp700I	GAANNNNTTC	1 cut(s)	2228
AspLEI	GCGC	1 cut(s)	1300
AspS9I	GGNCC	4 cut(s)	211, 306, 971, 1259
AsuC2I	CCSGG	6 cut(s)	1042, 1156, 1628, 1745, 1746, 2467
AsuII	TTCGAA	3 cut(s)	1244, 1352, 2159
AvaI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
AvaII	GGWCC	3 cut(s)	211, 306, 971
AxyI	CCTNAGG	1 cut(s)	2754
BaeGI	GKGCMC	1 cut(s)	1145
BanI	GGYRCC	1 cut(s)	1688
BanII	GRGCYC	5 cut(s)	545, 738, 1571, 2201, 2487
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BauI	CACGAG	1 cut(s)	2870
BbsI	GAAGAC	1 cut(s)	1464
Bbv12I	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
BbvCI	CCTCAGC	1 cut(s)	2181
BccI	CCATC	6 cut(s)	36, 1000, 1997, 2488, 2668, 2903
BceAI	ACGGC	4 cut(s)	463, 1676, 1741, 2054
BcgI	CGANNNNNNTGC	4 cut(s)	1518, 1552, 2047, 2081
BciT130I	CCWGG	3 cut(s)	148, 368, 659
BcnI	CCSGG	6 cut(s)	1042, 1156, 1628, 1745, 1746, 2467
BcoDI	GTCTC	5 cut(s)	255, 1605, 1642, 1754, 2134
BcuI	ACTAGT	1 cut(s)	2243
BfaI	CTAG	6 cut(s)	2048, 2244, 2408, 2633, 2811, 2916
BfmI	CTRYAG	4 cut(s)	601, 872, 1753, 2233
BfrI	CTTAAG	1 cut(s)	2936
BglII	AGATCT	1 cut(s)	223
BmcAI	AGTACT	2 cut(s)	2622, 2934
Bme1390I	CCNGG	9 cut(s)	148, 368, 659, 1042, 1156, 1628, 1745, 1746, 2467
Bme18I	GGWCC	3 cut(s)	211, 306, 971
BmeT110I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	4 cut(s)	211, 306, 971, 1259
BmiI	GGNNCC	3 cut(s)	307, 1194, 1690
BmrFI	CCNGG	9 cut(s)	148, 368, 659, 1042, 1156, 1628, 1745, 1746, 2467
BmrI	ACTGGG	1 cut(s)	2649
BmsI	GCATC	6 cut(s)	442, 615, 1568, 1649, 2121, 2167
BmuI	ACTGGG	1 cut(s)	2649
BpiI	GAAGAC	1 cut(s)	1464
BpmI	CTGGAG	4 cut(s)	449, 680, 705, 752
Bpu10I	CCTNAGC	1 cut(s)	2181
Bpu14I	TTCGAA	3 cut(s)	1244, 1352, 2159
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	6 cut(s)	1042, 1156, 1628, 1745, 1746, 2467
BsaHI	GRCGYC	1 cut(s)	807
BsaI	GGTCTC	2 cut(s)	255, 1754
BsaJI	CCNNGG	7 cut(s)	147, 473, 610, 1744, 1778, 2392, 2465
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 143, 1160, 1166, 1190, 1196, 1526, 1556
Bsc4I	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	6 cut(s)	432, 502, 688, 2433, 2644, 2696
Bse21I	CCTNAGG	1 cut(s)	2754
BseBI	CCWGG	3 cut(s)	148, 368, 659
BseDI	CCNNGG	7 cut(s)	147, 473, 610, 1744, 1778, 2392, 2465
BseGI	GGATG	4 cut(s)	36, 606, 1942, 1978
BseLI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
BseMII	CTCAG	6 cut(s)	804, 995, 1637, 1851, 2172, 2745
BseNI	ACTGG	6 cut(s)	432, 502, 688, 2433, 2644, 2696
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	1145
BseX3I	CGGCCG	1 cut(s)	696
BseYI	CCCAGC	2 cut(s)	132, 1555
BsgI	GTGCAG	4 cut(s)	302, 2207, 2291, 2372
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	3 cut(s)	698, 1261, 2103
BshNI	GGYRCC	1 cut(s)	1688
BshTI	ACCGGT	1 cut(s)	968
BsiEI	CGRYCG	1 cut(s)	699
BsiHKAI	GWGCWC	5 cut(s)	738, 1145, 1787, 2123, 2201
BsiHKCI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
BslFI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
BslI	CCNNNNNNNGG	8 cut(s)	373, 723, 1161, 1162, 2135, 2473, 2567, 2666
BsmAI	GTCTC	5 cut(s)	255, 1605, 1642, 1754, 2134
BsmBI	CGTCTC	1 cut(s)	2134
BsmFI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
BsnI	GGCC	3 cut(s)	698, 1261, 2103
Bso31I	GGTCTC	2 cut(s)	255, 1754
BsoBI	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
Bsp119I	TTCGAA	3 cut(s)	1244, 1352, 2159
Bsp1286I	GDGCHC	8 cut(s)	545, 738, 1145, 1571, 1787, 2123, 2201, 2487
Bsp143I	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
Bsp19I	CCATGG	1 cut(s)	2392
BspACI	CCGC	7 cut(s)	69, 72, 159, 392, 1052, 2474, 2700
BspANI	GGCC	3 cut(s)	698, 1261, 2103
BspCNI	CTCAG	6 cut(s)	805, 994, 1638, 1850, 2173, 2746
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	3 cut(s)	307, 1194, 1690
BspMAI	CTGCAG	4 cut(s)	605, 876, 1757, 2237
BspPI	GGATC	4 cut(s)	530, 2087, 2307, 2651
BspQI	GCTCTTC	1 cut(s)	143
BspT104I	TTCGAA	3 cut(s)	1244, 1352, 2159
BspT107I	GGYRCC	1 cut(s)	1688
BspTI	CTTAAG	1 cut(s)	2936
BspTNI	GGTCTC	2 cut(s)	255, 1754
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	6 cut(s)	432, 502, 688, 2433, 2644, 2696
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	7 cut(s)	147, 473, 610, 1744, 1778, 2392, 2465
BssMI	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
BssNI	GRCGYC	1 cut(s)	807
BssSI	CACGAG	1 cut(s)	2870
BssT1I	CCWWGG	2 cut(s)	610, 2392
Bst2BI	CACGAG	1 cut(s)	2870
Bst2UI	CCWGG	3 cut(s)	148, 368, 659
Bst4CI	ACNGT	7 cut(s)	323, 350, 956, 1782, 1849, 1913, 2549
Bst6I	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
BstACI	GRCGYC	1 cut(s)	807
BstAFI	CTTAAG	1 cut(s)	2936
BstBI	TTCGAA	3 cut(s)	1244, 1352, 2159
BstC8I	GCNNGC	6 cut(s)	193, 297, 1296, 1658, 1787, 2487
BstDEI	CTNAG	9 cut(s)	776, 813, 981, 1646, 1652, 1837, 2181, 2754, 2825
BstDSI	CCRYGG	3 cut(s)	473, 1778, 2392
BstEII	GGTNACC	1 cut(s)	1739
BstF5I	GGATG	4 cut(s)	36, 606, 1942, 1978
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	1300
BstKTI	GATC	7 cut(s)	226, 538, 1666, 1906, 2095, 2302, 2659
BstMAI	GTCTC	5 cut(s)	255, 1605, 1642, 1754, 2134
BstMBI	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
BstNI	CCWGG	3 cut(s)	148, 368, 659
BstNSI	RCATGY	4 cut(s)	1063, 1660, 2213, 2314
BstPI	GGTNACC	1 cut(s)	1739
BstSCI	CCNGG	9 cut(s)	146, 366, 657, 1040, 1154, 1626, 1743, 1744, 2465
BstSFI	CTRYAG	4 cut(s)	601, 872, 1753, 2233
BstSLI	GKGCMC	1 cut(s)	1145
BstUI	CGCG	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	1464
BstX2I	RGATCY	2 cut(s)	223, 2656
BstXI	CCANNNNNNTGG	2 cut(s)	1112, 2377
BstYI	RGATCY	2 cut(s)	223, 2656
BstZI	CGGCCG	1 cut(s)	696
Bsu36I	CCTNAGG	1 cut(s)	2754
BsuRI	GGCC	3 cut(s)	698, 1261, 2103
BtgI	CCRYGG	3 cut(s)	473, 1778, 2392
BtrI	CACGTC	1 cut(s)	1021
BtsCI	GGATG	4 cut(s)	36, 606, 1942, 1978
BtsI	GCAGTG	1 cut(s)	2155
BtsIMutI	CAGTG	4 cut(s)	1845, 1972, 2088, 2155
Cac8I	GCNNGC	6 cut(s)	193, 297, 1296, 1658, 1787, 2487
CfoI	GCGC	1 cut(s)	1300
Cfr10I	RCCGGY	1 cut(s)	968
Cfr13I	GGNCC	4 cut(s)	211, 306, 971, 1259
Cfr9I	CCCGGG	1 cut(s)	1744
CpoI	CGGWCCG	1 cut(s)	211
CseI	GACGC	2 cut(s)	815, 2348
Csp6I	GTAC	8 cut(s)	324, 351, 952, 1443, 1694, 1845, 2621, 2933
CspAI	ACCGGT	1 cut(s)	968
CspI	CGGWCCG	1 cut(s)	211
CviQI	GTAC	8 cut(s)	324, 351, 952, 1443, 1694, 1845, 2621, 2933
DdeI	CTNAG	9 cut(s)	776, 813, 981, 1646, 1652, 1837, 2181, 2754, 2825
DpnI	GATC	7 cut(s)	225, 537, 1665, 1905, 2094, 2301, 2658
DpnII	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
EaeI	YGGCCR	2 cut(s)	696, 2101
EagI	CGGCCG	1 cut(s)	696
Eam1104I	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
EarI	CTCTTC	8 cut(s)	47, 56, 143, 258, 906, 2588, 2705, 2763
EciI	GGCGGA	1 cut(s)	1041
Ecl136II	GAGCTC	2 cut(s)	736, 2199
EclXI	CGGCCG	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	610, 2392
Eco24I	GRGCYC	5 cut(s)	545, 738, 1571, 2201, 2487
Eco31I	GGTCTC	2 cut(s)	255, 1754
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	3 cut(s)	211, 306, 971
Eco52I	CGGCCG	1 cut(s)	696
Eco53kI	GAGCTC	2 cut(s)	736, 2199
Eco57I	CTGAAG	3 cut(s)	1082, 1948, 2729
Eco81I	CCTNAGG	1 cut(s)	2754
Eco88I	CYCGRG	5 cut(s)	578, 794, 1744, 2135, 2254
Eco91I	GGTNACC	1 cut(s)	1739
EcoICRI	GAGCTC	2 cut(s)	736, 2199
EcoO65I	GGTNACC	1 cut(s)	1739
EcoRI	GAATTC	1 cut(s)	1585
EcoRII	CCWGG	3 cut(s)	146, 366, 657
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	2 cut(s)	610, 2392
EcoT38I	GRGCYC	5 cut(s)	545, 738, 1571, 2201, 2487
ErhI	CCWWGG	2 cut(s)	610, 2392
Esp3I	CGTCTC	1 cut(s)	2134
FaqI	GGGAC	7 cut(s)	164, 406, 1057, 1087, 1439, 2351, 2684
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	2081
FblI	GTMKAC	2 cut(s)	2034, 2268
FokI	GGATG	4 cut(s)	23, 593, 1949, 1985
FriOI	GRGCYC	5 cut(s)	545, 738, 1571, 2201, 2487
FspBI	CTAG	6 cut(s)	2048, 2244, 2408, 2633, 2811, 2916
FspI	TGCGCA	1 cut(s)	1299
GlaI	GCGC	1 cut(s)	1299
GsaI	CCCAGC	2 cut(s)	136, 1559
GsuI	CTGGAG	4 cut(s)	449, 680, 705, 752
HaeIII	GGCC	3 cut(s)	698, 1261, 2103
HgaI	GACGC	2 cut(s)	815, 2348
HhaI	GCGC	1 cut(s)	1300
Hin1I	GRCGYC	1 cut(s)	807
Hin6I	GCGC	1 cut(s)	1298
HinP1I	GCGC	1 cut(s)	1298
HincII	GTYRAC	3 cut(s)	1152, 1168, 1359
HindII	GTYRAC	3 cut(s)	1152, 1168, 1359
HindIII	AAGCTT	5 cut(s)	761, 932, 1292, 2290, 2327
Hpy99I	CGWCG	6 cut(s)	83, 203, 809, 1022, 1150, 1811
HpyAV	CCTTC	8 cut(s)	821, 1250, 1888, 1915, 1972, 2161, 2270, 2841
HpyCH4III	ACNGT	7 cut(s)	323, 350, 956, 1782, 1849, 1913, 2549
HpyCH4IV	ACGT	4 cut(s)	201, 1020, 1148, 2192
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
HpyF3I	CTNAG	9 cut(s)	776, 813, 981, 1646, 1652, 1837, 2181, 2754, 2825
HpySE526I	ACGT	4 cut(s)	201, 1020, 1148, 2192
Hsp92I	GRCGYC	1 cut(s)	807
HspAI	GCGC	1 cut(s)	1298
Kzo9I	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	5 cut(s)	430, 733, 2363, 2563, 2629
LweI	GCATC	6 cut(s)	442, 615, 1568, 1649, 2121, 2167
MaeI	CTAG	6 cut(s)	2048, 2244, 2408, 2633, 2811, 2916
MaeII	ACGT	4 cut(s)	201, 1020, 1148, 2192
MaeIII	GTNAC	9 cut(s)	521, 956, 1313, 1739, 2043, 2435, 2549, 2570, 2635
MalI	GATC	7 cut(s)	225, 537, 1665, 1905, 2094, 2301, 2658
MboI	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
MfeI	CAATTG	2 cut(s)	1106, 1436
MflI	RGATCY	2 cut(s)	223, 2656
MhlI	GDGCHC	8 cut(s)	545, 738, 1145, 1571, 1787, 2123, 2201, 2487
MlyI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
MmeI	TCCRAC	7 cut(s)	87, 240, 981, 1005, 1830, 2341, 2358
MroXI	GAANNNNTTC	1 cut(s)	2228
MseI	TTAA	3 cut(s)	570, 1886, 2937
MslI	CAYNNNNRTG	7 cut(s)	491, 1019, 2129, 2214, 2313, 2397, 2421
MspA1I	CMGCKG	4 cut(s)	453, 730, 877, 1087
MspCI	CTTAAG	1 cut(s)	2936
MspR9I	CCNGG	9 cut(s)	148, 368, 659, 1042, 1156, 1628, 1745, 1746, 2467
MunI	CAATTG	2 cut(s)	1106, 1436
MvaI	CCWGG	3 cut(s)	148, 368, 659
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	9 cut(s)	74, 583, 718, 727, 733, 1093, 1133, 2363, 2821
NciI	CCSGG	6 cut(s)	1042, 1156, 1628, 1745, 1746, 2467
NcoI	CCATGG	1 cut(s)	2392
NdeI	CATATG	1 cut(s)	2081
NdeII	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
NlaIV	GGNNCC	3 cut(s)	307, 1194, 1690
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	3 cut(s)	521, 2043, 2635
NsbI	TGCGCA	1 cut(s)	1299
NspI	RCATGY	4 cut(s)	1063, 1660, 2213, 2314
NspV	TTCGAA	3 cut(s)	1244, 1352, 2159
OliI	CACNNNNGTG	1 cut(s)	2313
PaeI	GCATGC	1 cut(s)	1660
PaeR7I	CTCGAG	3 cut(s)	578, 794, 2254
PciI	ACATGT	2 cut(s)	1059, 2310
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 801
PdmI	GAANNNNTTC	1 cut(s)	2228
PflFI	GACNNNGTC	1 cut(s)	1811
PflMI	CCANNNNNTGG	2 cut(s)	723, 2666
PfoI	TCCNGGA	1 cut(s)	1626
PinAI	ACCGGT	1 cut(s)	968
PleI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
PpsI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
PscI	ACATGT	2 cut(s)	1059, 2310
Psp124BI	GAGCTC	2 cut(s)	738, 2201
Psp6I	CCWGG	3 cut(s)	146, 366, 657
PspEI	GGTNACC	1 cut(s)	1739
PspFI	CCCAGC	2 cut(s)	132, 1555
PspGI	CCWGG	3 cut(s)	146, 366, 657
PspN4I	GGNNCC	3 cut(s)	307, 1194, 1690
PspPI	GGNCC	4 cut(s)	211, 306, 971, 1259
PspXI	VCTCGAGB	2 cut(s)	578, 2254
PstI	CTGCAG	4 cut(s)	605, 876, 1757, 2237
PsuI	RGATCY	2 cut(s)	223, 2656
PsyI	GACNNNGTC	1 cut(s)	1811
PvuII	CAGCTG	4 cut(s)	453, 730, 877, 1087
RsaI	GTAC	8 cut(s)	325, 352, 953, 1444, 1695, 1846, 2622, 2934
RsaNI	GTAC	8 cut(s)	324, 351, 952, 1443, 1694, 1845, 2621, 2933
RseI	CAYNNNNRTG	7 cut(s)	491, 1019, 2129, 2214, 2313, 2397, 2421
Rsr2I	CGGWCCG	1 cut(s)	211
RsrII	CGGWCCG	1 cut(s)	211
SacI	GAGCTC	2 cut(s)	738, 2201
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	570, 1886, 2937
Sau3AI	GATC	7 cut(s)	223, 535, 1663, 1903, 2092, 2299, 2656
Sau96I	GGNCC	4 cut(s)	211, 306, 971, 1259
ScaI	AGTACT	2 cut(s)	2622, 2934
SchI	GAGTC	6 cut(s)	116, 146, 257, 2246, 2513, 2735
ScrFI	CCNGG	9 cut(s)	148, 368, 659, 1042, 1156, 1628, 1745, 1746, 2467
SduI	GDGCHC	8 cut(s)	545, 738, 1145, 1571, 1787, 2123, 2201, 2487
SfaNI	GCATC	6 cut(s)	442, 615, 1568, 1649, 2121, 2167
SfcI	CTRYAG	4 cut(s)	601, 872, 1753, 2233
Sfr274I	CTCGAG	3 cut(s)	578, 794, 2254
SfuI	TTCGAA	3 cut(s)	1244, 1352, 2159
SinI	GGWCC	3 cut(s)	211, 306, 971
SlaI	CTCGAG	3 cut(s)	578, 794, 2254
SmaI	CCCGGG	1 cut(s)	1746
SmiMI	CAYNNNNRTG	7 cut(s)	491, 1019, 2129, 2214, 2313, 2397, 2421
SmlI	CTYRAG	5 cut(s)	340, 578, 794, 2254, 2936
SmoI	CTYRAG	5 cut(s)	340, 578, 794, 2254, 2936
SpeI	ACTAGT	1 cut(s)	2243
SphI	GCATGC	1 cut(s)	1660
SsiI	CCGC	7 cut(s)	69, 72, 159, 392, 1052, 2474, 2700
SspI	AATATT	1 cut(s)	1854
SspMI	CTAG	6 cut(s)	2048, 2244, 2408, 2633, 2811, 2916
SstI	GAGCTC	2 cut(s)	738, 2201
StyD4I	CCNGG	9 cut(s)	146, 366, 657, 1040, 1154, 1626, 1743, 1744, 2465
StyI	CCWWGG	2 cut(s)	610, 2392
TaaI	ACNGT	7 cut(s)	323, 350, 956, 1782, 1849, 1913, 2549
TaiI	ACGT	4 cut(s)	204, 1023, 1151, 2195
TaqII	GACCGA	1 cut(s)	199
TatI	WGTACW	2 cut(s)	2620, 2932
TauI	GCSGC	3 cut(s)	71, 74, 2703
Tru1I	TTAA	3 cut(s)	570, 1886, 2937
Tru9I	TTAA	3 cut(s)	570, 1886, 2937
TscAI	CASTG	4 cut(s)	1845, 1972, 2095, 2155
TseFI	GTSAC	3 cut(s)	521, 2043, 2635
Tsp45I	GTSAC	3 cut(s)	521, 2043, 2635
TspDTI	ATGAA	8 cut(s)	387, 428, 1003, 1094, 1905, 2339, 2405, 2894
TspGWI	ACGGA	2 cut(s)	246, 347
TspMI	CCCGGG	1 cut(s)	1744
TspRI	CASTG	4 cut(s)	1845, 1972, 2095, 2155
Tth111I	GACNNNGTC	1 cut(s)	1811
Van91I	CCANNNNNTGG	2 cut(s)	723, 2666
Vha464I	CTTAAG	1 cut(s)	2936
VneI	GTGCAC	1 cut(s)	1141
VpaK11BI	GGWCC	3 cut(s)	211, 306, 971
XapI	RAATTY	6 cut(s)	176, 690, 817, 1119, 1585, 2171
XceI	RCATGY	4 cut(s)	1063, 1660, 2213, 2314
XhoI	CTCGAG	3 cut(s)	578, 794, 2254
XmaI	CCCGGG	1 cut(s)	1744
XmiI	GTMKAC	2 cut(s)	2034, 2268
XmnI	GAANNNNTTC	1 cut(s)	2228
XspI	CTAG	6 cut(s)	2048, 2244, 2408, 2633, 2811, 2916
ZrmI	AGTACT	2 cut(s)	2622, 2934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.