Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

36626694 .. 36627980

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGAGCAGCAGCGAGGGTTTGGATGAGCACTCTGGTGGTGGTGATGGCGGTGTTGGTGTTTGGACTTGGGGACTGCGCGGCGCCGGCTCCTTCGGTGGACTGCTCGAGCCTGATCTTGAACATGGCGGACTGCTTGTCGTTTGTGTCGAATGGGAGCACGGAAACGAAGCCGGCAGGGACTTGCTGCAGTGGCCTCAAGACTGTGCTCAAAGCCGACGCTTCCTGCCTCTGTGAGGCCTTCAAGAGCAGTGCTCAGCTCGGCGTCGTTTTGAACATCACCAAGGCCACCTCCCTCCCCGCCGCTTGCAAAGTCTCCGCTCCTTCTGCCGCCAGCTGTGCATCATCTATCAGTCCTGCTGGTGCTCCTGGTGGAGCAACTACCTCGCCGGCACCTTCTCCAACTTCAGGTGCTGACATTGGTGGTGCACCAGCGTCGTCGACTGCTGGAGGGGAGCAAACAACACCTGCTGCATCTCCTCAGGGAAGCTCAGGTTCTCTTATGCTTGCTAGTTCGGTTGGATCCCTACTTGTTGGTCTTGTAATTGCATCATTCCCTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

189

Amino Acids

17.95

Weight (kDa)

5.09

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	28 - 113	2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	35 - 113	5.4e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	2 cut(s)	82, 391
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	80
AciI	CCGC	7 cut(s)	50, 80, 128, 300, 303, 318, 330
AclWI	GGATC	2 cut(s)	516, 529
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	2 cut(s)	83, 264
AfiI	CCNNNNNNNGG	2 cut(s)	235, 407
AgsI	TTSAA	3 cut(s)	121, 244, 274
AhdI	GACNNNNNGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	259, 336, 489
AluI	AGCT	3 cut(s)	259, 336, 489
Alw21I	GWGCWC	6 cut(s)	32, 161, 210, 256, 367, 430
Alw26I	GTCTC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	516, 529
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	3 cut(s)	193, 237, 285
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	8, 11, 186, 470
AspLEI	GCGC	2 cut(s)	80, 85
AsuHPI	GGTGA	2 cut(s)	55, 271
AvaI	CYCGRG	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	521
BanI	GGYRCC	2 cut(s)	82, 391
Bbv12I	GWGCWC	6 cut(s)	32, 161, 210, 256, 367, 430
BbvI	GCAGC	4 cut(s)	20, 23, 173, 457
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	4 cut(s)	366, 400, 417, 451
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	7 cut(s)	9, 12, 81, 187, 303, 330, 471
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	7 cut(s)	10, 13, 82, 188, 304, 331, 472
Bme1390I	CCNGG	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	106
BmiI	GGNNCC	4 cut(s)	84, 90, 393, 523
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	350, 482, 557
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	490
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	83, 264
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 407
Bse118I	RCCGGY	3 cut(s)	85, 172, 388
Bse21I	CCTNAGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	235, 407
BseMII	CTCAG	3 cut(s)	269, 494, 504
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	4 cut(s)	20, 23, 173, 457
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	195, 239, 287
BshNI	GGYRCC	2 cut(s)	82, 391
BsiHKAI	GWGCWC	6 cut(s)	32, 161, 210, 256, 367, 430
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	86, 173, 389
BslFI	GGGAC	2 cut(s)	86, 193
BslI	CCNNNNNNNGG	2 cut(s)	235, 407
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	86, 193
BsnI	GGCC	3 cut(s)	195, 239, 287
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	6 cut(s)	32, 161, 210, 256, 367, 430
Bsp143I	GATC	2 cut(s)	114, 521
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	7 cut(s)	50, 80, 128, 300, 303, 318, 330
BspANI	GGCC	3 cut(s)	195, 239, 287
BspCNI	CTCAG	3 cut(s)	268, 493, 503
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	84, 90, 393, 523
BspMAI	CTGCAG	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	516, 529
BspT107I	GGYRCC	2 cut(s)	82, 391
BsrBI	CCGCTC	1 cut(s)	320
BsrFI	RCCGGY	3 cut(s)	85, 172, 388
BssAI	RCCGGY	3 cut(s)	85, 172, 388
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	114, 521
BssNI	GRCGYC	2 cut(s)	83, 264
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	2 cut(s)	83, 264
BstC8I	GCNNGC	6 cut(s)	87, 174, 307, 334, 390, 507
BstDEI	CTNAG	3 cut(s)	255, 480, 490
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	80, 85
BstKTI	GATC	2 cut(s)	117, 524
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	114, 521
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 192, 326, 338
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	4 cut(s)	20, 23, 173, 457
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	195, 239, 287
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	2 cut(s)	196, 256
BtsIMutI	CAGTG	2 cut(s)	196, 256
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	6 cut(s)	87, 174, 307, 334, 390, 507
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	2 cut(s)	80, 85
Cfr10I	RCCGGY	3 cut(s)	85, 172, 388
CseI	GACGC	3 cut(s)	227, 253, 423
CviAII	CATG	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	255, 480, 490
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	2 cut(s)	116, 523
DpnII	GATC	2 cut(s)	114, 521
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	127
FaiI	YATR	2 cut(s)	125, 503
FaqI	GGGAC	2 cut(s)	86, 193
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	7 cut(s)	9, 12, 81, 187, 303, 330, 471
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	7 cut(s)	9, 12, 81, 187, 303, 330, 471
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	79, 84
GluI	GCNGC	7 cut(s)	9, 12, 81, 187, 303, 330, 471
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	195, 239, 287
HapII	CCGG	3 cut(s)	86, 173, 389
HgaI	GACGC	3 cut(s)	227, 253, 423
HhaI	GCGC	2 cut(s)	80, 85
Hin1I	GRCGYC	2 cut(s)	83, 264
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	78, 83
HinP1I	GCGC	2 cut(s)	78, 83
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HpaII	CCGG	3 cut(s)	86, 173, 389
HphI	GGTGA	2 cut(s)	55, 271
Hpy166II	GTNNAC	3 cut(s)	100, 428, 441
Hpy188I	TCNGA	1 cut(s)	566
Hpy188III	TCNNGA	3 cut(s)	118, 199, 244
Hpy8I	GTNNAC	3 cut(s)	100, 428, 441
Hpy99I	CGWCG	4 cut(s)	221, 269, 439, 442
HpyAV	CCTTC	4 cut(s)	102, 250, 333, 405
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	189, 309, 341, 428, 473, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 192, 326, 338
HpyF3I	CTNAG	3 cut(s)	255, 480, 490
Hsp92I	GRCGYC	2 cut(s)	83, 264
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	78, 83
KasI	GGCGCC	1 cut(s)	82
KroI	GCCGGC	3 cut(s)	85, 172, 388
KroNI	GCCGGC	3 cut(s)	87, 174, 390
Kzo9I	GATC	2 cut(s)	114, 521
LmnI	GCTCC	7 cut(s)	5, 94, 156, 325, 370, 374, 454
Lsp1109I	GCAGC	4 cut(s)	20, 23, 173, 457
LweI	GCATC	3 cut(s)	350, 482, 557
MaeI	CTAG	1 cut(s)	510
MalI	GATC	2 cut(s)	116, 523
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	2 cut(s)	114, 521
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	6 cut(s)	32, 161, 210, 256, 367, 430
MluCI	AATT	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	425, 499
MnlI	CCTC	9 cut(s)	9, 206, 229, 239, 301, 305, 394, 443, 489
MroNI	GCCGGC	3 cut(s)	85, 172, 388
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	3 cut(s)	86, 173, 389
MspR9I	CCNGG	1 cut(s)	369
MteI	GCGCNGCGC	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	86, 192, 326, 338
NaeI	GCCGGC	3 cut(s)	87, 174, 390
NarI	GGCGCC	1 cut(s)	83
NdeII	GATC	2 cut(s)	114, 521
NgoMIV	GCCGGC	3 cut(s)	85, 172, 388
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	4 cut(s)	84, 90, 393, 523
NmeAIII	GCCGAG	1 cut(s)	240
OliI	CACNNNNGTG	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdiI	GCCGGC	3 cut(s)	87, 174, 390
PkrI	GCNGC	7 cut(s)	10, 13, 82, 188, 304, 331, 472
PluTI	GGCGCC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	84, 90, 393, 523
PspXI	VCTCGAGB	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	439
SatI	GCNGC	7 cut(s)	9, 12, 81, 187, 303, 330, 471
Sau3AI	GATC	2 cut(s)	114, 521
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	6 cut(s)	32, 161, 210, 256, 367, 430
SetI	ASST	9 cut(s)	261, 293, 338, 386, 397, 412, 469, 491, 496
SfaNI	GCATC	3 cut(s)	350, 482, 557
SfcI	CTRYAG	1 cut(s)	187
SfoI	GGCGCC	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	106, 197
SmoI	CTYRAG	2 cut(s)	106, 197
Sse9I	AATT	1 cut(s)	543
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	7 cut(s)	50, 80, 128, 300, 303, 318, 330
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	107, 149, 440
TasI	AATT	1 cut(s)	543
TauI	GCSGC	3 cut(s)	83, 305, 332
TscAI	CASTG	2 cut(s)	196, 256
TseI	GCWGC	4 cut(s)	8, 11, 186, 470
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	196, 256
VneI	GTGCAC	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.