pycom15g37440

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
37399008 .. 37403647
4640 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
ATGGGGAAGGGTGAAGCAAATCTGCACCAGCAGCAGCAGAGTGACGGGGGTCAGAATGCTTCGGGACTCGTCTGTCCTGGGTGTTCGACGGTTTTCGACCGAATCGCCAAAGGCTTGAGCTTTAGATGCGTCTTCGTTTTAATTCTCAGTTTATCAGTATTTCTCTCTGGGATCTTCTGGATCCTTCCTCGCCATGCTACCAACTCTGGGTTTGATGCTACACAGGCAATTAAGCTTAGTGCCACGGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTATGGACCTTGTTCCACACATTGGAAGATTAGAATATGATATCAATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATCTTGTCTATGCACCAATTTCATGCATATAATTGGACTGAAGTGGTGTTTGGTTTTCTTTCCGATCCAATAAATGTTCCAATAGCTCCTGTGTCCTTAAGTGTGCTGAGGTCATCCTTAGTTGAGCTTTTCCTTAAGCAATCCAATCTTACACTGACTACATCAGTTTTCGGGCAGCCATCTACATTGGAGATTCTGAAGTATCCGGGGGGAATTACTGTGATTCCTGGTCAACCTGCTTCAATCTGGCAGTTACCCCTGATTTTATTTAATTTTACTCTCAATAACTGTATAGATGATATAGTGGAAAATTTTGGCGAGTTAAAGGAGCAGTTGAAGTTTGGATTGCACCTAAGGCCTTATGAGAACGTATTTTTGCAAATAACAAACACAATGGGTTCAACAACAACATCCCCAGTTGTTGTTCAAGCTTCTCTAATGTCTGAGTTTGGAGGCTTTGTGCCCCAGAGATTAAGGCAGTTGGCTCAAACAATCACTGGCTCTCCTGCAAAAAATCTTGGCCTGGATAACTCAGTCTTTGGTAAAGTTAAAAGTATCAGTTTATCTTCTTGTCTGAAAGATACACTCTCCGCAACCCCTCCAACTGCTTCTCCAGCTCCATCTCCAGAGCCATCAATTTCTCCCTATCTTGCTTCTCCAGTTTACGCTCCAGCACCCTCACCTGACATTGGTCATCTCTCACCAGCACCATCCAAGGTACCCGCACATTCTCGTCCATGTCCACTCCAGGGTTCTAGAATTCCTCCATCCTCCTCGCCAACTTCTCGTTCTTACCCTACCGTTCCTCCTACATATCCTCCTAGATTTCCTCCATCCTCCTCACCACCTTCATCTCAATTGTCCCCGCATGTTCCACCTGCTCCCAAAGTGTCTTATGCTCCCAGTCCAGAAGACAAGGAAAGTGCACAAGACTTGACGTCTTCATCACCTGGCCCATCGCTGTCGTCTTTAGCAGTAGGACCTTGGAACAAGGAGATCCGGTTATTGGAACTTTCAGGAGTCTTCATCTTTCTTCTCGTTTGTTGGTCGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

50.46

Weight (kDa)

8.11

Isoelectric Point (pI)

65.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 86 - 177 1.6e-28 Domain of unknown function (DUF7036)
DUF7036 PF23041 210 - 300 3.7e-20 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1243
AasI GACNNNNNNGTC 1 cut(s) 72
AatII GACGTC 1 cut(s) 1298
Acc36I ACCTGC 2 cut(s) 601, 1243
Acc65I GGTACC 1 cut(s) 1075
AccB1I GGYRCC 1 cut(s) 1075
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 1408
AciI CCGC 4 cut(s) 948, 1080, 1223, 1408
AclWI GGATC 5 cut(s) 175, 179, 188, 416, 1348
AcsI RAATTY 2 cut(s) 667, 1116
AcuI CTGAAG 3 cut(s) 244, 417, 575
AcyI GRCGYC 1 cut(s) 1295
AfaI GTAC 2 cut(s) 346, 1077
AfiI CCNNNNNNNGG 5 cut(s) 207, 299, 1046, 1106, 1363
AflII CTTAAG 2 cut(s) 454, 491
AgsI TTSAA 4 cut(s) 600, 694, 759, 785
AhdI GACNNNNNGTC 1 cut(s) 1294
AjnI CCWGG 6 cut(s) 76, 340, 583, 879, 1104, 1306
AjuI GAANNNNNNNTTGG 4 cut(s) 390, 422, 1129, 1161
AluBI AGCT 6 cut(s) 120, 235, 443, 484, 788, 974
AluI AGCT 6 cut(s) 120, 235, 443, 484, 788, 974
Alw21I GWGCWC 1 cut(s) 1285
Alw44I GTGCAC 1 cut(s) 1281
AlwI GGATC 5 cut(s) 175, 179, 188, 416, 1348
AoxI GGCC 3 cut(s) 713, 877, 1309
ApaLI GTGCAC 1 cut(s) 1281
ApeKI GCWGC 3 cut(s) 31, 34, 532
ApoI RAATTY 2 cut(s) 667, 1116
Asp718I GGTACC 1 cut(s) 1075
AspS9I GGNCC 3 cut(s) 283, 1310, 1337
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 5 cut(s) 23, 1029, 1050, 1191, 1296
AvaII GGWCC 2 cut(s) 283, 1337
AxyI CCTNAGG 1 cut(s) 710
BaeGI GKGCMC 2 cut(s) 822, 1285
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BamHI GGATCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 1075
BbsI GAAGAC 4 cut(s) 124, 1275, 1290, 1372
Bbv12I GWGCWC 1 cut(s) 1285
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 43, 46, 544
BccI CCATC 7 cut(s) 544, 985, 997, 1075, 1132, 1198, 1321
BciT130I CCWGG 6 cut(s) 78, 342, 585, 881, 1106, 1308
BciVI GTATCC 1 cut(s) 570
BcnI CCSGG 1 cut(s) 564
BfaI CTAG 2 cut(s) 1113, 1179
BfrI CTTAAG 2 cut(s) 454, 491
BfuAI ACCTGC 2 cut(s) 601, 1243
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 3 cut(s) 32, 35, 533
BlsI GCNGC 3 cut(s) 33, 36, 534
Bme1390I CCNGG 7 cut(s) 78, 342, 564, 585, 881, 1106, 1308
Bme18I GGWCC 2 cut(s) 283, 1337
BmeRI GACNNNNNGTC 1 cut(s) 1294
BmgT120I GGNCC 3 cut(s) 283, 1310, 1337
BmiI GGNNCC 2 cut(s) 182, 1077
BmrFI CCNGG 7 cut(s) 78, 342, 564, 585, 881, 1106, 1308
BmrI ACTGGG 2 cut(s) 767, 1254
BmsI GCATC 2 cut(s) 116, 205
BmuI ACTGGG 2 cut(s) 767, 1254
BoxI GACNNNNGTC 2 cut(s) 48, 1047
BpiI GAAGAC 4 cut(s) 124, 1275, 1290, 1372
BpmI CTGGAG 5 cut(s) 954, 966, 999, 1011, 1088
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 1295
BsaJI CCNNGG 7 cut(s) 77, 243, 340, 563, 1071, 1105, 1340
BsaWI WCCGGW 1 cut(s) 1356
Bsc4I CCNNNNNNNGG 5 cut(s) 207, 299, 1046, 1106, 1363
Bse1I ACTGG 6 cut(s) 270, 275, 773, 859, 1016, 1260
Bse21I CCTNAGG 1 cut(s) 710
BseBI CCWGG 6 cut(s) 78, 342, 585, 881, 1106, 1308
BseDI CCNNGG 7 cut(s) 77, 243, 340, 563, 1071, 1105, 1340
BseGI GGATG 5 cut(s) 470, 767, 1067, 1124, 1190
BseLI CCNNNNNNNGG 5 cut(s) 207, 299, 1046, 1106, 1363
BseMII CTCAG 4 cut(s) 160, 455, 792, 903
BseNI ACTGG 6 cut(s) 270, 275, 773, 859, 1016, 1260
BseRI GAGGAG 2 cut(s) 1120, 1186
BseSI GKGCMC 2 cut(s) 822, 1285
BseXI GCAGC 3 cut(s) 43, 46, 544
BsgI GTGCAG 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 1408
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 715, 879, 1311
BshNI GGYRCC 1 cut(s) 1075
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 1285
BsiSI CCGG 2 cut(s) 563, 1357
BslFI GGGAC 3 cut(s) 78, 323, 1204
BslI CCNNNNNNNGG 5 cut(s) 207, 299, 1046, 1106, 1363
BsmFI GGGAC 3 cut(s) 78, 323, 1204
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 3 cut(s) 715, 879, 1311
Bsp1286I GDGCHC 2 cut(s) 822, 1285
Bsp143I GATC 4 cut(s) 171, 180, 421, 1353
BspACI CCGC 4 cut(s) 948, 1080, 1223, 1408
BspANI GGCC 3 cut(s) 715, 879, 1311
BspCNI CTCAG 4 cut(s) 159, 456, 793, 902
BspFNI CGCG 1 cut(s) 1408
BspLI GGNNCC 2 cut(s) 182, 1077
BspMI ACCTGC 2 cut(s) 601, 1243
BspPI GGATC 5 cut(s) 175, 179, 188, 416, 1348
BspT107I GGYRCC 1 cut(s) 1075
BspTI CTTAAG 2 cut(s) 454, 491
BsrI ACTGG 6 cut(s) 270, 275, 773, 859, 1016, 1260
BssECI CCNNGG 7 cut(s) 77, 243, 340, 563, 1071, 1105, 1340
BssMI GATC 4 cut(s) 171, 180, 421, 1353
BssNI GRCGYC 1 cut(s) 1295
BssT1I CCWWGG 2 cut(s) 1071, 1340
Bst2UI CCWGG 6 cut(s) 78, 342, 585, 881, 1106, 1308
Bst4CI ACNGT 5 cut(s) 91, 247, 577, 647, 1159
BstACI GRCGYC 1 cut(s) 1295
BstAFI CTTAAG 2 cut(s) 454, 491
BstDEI CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 5 cut(s) 470, 767, 1067, 1124, 1190
BstFNI CGCG 1 cut(s) 1408
BstKTI GATC 4 cut(s) 174, 183, 424, 1356
BstMBI GATC 4 cut(s) 171, 180, 421, 1353
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 5 cut(s) 31, 126, 224, 712, 971
BstNI CCWGG 6 cut(s) 78, 342, 585, 881, 1106, 1308
BstNSI RCATGY 1 cut(s) 1229
BstPAI GACNNNNGTC 2 cut(s) 48, 1047
BstSCI CCNGG 7 cut(s) 76, 340, 562, 583, 879, 1104, 1306
BstSLI GKGCMC 2 cut(s) 822, 1285
BstUI CGCG 1 cut(s) 1408
BstV1I GCAGC 3 cut(s) 43, 46, 544
BstV2I GAAGAC 4 cut(s) 124, 1275, 1290, 1372
BstX2I RGATCY 3 cut(s) 171, 180, 1353
BstYI RGATCY 3 cut(s) 171, 180, 1353
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 3 cut(s) 715, 879, 1311
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 1299
BtsCI GGATG 5 cut(s) 470, 767, 1067, 1124, 1190
BtsIMutI CAGTG 2 cut(s) 509, 852
BveI ACCTGC 2 cut(s) 601, 1243
Cfr13I GGNCC 3 cut(s) 283, 1310, 1337
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 345, 1076
CviAII CATG 4 cut(s) 194, 380, 1095, 1226
CviQI GTAC 2 cut(s) 345, 1076
DdeI CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
DpnI GATC 4 cut(s) 173, 182, 423, 1355
DpnII GATC 4 cut(s) 171, 180, 421, 1353
DrdI GACNNNNNNGTC 1 cut(s) 72
DriI GACNNNNNGTC 1 cut(s) 1294
DseDI GACNNNNNNGTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 1294
Eco130I CCWWGG 2 cut(s) 1071, 1340
Eco147I AGGCCT 1 cut(s) 715
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 283, 1337
Eco57I CTGAAG 3 cut(s) 244, 417, 575
Eco81I CCTNAGG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 1337
EcoRI GAATTC 1 cut(s) 1116
EcoRII CCWGG 6 cut(s) 76, 340, 583, 879, 1104, 1306
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 1071, 1340
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 1071, 1340
FaeI CATG 4 cut(s) 197, 383, 1098, 1229
FaqI GGGAC 3 cut(s) 78, 323, 1204
FatI CATG 4 cut(s) 193, 379, 1094, 1225
FauI CCCGC 2 cut(s) 1087, 1230
Fnu4HI GCNGC 3 cut(s) 32, 35, 533
FokI GGATG 5 cut(s) 457, 754, 1054, 1111, 1177
Fsp4HI GCNGC 3 cut(s) 32, 35, 533
FspBI CTAG 2 cut(s) 1113, 1179
GluI GCNGC 3 cut(s) 32, 35, 533
GsuI CTGGAG 5 cut(s) 954, 966, 999, 1011, 1088
HaeIII GGCC 3 cut(s) 715, 879, 1311
HapII CCGG 2 cut(s) 563, 1357
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 1295
Hin1II CATG 4 cut(s) 197, 383, 1098, 1229
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HindIII AAGCTT 2 cut(s) 233, 786
HinfI GANTC 5 cut(s) 66, 102, 550, 580, 1377
HpaII CCGG 2 cut(s) 563, 1357
HphI GGTGA 5 cut(s) 23, 1029, 1050, 1191, 1296
Hpy166II GTNNAC 4 cut(s) 590, 1021, 1100, 1283
Hpy188I TCNGA 6 cut(s) 54, 263, 421, 555, 802, 933
Hpy188III TCNNGA 6 cut(s) 63, 178, 983, 1113, 1265, 1374
Hpy8I GTNNAC 4 cut(s) 590, 1021, 1100, 1283
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 194, 1215
HpyCH4III ACNGT 5 cut(s) 91, 247, 577, 647, 1159
HpyCH4IV ACGT 2 cut(s) 726, 1295
HpyCH4V TGCA 7 cut(s) 25, 370, 383, 706, 736, 866, 1283
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 126, 224, 712, 971
HpyF3I CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
HpySE526I ACGT 2 cut(s) 726, 1295
Hsp92I GRCGYC 1 cut(s) 1295
Hsp92II CATG 4 cut(s) 197, 383, 1098, 1229
KpnI GGTACC 1 cut(s) 1079
Kzo9I GATC 4 cut(s) 171, 180, 421, 1353
LmnI GCTCC 6 cut(s) 448, 685, 979, 1030, 1243, 1261
Lsp1109I GCAGC 3 cut(s) 43, 46, 544
LweI GCATC 2 cut(s) 116, 205
MaeI CTAG 2 cut(s) 1113, 1179
MaeII ACGT 2 cut(s) 726, 1295
MaeIII GTNAC 2 cut(s) 41, 609
MalI GATC 4 cut(s) 173, 182, 423, 1355
MboI GATC 4 cut(s) 171, 180, 421, 1353
MboII GAAGA 8 cut(s) 124, 166, 315, 915, 1280, 1290, 1372, 1382
MfeI CAATTG 1 cut(s) 1214
MflI RGATCY 3 cut(s) 171, 180, 1353
MhlI GDGCHC 2 cut(s) 822, 1285
MlyI GAGTC 2 cut(s) 60, 1386
MmeI TCCRAC 1 cut(s) 983
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 8 cut(s) 140, 231, 455, 492, 627, 680, 830, 906
MspCI CTTAAG 2 cut(s) 454, 491
MspI CCGG 2 cut(s) 563, 1357
MspR9I CCNGG 7 cut(s) 78, 342, 564, 585, 881, 1106, 1308
MunI CAATTG 1 cut(s) 1214
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 6 cut(s) 78, 342, 585, 881, 1106, 1308
MvnI CGCG 1 cut(s) 1408
MwoI GCNNNNNNNGC 5 cut(s) 31, 126, 224, 712, 971
NciI CCSGG 1 cut(s) 564
NdeII GATC 4 cut(s) 171, 180, 421, 1353
NlaIII CATG 4 cut(s) 197, 383, 1098, 1229
NlaIV GGNNCC 2 cut(s) 182, 1077
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 1 cut(s) 1229
PaqCI CACCTGC 1 cut(s) 1243
PceI AGGCCT 1 cut(s) 715
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 3 cut(s) 102, 550, 580
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 3 cut(s) 33, 36, 534
PleI GAGTC 2 cut(s) 60, 1385
PpsI GAGTC 2 cut(s) 60, 1385
PpuMI RGGWCCY 1 cut(s) 1337
PshAI GACNNNNGTC 2 cut(s) 48, 1047
Psp5II RGGWCCY 1 cut(s) 1337
Psp6I CCWGG 6 cut(s) 76, 340, 583, 879, 1104, 1306
PspGI CCWGG 6 cut(s) 76, 340, 583, 879, 1104, 1306
PspN4I GGNNCC 2 cut(s) 182, 1077
PspPI GGNCC 3 cut(s) 283, 1310, 1337
PspPPI RGGWCCY 1 cut(s) 1337
PsuI RGATCY 3 cut(s) 171, 180, 1353
RsaI GTAC 2 cut(s) 346, 1077
RsaNI GTAC 2 cut(s) 345, 1076
SaqAI TTAA 8 cut(s) 140, 231, 455, 492, 627, 680, 830, 906
SatI GCNGC 3 cut(s) 32, 35, 533
Sau3AI GATC 4 cut(s) 171, 180, 421, 1353
Sau96I GGNCC 3 cut(s) 283, 1310, 1337
SchI GAGTC 2 cut(s) 60, 1386
ScrFI CCNGG 7 cut(s) 78, 342, 564, 585, 881, 1106, 1308
SduI GDGCHC 2 cut(s) 822, 1285
SfaNI GCATC 2 cut(s) 116, 205
SinI GGWCC 2 cut(s) 283, 1337
SmlI CTYRAG 3 cut(s) 115, 454, 491
SmoI CTYRAG 3 cut(s) 115, 454, 491
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 4 cut(s) 948, 1080, 1223, 1408
SspMI CTAG 2 cut(s) 1113, 1179
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 7 cut(s) 76, 340, 562, 583, 879, 1104, 1306
StyI CCWWGG 2 cut(s) 1071, 1340
TaaI ACNGT 5 cut(s) 91, 247, 577, 647, 1159
TaiI ACGT 2 cut(s) 729, 1298
TaqI TCGA 2 cut(s) 86, 96
TaqII GACCGA 1 cut(s) 114
TfiI GAWTC 3 cut(s) 102, 550, 580
Tru1I TTAA 8 cut(s) 140, 231, 455, 492, 627, 680, 830, 906
Tru9I TTAA 8 cut(s) 140, 231, 455, 492, 627, 680, 830, 906
TscAI CASTG 2 cut(s) 516, 859
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 3 cut(s) 31, 34, 532
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 368, 1197, 1290, 1372
TspRI CASTG 2 cut(s) 516, 859
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 2 cut(s) 454, 491
VneI GTGCAC 1 cut(s) 1281
VpaK11BI GGWCC 2 cut(s) 283, 1337
XapI RAATTY 2 cut(s) 667, 1116
XbaI TCTAGA 1 cut(s) 1112
XceI RCATGY 1 cut(s) 1229
XspI CTAG 2 cut(s) 1113, 1179
ZraI GACGTC 1 cut(s) 1296
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.