Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004641

Physical Location & Seq

Genomic Coordinates Forward (+)

37601882 .. 37602736

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGCGCCGCCATGGCCACCCGCCTTCTCTCCGCCGGCTACTCCGTCACCGTCTACGCTCGCACTCCTTCCAAAGCTCAACCGCTACAGTCCCTCGGTGTCCAACTCGCCGATTTCCCTTTTCATCTTGCTCAGCTATGCGACGTCGTCTTCACCATGGTGGGACACCCACAAGATGTGCGATCAAATGTCCTCCACCCAGAAACCGGCATTCTCTCCGGCATTAGTCCCAACTCCGTCACCGTCGACATGACTAGCAGTCATCCGGCCCTTGCGCGCGAGATATTCACTGCTGCGCGAGCCAAAAATTGTTGGTCTGTCGATGCGCCGGTGTCGGGTGGTGACATTGGGGCTAGAGAAGGCAAACTCGCCATTCTTGCGGGAGGTGATGCTTCCGTTGTCGAGTGGTTGGCCCCGTTGTTTGACATTTTGGGGAAGGCTACTTATGTGGGGCCTGCCGGTTCTGGCCAGAGTTGCAAGATTGCGAACCAGATTGTAGTGGGAGGGAATTTGCTGGGACTGAGTGAAGGGTTGGTGTTTGCAGAGCAGGCGGGGTTGGATGTGCGGCAGTTTATGGAGGCGGTGAGGGGCGGGGCCGCGGGGTCAATGGTGATGGAGTTGTTTGGGGAGAGGATGATTGGGAGGGACTTCAGGCCTGGTGGGTTTGCTGAGTATATGGTGAAGGATTTGGGAATGGGTGTGGATGTTGTGGAGGAGAGTGAGGATGAGAGCGTGGTGGTGTTGCCTGGTGCTGCATTGTGCAAGCAGTTATATTCCGGCATGGTGGCGAATGGAGACGGGAAGCTTGGAACTCAAGGTCTTATCACTGCCATAGAGAGGCTCAATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

285

Amino Acids

29.56

Weight (kDa)

5.04

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	1 - 150	2.9e-38	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	154 - 276	8e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71170 AT1G71180
fragaria_vesca	FvH4_5g29271
malus_domestica	MD15G1424900.v1.1 MD15G1425100.v1.1
prunus_persica	Prupe.1G570400_v2.0.a1 Prupe.1G570500_v2.0.a1
pyrus_communis	pycom15g37670 pycom15g37680
rosa_chinensis	RchiOBHm_Chr7g0222121
rosa_laevigata	RLG00000002095 RLG00000002096
rosa_multiflora	Rmu_co8329643.1_g000001 Rmu_co8348273.1_g000001 Rmu_sc0006951.1_g000005 Rmu_sc0006951.1_g000006 Rmu_sc0020366.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237440 Rroxscaffold_3G00237450
rosa_rugosa	Rorug07G0205500 Rorug07G0205600
rosa_samantha	Rh7AG346600 Rh7AG346700 Rh7BG336500 Rh7BG336600 Rh7CG363900 Rh7CG364000 Rh7DG344400 Rh7DG344500
rosa_wichuraiana	Rw7G029360 Rw7G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	2 cut(s)	54, 246
AccII	CGCG	4 cut(s)	277, 279, 298, 599
AcoI	YGGCCR	2 cut(s)	15, 466
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	634
AcyI	GRCGYC	2 cut(s)	6, 144
AfiI	CCNNNNNNNGG	3 cut(s)	206, 335, 837
AhdI	GACNNNNNGTC	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	655, 745
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	77, 136, 805
AluI	AGCT	3 cut(s)	77, 136, 805
Alw26I	GTCTC	1 cut(s)	789
AoxI	GGCC	7 cut(s)	15, 267, 411, 452, 466, 594, 653
ApeKI	GCWGC	2 cut(s)	293, 752
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	5 cut(s)	8, 277, 279, 298, 328
AspS9I	GGNCC	4 cut(s)	268, 412, 452, 594
AsuHPI	GGTGA	8 cut(s)	40, 145, 232, 353, 398, 595, 622, 691
BalI	TGGCCA	2 cut(s)	17, 468
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	280, 739
BccI	CCATC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	657, 747
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	255, 354
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	5 cut(s)	9, 294, 566, 597, 753
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	5 cut(s)	10, 295, 567, 598, 754
Bme1390I	CCNGG	2 cut(s)	657, 747
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	4 cut(s)	268, 412, 452, 594
BmiI	GGNNCC	4 cut(s)	7, 414, 453, 595
BmrFI	CCNGG	2 cut(s)	657, 747
BmsI	GCATC	2 cut(s)	313, 379
BpiI	GAAGAC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	798
BsaHI	GRCGYC	2 cut(s)	6, 144
BsaJI	CCNNGG	4 cut(s)	12, 94, 156, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 335, 837
Bse118I	RCCGGY	4 cut(s)	35, 206, 328, 458
BseBI	CCWGG	2 cut(s)	657, 747
BseDI	CCNNGG	4 cut(s)	12, 94, 156, 597
BseGI	GGATG	5 cut(s)	262, 565, 639, 709, 730
BseLI	CCNNNNNNNGG	3 cut(s)	206, 335, 837
BseMII	CTCAG	3 cut(s)	146, 512, 660
BsePI	GCGCGC	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	2 cut(s)	280, 739
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	4 cut(s)	277, 279, 298, 599
BshFI	GGCC	7 cut(s)	17, 269, 413, 454, 468, 596, 655
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	7 cut(s)	36, 207, 219, 266, 329, 459, 777
BslFI	GGGAC	5 cut(s)	76, 177, 213, 531, 659
BslI	CCNNNNNNNGG	3 cut(s)	206, 335, 837
BsmAI	GTCTC	1 cut(s)	789
BsmBI	CGTCTC	1 cut(s)	789
BsmFI	GGGAC	5 cut(s)	76, 177, 213, 531, 659
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	7 cut(s)	17, 269, 413, 454, 468, 596, 655
Bsp143I	GATC	1 cut(s)	182
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	2 cut(s)	12, 156
BspANI	GGCC	7 cut(s)	17, 269, 413, 454, 468, 596, 655
BspCNI	CTCAG	3 cut(s)	145, 513, 661
BspFNI	CGCG	4 cut(s)	277, 279, 298, 599
BspLI	GGNNCC	4 cut(s)	7, 414, 453, 595
BspT107I	GGYRCC	1 cut(s)	5
BsrFI	RCCGGY	4 cut(s)	35, 206, 328, 458
BssAI	RCCGGY	4 cut(s)	35, 206, 328, 458
BssECI	CCNNGG	4 cut(s)	12, 94, 156, 597
BssHII	GCGCGC	1 cut(s)	275
BssMI	GATC	1 cut(s)	182
BssNI	GRCGYC	2 cut(s)	6, 144
BssT1I	CCWWGG	2 cut(s)	12, 156
Bst2UI	CCWGG	2 cut(s)	657, 747
Bst4CI	ACNGT	3 cut(s)	52, 90, 244
BstACI	GRCGYC	2 cut(s)	6, 144
BstC8I	GCNNGC	7 cut(s)	37, 61, 277, 300, 456, 549, 764
BstDEI	CTNAG	3 cut(s)	132, 521, 669
BstDSI	CCRYGG	3 cut(s)	12, 156, 597
BstF5I	GGATG	5 cut(s)	262, 565, 639, 709, 730
BstFNI	CGCG	4 cut(s)	277, 279, 298, 599
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	5 cut(s)	8, 277, 279, 298, 328
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 299, 377, 474, 548
BstNI	CCWGG	2 cut(s)	657, 747
BstSCI	CCNGG	2 cut(s)	655, 745
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	4 cut(s)	277, 279, 298, 599
BstV1I	GCAGC	2 cut(s)	280, 739
BstV2I	GAAGAC	1 cut(s)	142
BsuRI	GGCC	7 cut(s)	17, 269, 413, 454, 468, 596, 655
BtgI	CCRYGG	3 cut(s)	12, 156, 597
BtsCI	GGATG	5 cut(s)	262, 565, 639, 709, 730
BtsI	GCAGTG	2 cut(s)	288, 825
BtsIMutI	CAGTG	2 cut(s)	288, 825
Cac8I	GCNNGC	7 cut(s)	37, 61, 277, 300, 456, 549, 764
CfoI	GCGC	5 cut(s)	8, 277, 279, 298, 328
Cfr10I	RCCGGY	4 cut(s)	35, 206, 328, 458
Cfr13I	GGNCC	4 cut(s)	268, 412, 452, 594
Cfr42I	CCGCGG	1 cut(s)	600
CviAII	CATG	4 cut(s)	13, 157, 250, 781
DdeI	CTNAG	3 cut(s)	132, 521, 669
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	258
EaeI	YGGCCR	2 cut(s)	15, 466
Eam1105I	GACNNNNNGTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	12, 156
Eco147I	AGGCCT	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	655, 745
EcoT14I	CCWWGG	2 cut(s)	12, 156
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
ErhI	CCWWGG	2 cut(s)	12, 156
Esp3I	CGTCTC	1 cut(s)	789
FaeI	CATG	4 cut(s)	16, 160, 253, 784
FaqI	GGGAC	5 cut(s)	76, 177, 213, 531, 659
FatI	CATG	4 cut(s)	12, 156, 249, 780
FauI	CCCGC	5 cut(s)	29, 373, 544, 584, 592
FblI	GTMKAC	2 cut(s)	54, 246
Fnu4HI	GCNGC	5 cut(s)	9, 294, 566, 597, 753
FokI	GGATG	5 cut(s)	249, 572, 646, 716, 737
Fsp4HI	GCNGC	5 cut(s)	9, 294, 566, 597, 753
FspBI	CTAG	2 cut(s)	255, 354
GlaI	GCGC	5 cut(s)	7, 276, 278, 297, 327
GluI	GCNGC	5 cut(s)	9, 294, 566, 597, 753
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	7 cut(s)	17, 269, 413, 454, 468, 596, 655
HapII	CCGG	7 cut(s)	36, 207, 219, 266, 329, 459, 777
HhaI	GCGC	5 cut(s)	8, 277, 279, 298, 328
Hin1I	GRCGYC	2 cut(s)	6, 144
Hin1II	CATG	4 cut(s)	16, 160, 253, 784
Hin6I	GCGC	5 cut(s)	6, 275, 277, 296, 326
HinP1I	GCGC	5 cut(s)	6, 275, 277, 296, 326
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	803
HpaII	CCGG	7 cut(s)	36, 207, 219, 266, 329, 459, 777
HphI	GGTGA	8 cut(s)	40, 145, 232, 353, 398, 595, 622, 691
Hpy166II	GTNNAC	2 cut(s)	55, 247
Hpy8I	GTNNAC	2 cut(s)	55, 247
Hpy99I	CGWCG	3 cut(s)	146, 149, 248
HpyAV	CCTTC	6 cut(s)	35, 78, 353, 430, 521, 676
HpyCH4III	ACNGT	3 cut(s)	52, 90, 244
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	477, 542, 755, 762
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 299, 377, 474, 548
HpyF3I	CTNAG	3 cut(s)	132, 521, 669
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	6, 144
Hsp92II	CATG	4 cut(s)	16, 160, 253, 784
HspAI	GCGC	5 cut(s)	6, 275, 277, 296, 326
KasI	GGCGCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	600
Kzo9I	GATC	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	280, 739
LweI	GCATC	2 cut(s)	313, 379
MaeI	CTAG	2 cut(s)	255, 354
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	46, 238, 341
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	142
MlsI	TGGCCA	2 cut(s)	17, 468
MluCI	AATT	2 cut(s)	307, 508
MluNI	TGGCCA	2 cut(s)	17, 468
Mly113I	GGCGCC	1 cut(s)	6
MmeI	TCCRAC	2 cut(s)	127, 537
Mox20I	TGGCCA	2 cut(s)	17, 468
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	2 cut(s)	17, 468
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	2 cut(s)	17, 468
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	7 cut(s)	36, 207, 219, 266, 329, 459, 777
MspR9I	CCNGG	2 cut(s)	657, 747
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	657, 747
MvnI	CGCG	4 cut(s)	277, 279, 298, 599
MwoI	GCNNNNNNNGC	5 cut(s)	14, 299, 377, 474, 548
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	6
NcoI	CCATGG	2 cut(s)	12, 156
NdeII	GATC	1 cut(s)	182
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	4 cut(s)	16, 160, 253, 784
NlaIV	GGNNCC	4 cut(s)	7, 414, 453, 595
NmuCI	GTSAC	3 cut(s)	46, 238, 341
OliI	CACNNNNGTG	1 cut(s)	158
PauI	GCGCGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	10, 295, 567, 598, 754
PluTI	GGCGCC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	655, 745
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	655, 745
PspN4I	GGNNCC	4 cut(s)	7, 414, 453, 595
PspPI	GGNCC	4 cut(s)	268, 412, 452, 594
PsyI	GACNNNGTC	1 cut(s)	146
PteI	GCGCGC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	600
SalI	GTCGAC	1 cut(s)	245
SatI	GCNGC	5 cut(s)	9, 294, 566, 597, 753
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	4 cut(s)	268, 412, 452, 594
ScrFI	CCNGG	2 cut(s)	657, 747
SetI	ASST	6 cut(s)	79, 138, 147, 388, 807, 820
SfaNI	GCATC	2 cut(s)	313, 379
SfcI	CTRYAG	1 cut(s)	86
SfoI	GGCGCC	1 cut(s)	7
Sfr303I	CCGCGG	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
Sse9I	AATT	2 cut(s)	307, 508
SseBI	AGGCCT	1 cut(s)	655
SspDI	GGCGCC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	255, 354
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	2 cut(s)	655, 745
StyI	CCWWGG	2 cut(s)	12, 156
TaaI	ACNGT	3 cut(s)	52, 90, 244
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	246, 321, 402
TasI	AATT	2 cut(s)	307, 508
TauI	GCSGC	3 cut(s)	11, 568, 599
TscAI	CASTG	2 cut(s)	295, 832
TseFI	GTSAC	3 cut(s)	46, 238, 341
TseI	GCWGC	2 cut(s)	293, 752
Tsp45I	GTSAC	3 cut(s)	46, 238, 341
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	3 cut(s)	34, 226, 385
TspRI	CASTG	2 cut(s)	295, 832
Tth111I	GACNNNGTC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	54, 246
XspI	CTAG	2 cut(s)	255, 354
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.