Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

179905 .. 188083

Gene Structure 8179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4476 bp

ATGGCTCCGGGGCGTAGACGCGGAGCGAACAAGGCCAAGGATAAGAGCCAGTTGAGTCTCGGCGATCTTGTTCTTGCTAAGGTCAAGGGCTTCCCCTATTGGCCCGCCAAGATTAGCAGGCCTGAAGATTGGAAGAAGGTCCCTGATCGATCGAAATATTTTGTCCAATTTTTTGGAACGGAAGAGATAGCTTTTGTTGCCCCTGCAGATATTCAGGCATTCACTAGTGAGGCAAAAAGCAAATTATTAGGTCGTTGTCATGCTAAAACTAAGAATTTTTCCCAAGCTGTGAAGGACATATGTCAGGCATTTGATGAGTTACAAAAAAAGAAATCAAATGATTTGAGAGTTGATACTGATAGATCAGACCCCGGATGTGATGCTCCGTCTGGTGATGGCGTAGAAGATAATGGGATTGATGTTGACTTAAGGGATGGGGAGGGTGTACGGGATTCCAATGGACAAACAGATAAAGAAGAAGCCTTGGGTGATATTTTCCCTAAGCTGGAACGTTGTTCACAGTTACAAGGTGAAAATGACAATGATGTTGTAAATCCATCTACCTTGTGTGGAGCAGAAGAGAGTTCTCCAGTTTTTTCTCCTGAGAGAAAAAATAAAATGGTGGCAGTTCCACCGCCTAAAAAAGAGGTATTAAAGAAATCCAAGCCTGAGAAGGAAGAAGTTTCTGGTAGTAAGCGTGAAGAAGATGATCGCACTAAGAAACACAGTGATGGACAGAGGTCTGTAGCAAATGGCCACAAGTTGTCAAAGATGGTTACTGGATCAAAGAGGAAACATGATGGCACAATTGAGGAACAAAAAAATCGTTCTGCTGTAACATCATCGAAGGATGATAGCTCTGTTGGTCCTGTTGATCAGCCACAATCTGGTGAGCGATTGAAAGATGGAACAAAAGGCAAACTTGGCTCTGGTGGCAGGAAGAGGGAGTTCTCCCCAGATGCTCAAAAATCAGATACTGGTAGTAAGGTTGGGAAAAAGACAAAAGACCTGGTTAAAGCCAATAAGCAAGTCAAGGTGCCAGATGATGTGATGGATGATCCTGAGGAACAGGCCAGAGACAAACATTCGGGAAGGACAAAGGGGTCTCAACCAGGGCTTGGAAAGCCTAATTTGGTAACAAATGGTCCTTCACTTCCTACCAAAAAGTCAAAACATGTAGATGCAGGGGATAGTGGCCCAAAGGGTTCAGTATCTAAAATTGTGAAGAGTCTATCTCCTAGTTCTGATGTTGATGACAAGACATTAAAAAAATTGGATTCAAATTTGTCAAATTCACGTGTGAAAAGAGAGAACCATCTAGTTTCCAGGTCCAAAATTGTTGTTGGACCCAGTGGTCCTGGTGATGAAGCTGTGCTACCCCTTACAAAGAGGCGCTGTCGAGCATTGGAGGCTATGTCTGATTCTGATGGTTTGGTCTCTGACGATAAGAAGAATGATATGTCATGCTCAACTGATGTCAGAGTTCCTACGCAGAGAAAACGGAGAGCTGTGTGCCTCTATGATGATGAGGAGGAGGAGGAAAAACCCAAAACACCAGTTCATGGAGGATCTTCCCGAAATACTAAAGCGCCTTCATACTCTTCAGACGCTGTAAAGAGCACGAATGAATATCATGAGAGGTCAGATACTGCTCAACAGAGTACCAAATGTCCTACTGAATTTCAAATGGGCCGCACAAAGGAATCATCTTCCCAGTTAAATGATGGTTTTATGTCACCTAGAAAACCTCACGTGGATGAGGTGAGGCCGGAAAGGAAACCTCAAATTGACAAAAAGAGTCTTGAAAAGGCAGTGCATGTGTATCACAGTCCAAAAAAATCAGAACTTGGGCAGTTGTTGAAGGAGGAGAAACCAACTGTGATTTCTCCTAAGAAGTCTCCCCAGTTAATTTCTACCACTAAATCAGTTGTGGAACAGCAGAAACCCACAAAATCTATTGTTAAAGTCTCTAGTACCGGTACTCAAAAGAAGGCTCAGGCTTTGTGTAGCAAGGGTTCAGGTTTAGTGTCTAACAGTTCGGTTTCTTCTCATAATCAGGCAAGAAACAAGCCTGCATCTTCTGGAGAAAAGTCTAAACCTACTCCACGATCAATCTCTCAGATCAACGACCCCGCTATCTTAACAGAAAATGCAACCGAGTACATTTTATTTTCTGGTGAAAGAATGGAAGTTGGCAGAGAAGATAAAATTGGCTTATCCATGGATTCTAGAACTCCGGAATCATCTCAGTCTATGAGGCATCTTATTGCAGTCGCACAAGCAAAAAGGAAACAAGCTCAGTCGCAAAATTTCTTTCTTGGATTTTCCAATCCAACTCTTGTATCTAACTCAGATATGCAAGGGAGGAGCCCCAGTCCTTCTGCAGTTCAGGGGTTTTTTTCCATTACCAACAGTGCGTTGCAGGCAGATATCCCAGGATCCAATCAACTCACAAATGTAGTTTCCCCGGCTGCTCATGGTCGACAGTATGTATCACAAGTTCAACTTGATTTAGAGGAAATTTCAGAGAGAAGAGTTAGTTCTGGGCATCGAACTGCTGGAGGATCGCTTAGTGGTGGTACCGAGGCAGCTGTTGCTCGTGATTCTTTTGAGGGAATGATAGAAACTTTGTCTAGGACTAAAGAAAGTATTAGTCGTGCAACTCGTCTTGCCATTGATTGTGCCAAGTATGGTATTGCCAATGAGGTTGTGGAACTACTAATCCGGAAGTTGGAAAGCGAGCCTAGTGTCCATCGTAAAGTTGATCTTTTCTTTCTTGTGGATTCCATCACACAAATCTCTCATAATCAAAAAGGCATTGCGGGAGCTTCATATGTTCCGATGGTTCAAGCAGCATTGCCACGTCTTCTAGGTGCTGCCGCTCCACCTGGTTCTGGTGCTCGTGATAATCGTCGTCAATGTCTTAAGGTTTTACGGCTGTGGATAGAGAGAAAAATCTTTCCTGAATCTGTTCTTCGTCCTTACATGGATGACATTGGAGTTTCAAATGATGATTCAACTGCTGGTTACTCCTTTAGACGTCCATCTCGAGCTGAGCGTGCGATAGATGATCCAATCAGAGAAATGGAAGGAATGTTTGTGGATGAGTATGGAAGTAATGCTACATTTCAGCTGCCTGGACTTCTGTCTTCTCATGCGTTTGAAGATGACGATGAAGAAGAAGAAGAAGAAGAACTTCCTAGCTGTTCATATAAGGAGACTAGCCATCCCTCACCAATGGAAACTACCCATGCTTCTGGGGAGTCAGAATCATGTGTGGTGACTCCTAATGATAGGCGACATTGCATCTTGGAGGATGTAGATGGTGAACTTGAAATGGAGGATGTTTCTGGACACCCAAAGGAAGAAAGACCCTTGTTTATTAATGGTTCTTTTGAAATGGATCCACAACAGCAGGGATCAGATAGGGTCATGGAGCCAGCTTCAATTGCTTGCACTGATTTGCCCCCTCTTCCAGAGGGTTCTCCACCATTGCCTCTTGATTCTCCTCCTGCACCCCCACCTTTGCCTCCCTCACCTCCACCACCCCCACCACCACCTCCGTTATCTCCATCACCACCACCACCCCCACCTCCCCCATCACAGCCACCTCCTCCCCTACCATCTTCTGGTCATCAACCGTTGTTGATTCCCCAGTCATCTATACCAACACAGGCTTCATTACTACCGCAACAGATGCTGCCTCTGCAATCATCAATGCATCCTTCACCGCAGGTGGCATATCAACCTCCTATACCTCATGAATACTGCAGCACAAGTGGTAACCAGCATGTTCAAGTTTCTGGAAATGCTCCTCATGTTGGCCCTATTGATGCGACTGCCAAGAAGGAGATGTTTCCGCAGCAGCAAGCTTGCTTTGTTCCTGCTGGAGTATGTGGTCCTCGAGAACCTTCTGGATTTAATTCGACAAGGCCGCTAGAACATGGACATAATGACCTGTTTCTAAGTGCACAAATCTCTCAACCAAGCCAACCATTTCAACAAGTTAATACACCTTTCCCTCAAAGGCCTTTACCTCCTGCCCCACCACAAAATCCGTCGAGTCATTTCTCCTATACTAAGCAACATCCACAGCAGCATCCTCAACAACATCCTCAACAGCATCCTCAACAACATCCTCAGCAGCATCCTCAGCATCCTCAGCAGCATCCTCAGCAACCATACCACGGTTCATACTCTTTGCCTCCCCCACCTGATAGTCAAAGAAGATTTGTTGCCGATGAACAACGTGGTGTTTGGATGAATGGAGGAAGACCCCCACATCCGGGACCACCATTTGTCCACGAAGGTTATTTTCGCCCACCGCCTGATAGGCCACAACCTAATAATATTGCTTTTCAGCGTCCTGCCCCTAATAATGTTCCAACTGGAGCTCCAATATCAGGTCACAGTGCTTCCCAGATCTTGCCATGTAGACCAGACATATCTGCTGTTAATTGTTGGAGACCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1492

Amino Acids

162.79

Weight (kDa)

7.92

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	21 - 104	1.5e-18	PWWP domain
CTK3	PF12243	867 - 986	3.5e-07	CTD kinase subunit gamma CTK3
CID	PF04818	869 - 993	1.7e-15	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3724
AasI	GACNNNNNNGTC	2 cut(s)	1102, 1353
AatII	GACGTC	1 cut(s)	3043
Acc36I	ACCTGC	1 cut(s)	3724
Acc65I	GGTACC	1 cut(s)	2579
AccB1I	GGYRCC	2 cut(s)	1036, 2579
AccB7I	CCANNNNNTGG	4 cut(s)	887, 1118, 1562, 3629
AccBSI	CCGCTC	1 cut(s)	2882
AccI	GTMKAC	3 cut(s)	16, 2482, 4435
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	2 cut(s)	2236, 2724
AclI	AACGTT	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	6 cut(s)	274, 1282, 1291, 1679, 2308, 2520
AcuI	CTGAAG	2 cut(s)	144, 1587
AcvI	CACGTG	2 cut(s)	1298, 1753
AcyI	GRCGYC	1 cut(s)	3040
AfaI	GTAC	6 cut(s)	447, 1663, 1975, 1981, 2162, 2581
AflII	CTTAAG	2 cut(s)	427, 2924
AflIII	ACRYGT	2 cut(s)	1174, 1297
AgeI	ACCGGT	1 cut(s)	1976
AhlI	ACTAGT	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	2864
AjnI	CCWGG	7 cut(s)	1008, 1111, 1325, 1357, 2434, 2887, 3136
AjuI	GAANNNNNNNTTGG	6 cut(s)	1867, 1899, 2193, 2225, 3661, 3693
AloI	GAACNNNNNNTCC	2 cut(s)	2706, 2738
Alw21I	GWGCWC	4 cut(s)	1622, 2902, 3973, 4396
Alw26I	GTCTC	8 cut(s)	62, 1071, 1110, 1441, 1902, 1972, 3212, 4459
Alw44I	GTGCAC	1 cut(s)	3969
AlwNI	CAGNNNCTG	4 cut(s)	977, 1610, 1649, 3700
Ama87I	CYCGRG	2 cut(s)	3048, 3903
Aor13HI	TCCGGA	2 cut(s)	2236, 2724
ApaLI	GTGCAC	1 cut(s)	3969
ApoI	RAATTY	6 cut(s)	274, 1282, 1291, 1679, 2308, 2520
AseI	ATTAAT	1 cut(s)	3384
AsiGI	ACCGGT	1 cut(s)	1976
Asp700I	GAANNNNTTC	2 cut(s)	2970, 3195
Asp718I	GGTACC	1 cut(s)	2579
AspLEI	GCGC	2 cut(s)	1395, 1591
AsuC2I	CCSGG	4 cut(s)	9, 372, 2468, 4287
AvaI	CYCGRG	2 cut(s)	3048, 3903
AvaII	GGWCC	8 cut(s)	139, 866, 1145, 1329, 1346, 1355, 3899, 4289
AxyI	CCTNAGG	1 cut(s)	1062
BaeGI	GKGCMC	1 cut(s)	3973
BaeI	ACNNNNGTAYC	2 cut(s)	2325, 2358
BalI	TGGCCA	1 cut(s)	756
BamHI	GGATCC	2 cut(s)	2438, 3403
BanI	GGYRCC	2 cut(s)	1036, 2579
BanII	GRGCYC	2 cut(s)	2372, 4396
BarI	GAAGNNNNNNTAC	4 cut(s)	1359, 1391, 3106, 3138
BauI	CACGAG	2 cut(s)	2598, 2901
BbrPI	CACGTG	2 cut(s)	1298, 1753
BbsI	GAAGAC	3 cut(s)	2858, 3141, 4279
Bbv12I	GWGCWC	4 cut(s)	1622, 2902, 3973, 4396
BbvCI	CCTCAGC	4 cut(s)	4140, 4152, 4161, 4173
BceAI	ACGGC	1 cut(s)	2951
BciT130I	CCWGG	7 cut(s)	1010, 1113, 1327, 1359, 2436, 2889, 3138
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	4 cut(s)	9, 372, 2468, 4287
BcoDI	GTCTC	8 cut(s)	62, 1071, 1110, 1441, 1902, 1972, 3212, 4459
BcuI	ACTAGT	1 cut(s)	224
BfmI	CTRYAG	4 cut(s)	204, 744, 2382, 3769
BfoI	RGCGCY	2 cut(s)	1396, 1592
BfrI	CTTAAG	2 cut(s)	427, 2924
BfuAI	ACCTGC	1 cut(s)	3724
BglI	GCCNNNNNGGC	1 cut(s)	4333
BglII	AGATCT	1 cut(s)	4422
BlpI	GCTNAGC	1 cut(s)	3054
Bme18I	GGWCC	8 cut(s)	139, 866, 1145, 1329, 1346, 1355, 3899, 4289
BmeT110I	CYCGRG	2 cut(s)	3048, 3903
BmgBI	CACGTC	1 cut(s)	2864
BmrI	ACTGGG	5 cut(s)	1344, 1708, 1897, 2367, 3649
BmuI	ACTGGG	5 cut(s)	1344, 1708, 1897, 2367, 3649
BoxI	GACNNNNGTC	3 cut(s)	300, 739, 3145
BpiI	GAAGAC	3 cut(s)	2858, 3141, 4279
BplI	GAGNNNNNCTC	2 cut(s)	1219, 1251
BpmI	CTGGAG	5 cut(s)	573, 2103, 2580, 3909, 4410
Bpu10I	CCTNAGC	7 cut(s)	78, 501, 1995, 4140, 4152, 4161, 4173
Bpu1102I	GCTNAGC	1 cut(s)	3054
BpuMI	CCSGG	4 cut(s)	9, 372, 2468, 4287
Bsa29I	ATCGAT	1 cut(s)	148
BsaAI	YACGTR	2 cut(s)	1298, 1753
BsaHI	GRCGYC	1 cut(s)	3040
BsaI	GGTCTC	3 cut(s)	1110, 1441, 4459
BsaWI	WCCGGW	3 cut(s)	1976, 2236, 2724
BsaXI	ACNNNNNCTCC	6 cut(s)	1400, 1430, 2359, 2389, 4378, 4408
Bse118I	RCCGGY	1 cut(s)	1976
Bse21I	CCTNAGG	1 cut(s)	1062
Bse3DI	GCAATG	4 cut(s)	2817, 2855, 3301, 3491
BseAI	TCCGGA	2 cut(s)	2236, 2724
BseBI	CCWGG	7 cut(s)	1010, 1113, 1327, 1359, 2436, 2889, 3138
BseCI	ATCGAT	1 cut(s)	148
BseMI	GCAATG	4 cut(s)	2817, 2855, 3301, 3491
BseRI	GAGGAG	8 cut(s)	1544, 1547, 1550, 1880, 2380, 3498, 3603, 3804
BseSI	GKGCMC	1 cut(s)	3973
BsgI	GTGCAG	1 cut(s)	3498
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	152
BshNI	GGYRCC	2 cut(s)	1036, 2579
BshTI	ACCGGT	1 cut(s)	1976
BshVI	ATCGAT	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	4 cut(s)	1622, 2902, 3973, 4396
BsiHKCI	CYCGRG	2 cut(s)	3048, 3903
BsiSI	CCGG	8 cut(s)	8, 372, 1769, 1977, 2237, 2468, 2725, 4286
BslFI	GGGAC	2 cut(s)	125, 4302
BsmAI	GTCTC	8 cut(s)	62, 1071, 1110, 1441, 1902, 1972, 3212, 4459
BsmFI	GGGAC	2 cut(s)	125, 4302
BsmI	GAATGC	1 cut(s)	218
Bso31I	GGTCTC	3 cut(s)	1110, 1441, 4459
BsoBI	CYCGRG	2 cut(s)	3048, 3903
Bsp1286I	GDGCHC	5 cut(s)	1622, 2372, 2902, 3973, 4396
Bsp13I	TCCGGA	2 cut(s)	2236, 2724
Bsp1720I	GCTNAGC	1 cut(s)	3054
Bsp19I	CCATGG	1 cut(s)	2220
BspDI	ATCGAT	1 cut(s)	148
BspEI	TCCGGA	2 cut(s)	2236, 2724
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	1633, 3760
BspMAI	CTGCAG	3 cut(s)	208, 2386, 3773
BspMI	ACCTGC	1 cut(s)	3724
BspT107I	GGYRCC	2 cut(s)	1036, 2579
BspTI	CTTAAG	2 cut(s)	427, 2924
BspTNI	GGTCTC	3 cut(s)	1110, 1441, 4459
BsrBI	CCGCTC	1 cut(s)	2882
BsrDI	GCAATG	4 cut(s)	2817, 2855, 3301, 3491
BsrFI	RCCGGY	1 cut(s)	1976
BssAI	RCCGGY	1 cut(s)	1976
BssNI	GRCGYC	1 cut(s)	3040
BssSI	CACGAG	2 cut(s)	2598, 2901
BssT1I	CCWWGG	3 cut(s)	36, 483, 2220
Bst2BI	CACGAG	2 cut(s)	2598, 2901
Bst2UI	CCWGG	7 cut(s)	1010, 1113, 1327, 1359, 2436, 2889, 3138
Bst6I	CTCTTC	7 cut(s)	177, 573, 935, 1220, 1606, 2527, 3477
BstACI	GRCGYC	1 cut(s)	3040
BstAFI	CTTAAG	2 cut(s)	427, 2924
BstAPI	GCANNNNNTGC	2 cut(s)	2594, 3697
BstBAI	YACGTR	2 cut(s)	1298, 1753
BstDSI	CCRYGG	2 cut(s)	2220, 4186
BstEII	GGTNACC	1 cut(s)	3782
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	2 cut(s)	1396, 1592
BstHHI	GCGC	2 cut(s)	1395, 1591
BstMAI	GTCTC	8 cut(s)	62, 1071, 1110, 1441, 1902, 1972, 3212, 4459
BstMCI	CGRYCG	1 cut(s)	152
BstNI	CCWGG	7 cut(s)	1010, 1113, 1327, 1359, 2436, 2889, 3138
BstNSI	RCATGY	3 cut(s)	1178, 1820, 3794
BstPAI	GACNNNNGTC	3 cut(s)	300, 739, 3145
BstPI	GGTNACC	1 cut(s)	3782
BstSFI	CTRYAG	4 cut(s)	204, 744, 2382, 3769
BstSLI	GKGCMC	1 cut(s)	3973
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	3 cut(s)	2858, 3141, 4279
BstX2I	RGATCY	4 cut(s)	1568, 2438, 3403, 4422
BstXI	CCANNNNNNTGG	2 cut(s)	173, 3257
BstYI	RGATCY	4 cut(s)	1568, 2438, 3403, 4422
Bsu15I	ATCGAT	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuTUI	ATCGAT	1 cut(s)	148
BtgI	CCRYGG	2 cut(s)	2220, 4186
BtrI	CACGTC	1 cut(s)	2864
BtsI	GCAGTG	1 cut(s)	1818
BtsIMutI	CAGTG	6 cut(s)	733, 1357, 1818, 2419, 3456, 4417
BveI	ACCTGC	1 cut(s)	3724
CaiI	CAGNNNCTG	4 cut(s)	977, 1610, 1649, 3700
CciI	TCATGA	2 cut(s)	1633, 3760
CfoI	GCGC	2 cut(s)	1395, 1591
Cfr10I	RCCGGY	1 cut(s)	1976
ClaI	ATCGAT	1 cut(s)	148
CseI	GACGC	3 cut(s)	27, 1616, 4352
CsiI	ACCWGGT	2 cut(s)	1008, 2887
Csp6I	GTAC	6 cut(s)	446, 1662, 1974, 1980, 2161, 2580
CspAI	ACCGGT	1 cut(s)	1976
CviQI	GTAC	6 cut(s)	446, 1662, 1974, 1980, 2161, 2580
DrdI	GACNNNNNNGTC	2 cut(s)	1102, 1353
DseDI	GACNNNNNNGTC	2 cut(s)	1102, 1353
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	7 cut(s)	177, 573, 935, 1220, 1606, 2527, 3477
EarI	CTCTTC	7 cut(s)	177, 573, 935, 1220, 1606, 2527, 3477
Ecl136II	GAGCTC	1 cut(s)	4394
Eco130I	CCWWGG	3 cut(s)	36, 483, 2220
Eco147I	AGGCCT	2 cut(s)	121, 4030
Eco24I	GRGCYC	2 cut(s)	2372, 4396
Eco31I	GGTCTC	3 cut(s)	1110, 1441, 4459
Eco32I	GATATC	1 cut(s)	2431
Eco47I	GGWCC	8 cut(s)	139, 866, 1145, 1329, 1346, 1355, 3899, 4289
Eco53kI	GAGCTC	1 cut(s)	4394
Eco57I	CTGAAG	2 cut(s)	144, 1587
Eco72I	CACGTG	2 cut(s)	1298, 1753
Eco81I	CCTNAGG	1 cut(s)	1062
Eco88I	CYCGRG	2 cut(s)	3048, 3903
Eco91I	GGTNACC	1 cut(s)	3782
EcoICRI	GAGCTC	1 cut(s)	4394
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	3782
EcoRII	CCWGG	7 cut(s)	1008, 1111, 1325, 1357, 2434, 2887, 3136
EcoRV	GATATC	1 cut(s)	2431
EcoT14I	CCWWGG	3 cut(s)	36, 483, 2220
EcoT22I	ATGCAT	1 cut(s)	3723
EcoT38I	GRGCYC	2 cut(s)	2372, 4396
ErhI	CCWWGG	3 cut(s)	36, 483, 2220
FalI	AAGNNNNNCTT	8 cut(s)	906, 938, 2490, 2522, 2751, 2783, 3180, 3212
FaqI	GGGAC	2 cut(s)	125, 4302
FauI	CCCGC	3 cut(s)	112, 2140, 2815
FauNDI	CATATG	2 cut(s)	299, 2833
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	3 cut(s)	16, 2482, 4435
FriOI	GRGCYC	2 cut(s)	2372, 4396
GlaI	GCGC	2 cut(s)	1394, 1590
GsuI	CTGGAG	5 cut(s)	573, 2103, 2580, 3909, 4410
HaeII	RGCGCY	2 cut(s)	1396, 1592
HapII	CCGG	8 cut(s)	8, 372, 1769, 1977, 2237, 2468, 2725, 4286
HgaI	GACGC	3 cut(s)	27, 1616, 4352
HhaI	GCGC	2 cut(s)	1395, 1591
Hin1I	GRCGYC	1 cut(s)	3040
Hin6I	GCGC	2 cut(s)	1393, 1589
HinP1I	GCGC	2 cut(s)	1393, 1589
HincII	GTYRAC	2 cut(s)	424, 2483
HindII	GTYRAC	2 cut(s)	424, 2483
HindIII	AAGCTT	1 cut(s)	3870
HpaII	CCGG	8 cut(s)	8, 372, 1769, 1977, 2237, 2468, 2725, 4286
Hpy166II	GTNNAC	9 cut(s)	17, 424, 446, 518, 2483, 3329, 3971, 4303, 4436
Hpy8I	GTNNAC	9 cut(s)	17, 424, 446, 518, 2483, 3329, 3971, 4303, 4436
Hpy99I	CGWCG	2 cut(s)	2916, 4063
HpyCH4IV	ACGT	6 cut(s)	511, 1297, 1752, 2863, 3040, 4249
HpySE526I	ACGT	6 cut(s)	511, 1297, 1752, 2863, 3040, 4249
Hsp92I	GRCGYC	1 cut(s)	3040
HspAI	GCGC	2 cut(s)	1393, 1589
Kpn2I	TCCGGA	2 cut(s)	2236, 2724
KpnI	GGTACC	1 cut(s)	2583
Ksp22I	TGATCA	1 cut(s)	874
MabI	ACCWGGT	2 cut(s)	1008, 2887
MaeII	ACGT	6 cut(s)	511, 1297, 1752, 2863, 3040, 4249
MbiI	CCGCTC	1 cut(s)	2882
MfeI	CAATTG	2 cut(s)	807, 3447
MflI	RGATCY	4 cut(s)	1568, 2438, 3403, 4422
MhlI	GDGCHC	5 cut(s)	1622, 2372, 2902, 3973, 4396
MlsI	TGGCCA	1 cut(s)	756
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	6 cut(s)	64, 1237, 1807, 3272, 3277, 4072
MmeI	TCCRAC	5 cut(s)	1324, 2357, 2712, 4409, 4442
Mox20I	TGGCCA	1 cut(s)	756
Mph1103I	ATGCAT	1 cut(s)	3723
MroI	TCCGGA	2 cut(s)	2236, 2724
MroXI	GAANNNNTTC	2 cut(s)	2970, 3195
MscI	TGGCCA	1 cut(s)	756
MslI	CAYNNNNRTG	3 cut(s)	729, 1179, 1755
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	2 cut(s)	2591, 3133
MspCI	CTTAAG	2 cut(s)	427, 2924
MspI	CCGG	8 cut(s)	8, 372, 1769, 1977, 2237, 2468, 2725, 4286
MunI	CAATTG	2 cut(s)	807, 3447
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	7 cut(s)	1010, 1113, 1327, 1359, 2436, 2889, 3138
MvnI	CGCG	1 cut(s)	21
NciI	CCSGG	4 cut(s)	9, 372, 2468, 4287
NcoI	CCATGG	1 cut(s)	2220
NdeI	CATATG	2 cut(s)	299, 2833
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	1734, 3280, 4406
NsiI	ATGCAT	1 cut(s)	3723
NspI	RCATGY	3 cut(s)	1178, 1820, 3794
PaeR7I	CTCGAG	2 cut(s)	3048, 3903
PagI	TCATGA	2 cut(s)	1633, 3760
PaqCI	CACCTGC	1 cut(s)	3724
PceI	AGGCCT	2 cut(s)	121, 4030
PciI	ACATGT	1 cut(s)	1174
PcsI	WCGNNNNNNNCGW	4 cut(s)	2662, 2908, 3046, 3055
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	2 cut(s)	2970, 3195
PflMI	CCANNNNNTGG	4 cut(s)	887, 1118, 1562, 3629
PfoI	TCCNGGA	1 cut(s)	4285
PinAI	ACCGGT	1 cut(s)	1976
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	6 cut(s)	63, 1236, 1806, 3271, 3277, 4071
PmaCI	CACGTG	2 cut(s)	1298, 1753
PmlI	CACGTG	2 cut(s)	1298, 1753
PpsI	GAGTC	6 cut(s)	63, 1236, 1806, 3271, 3277, 4071
Ppu21I	YACGTR	2 cut(s)	1298, 1753
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	1174
PshAI	GACNNNNGTC	3 cut(s)	300, 739, 3145
PshBI	ATTAAT	1 cut(s)	3384
Psp124BI	GAGCTC	1 cut(s)	4396
Psp1406I	AACGTT	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	7 cut(s)	1008, 1111, 1325, 1357, 2434, 2887, 3136
PspCI	CACGTG	2 cut(s)	1298, 1753
PspEI	GGTNACC	1 cut(s)	3782
PspGI	CCWGG	7 cut(s)	1008, 1111, 1325, 1357, 2434, 2887, 3136
PspPPI	RGGWCCY	1 cut(s)	139
PsrI	GAACNNNNNNTAC	4 cut(s)	1999, 2031, 2484, 2516
PstI	CTGCAG	3 cut(s)	208, 2386, 3773
PstNI	CAGNNNCTG	4 cut(s)	977, 1610, 1649, 3700
PsuI	RGATCY	4 cut(s)	1568, 2438, 3403, 4422
PvuI	CGATCG	1 cut(s)	152
PvuII	CAGCTG	2 cut(s)	2591, 3133
RsaI	GTAC	6 cut(s)	447, 1663, 1975, 1981, 2162, 2581
RsaNI	GTAC	6 cut(s)	446, 1662, 1974, 1980, 2161, 2580
RseI	CAYNNNNRTG	3 cut(s)	729, 1179, 1755
SacI	GAGCTC	1 cut(s)	4396
SalI	GTCGAC	1 cut(s)	2481
SchI	GAGTC	6 cut(s)	64, 1237, 1807, 3272, 3277, 4072
SduI	GDGCHC	5 cut(s)	1622, 2372, 2902, 3973, 4396
SexAI	ACCWGGT	2 cut(s)	1008, 2887
SfcI	CTRYAG	4 cut(s)	204, 744, 2382, 3769
Sfr274I	CTCGAG	2 cut(s)	3048, 3903
SinI	GGWCC	8 cut(s)	139, 866, 1145, 1329, 1346, 1355, 3899, 4289
SlaI	CTCGAG	2 cut(s)	3048, 3903
SmiMI	CAYNNNNRTG	3 cut(s)	729, 1179, 1755
SmlI	CTYRAG	4 cut(s)	427, 2924, 3048, 3903
SmoI	CTYRAG	4 cut(s)	427, 2924, 3048, 3903
SpeI	ACTAGT	1 cut(s)	224
SseBI	AGGCCT	2 cut(s)	121, 4030
SspI	AATATT	2 cut(s)	158, 4351
SstI	GAGCTC	1 cut(s)	4396
StuI	AGGCCT	2 cut(s)	121, 4030
StyI	CCWWGG	3 cut(s)	36, 483, 2220
TaiI	ACGT	6 cut(s)	514, 1300, 1755, 2866, 3043, 4252
TatI	WGTACW	1 cut(s)	2160
TauI	GCSGC	3 cut(s)	1695, 2882, 3937
TscAI	CASTG	6 cut(s)	733, 1357, 1818, 2419, 3463, 4417
TseFI	GTSAC	3 cut(s)	1734, 3280, 4406
Tsp45I	GTSAC	3 cut(s)	1734, 3280, 4406
TspGWI	ACGGA	5 cut(s)	194, 375, 1516, 3552, 4047
TspRI	CASTG	6 cut(s)	733, 1357, 1818, 2419, 3463, 4417
Van91I	CCANNNNNTGG	4 cut(s)	887, 1118, 1562, 3629
Vha464I	CTTAAG	2 cut(s)	427, 2924
VneI	GTGCAC	1 cut(s)	3969
VpaK11BI	GGWCC	8 cut(s)	139, 866, 1145, 1329, 1346, 1355, 3899, 4289
VspI	ATTAAT	1 cut(s)	3384
XapI	RAATTY	6 cut(s)	274, 1282, 1291, 1679, 2308, 2520
XbaI	TCTAGA	1 cut(s)	2228
XceI	RCATGY	3 cut(s)	1178, 1820, 3794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1721, 2707
XhoI	CTCGAG	2 cut(s)	3048, 3903
XmiI	GTMKAC	3 cut(s)	16, 2482, 4435
XmnI	GAANNNNTTC	2 cut(s)	2970, 3195
ZraI	GACGTC	1 cut(s)	3041
Zsp2I	ATGCAT	1 cut(s)	3723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.