pycom16g03160

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004265
Physical Location & Seq
Reverse (-)
1980896 .. 1983839
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1494 bp
ATGGACCAAAAGCCCCGCCAACCGAAGGTAACCGTCGGTACCAATCACCCACTCCGGCATTTATCCATCCTTCAAAGCCCCATGTTACAAGCAGAGCTGTCATCCGCGATAAAACGACGCCGTAGGCTCGTAGCATTCAAAACAATAATGCTCCAACGTGCCGGTCAACACATCGGACGGCTTCTGCGAGATCGTTTCAAAGTCTTGACCCCTCCAAACAGAAAACTGCCAAAAAATTTAAAACGGTCGTTATCTCATCCTCCAGCCTCGTTAATATTCACACAACTTTCTTTTTCCAGAGTTCACAGCAACCCTTCTTCTACTATATCCTACATTGTTGTTAACGTTGATGTTCCGAGAAATCTTAACCGTCCGCAGCCAGAAGAAGAAATTTTCCGCCCTCAAATTTTCATGGAAAGTGCTCGCGTTTTTCTGGAAAAATATTTGAAGTCTTCTTTTATTAAGGTTATGGCGTGGAGGAATCTGGGATCGCTTTTTAATTTCCGGGGTATCTTTCAGGGAAGAACTTCGGAAGTCGAACTGGGAAGGTACACGATTAAATCCCATGGAGCTGCACTTGCAAAGAAGCACATGCACGATTGGCTTATACTGGTGCTCCTTGGAGTGATAGATCTCATTTTGTTCATCATTCATCCGTTCTACCGTTTCGTGGGGAAGGATATGATGGAAGACCTTAGATATCCCATGAAAGAGAACACGGTGCCTCTGTGGGCTGTCCCTATGTACTCGGTTTTGTTGCCTATTGCGATTTTCCTCTTTTTCTATATGCGTCGGAAAGATGTCTATGATCTGCACCATAGCATTCTAGGCCTCTTGTTCGCGGTGCTGATTACTGGTGTTATCACGGATGCGATTAAAAATGCGGTTGGCCGGCCTCGACCAGACTTCTTTTGGCGTTGCTTTCCTGATGGAAAAGATGTCTATGATCGGTTTGGGGGTGTAATGTGCCATGGTAAGGGCAGTGACCTAAAGGAAGGACATAAGAGTTTTCCAAGTGGTCACGCTTCATGGTCCTTTGCAGGTTTAGGATTTCTCTCGTTGTACTTGTGCGGGAAGATTAAAGCATTTGATCGCAAAGGGCACGTGGCAAAACTATGTATTGTCTTGCTTCCTCTACTTGCTGCATCTCTCGTTGGCATTTCAAGAGTAGATGACTACTGGCACCATTGGCAAGATGTGTTTGCTGGAGGCCTCTTAGGACTTGTTGTGGCTTCGTTTTGTTACCGGCAATTCTTCCCTTCCCCTTATCACGATCAAGGGTGGGGTCCTTATGCGTATTTCTCTGCATTGGAGGAAACACGTAGCCATTCAAATCCGGGTGTCAATCCTATGAACAATGCACTGAGTGTGCAGGTGATCGGGGCTCAGAATGTGAACGAACAACACATACAAATTGGCGATGCACTTGCAGCATTCTCTCACAACCGATACACAAGCATTAGTGCGCATGAAATGGAATCGGGCGAAAAGTAG

Protein Analysis

498

Amino Acids

56.57

Weight (kDa)

9.83

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 276 - 419 1.1e-31 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1363
Acc16I TGCGCA 1 cut(s) 1467
Acc36I ACCTGC 2 cut(s) 1031, 1363
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 3 cut(s) 38, 721, 1182
AccII CGCG 3 cut(s) 107, 426, 842
AciI CCGC 7 cut(s) 16, 105, 374, 397, 842, 884, 1071
AclI AACGTT 1 cut(s) 345
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 3 cut(s) 235, 390, 405
AcvI CACGTG 1 cut(s) 1105
AcyI GRCGYC 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 1367
AfaI GTAC 4 cut(s) 40, 551, 746, 1064
AfiI CCNNNNNNNGG 3 cut(s) 25, 670, 976
AflIII ACRYGT 1 cut(s) 1319
AgsI TTSAA 6 cut(s) 74, 139, 199, 448, 1164, 1332
AluBI AGCT 2 cut(s) 97, 572
AluI AGCT 2 cut(s) 97, 572
Alw21I GWGCWC 2 cut(s) 424, 618
AlwI GGATC 1 cut(s) 496
AoxI GGCC 4 cut(s) 829, 889, 893, 1210
ApeKI GCWGC 4 cut(s) 376, 572, 1142, 1430
ApoI RAATTY 3 cut(s) 235, 390, 405
Asp700I GAANNNNTTC 1 cut(s) 526
Asp718I GGTACC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 1468
AspS9I GGNCC 3 cut(s) 4, 1032, 1286
AsuC2I CCSGG 2 cut(s) 506, 1338
AsuHPI GGTGA 2 cut(s) 38, 1387
AvaII GGWCC 3 cut(s) 4, 1032, 1286
BaeGI GKGCMC 1 cut(s) 1104
BanI GGYRCC 3 cut(s) 38, 721, 1182
BanII GRGCYC 1 cut(s) 1387
BbrPI CACGTG 1 cut(s) 1105
BbsI GAAGAC 2 cut(s) 444, 696
Bbv12I GWGCWC 2 cut(s) 424, 618
BbvI GCAGC 4 cut(s) 388, 559, 1129, 1442
BccI CCATC 3 cut(s) 74, 679, 923
BceAI ACGGC 2 cut(s) 105, 194
BcgI CGANNNNNNTGC 2 cut(s) 1409, 1443
BcnI CCSGG 2 cut(s) 506, 1338
BfaI CTAG 1 cut(s) 827
BfuAI ACCTGC 2 cut(s) 1031, 1363
BglII AGATCT 1 cut(s) 631
BisI GCNGC 4 cut(s) 377, 573, 1143, 1431
BlsI GCNGC 4 cut(s) 378, 574, 1144, 1432
Bme1390I CCNGG 2 cut(s) 506, 1338
Bme18I GGWCC 3 cut(s) 4, 1032, 1286
BmgT120I GGNCC 3 cut(s) 4, 1032, 1286
BmiI GGNNCC 4 cut(s) 40, 723, 1184, 1287
BmrFI CCNGG 2 cut(s) 506, 1338
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 3 cut(s) 859, 1154, 1411
BmuI ACTGGG 1 cut(s) 551
BpiI GAAGAC 2 cut(s) 444, 696
BpmI CTGGAG 2 cut(s) 246, 1227
BpuMI CCSGG 2 cut(s) 506, 1338
BsaAI YACGTR 2 cut(s) 1105, 1322
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 505, 565, 619, 970
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 670, 976
Bse118I RCCGGY 3 cut(s) 161, 891, 1245
Bse1I ACTGG 4 cut(s) 546, 615, 859, 1184
BseDI CCNNGG 4 cut(s) 505, 565, 619, 970
BseGI GGATG 5 cut(s) 66, 101, 256, 652, 874
BseLI CCNNNNNNNGG 3 cut(s) 25, 670, 976
BseMII CTCAG 2 cut(s) 1355, 1400
BseNI ACTGG 4 cut(s) 546, 615, 859, 1184
BseSI GKGCMC 1 cut(s) 1104
BseXI GCAGC 4 cut(s) 388, 559, 1129, 1442
BsgI GTGCAG 3 cut(s) 558, 797, 1391
Bsh1236I CGCG 3 cut(s) 107, 426, 842
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 4 cut(s) 831, 891, 895, 1212
BshNI GGYRCC 3 cut(s) 38, 721, 1182
BsiEI CGRYCG 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 424, 618
BsiSI CCGG 6 cut(s) 55, 162, 505, 892, 1246, 1337
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 3 cut(s) 25, 670, 976
BsmFI GGGAC 1 cut(s) 722
BsmI GAATGC 3 cut(s) 134, 822, 1433
BsnI GGCC 4 cut(s) 831, 891, 895, 1212
Bsp1286I GDGCHC 4 cut(s) 424, 618, 1104, 1387
Bsp143I GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
Bsp19I CCATGG 2 cut(s) 565, 970
BspACI CCGC 7 cut(s) 16, 105, 374, 397, 842, 884, 1071
BspANI GGCC 4 cut(s) 831, 891, 895, 1212
BspCNI CTCAG 2 cut(s) 1356, 1399
BspFNI CGCG 3 cut(s) 107, 426, 842
BspLI GGNNCC 4 cut(s) 40, 723, 1184, 1287
BspMI ACCTGC 2 cut(s) 1031, 1363
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 3 cut(s) 38, 721, 1182
BsrFI RCCGGY 3 cut(s) 161, 891, 1245
BsrI ACTGG 4 cut(s) 546, 615, 859, 1184
BssAI RCCGGY 3 cut(s) 161, 891, 1245
BssECI CCNNGG 4 cut(s) 505, 565, 619, 970
BssMI GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 3 cut(s) 565, 619, 970
Bst4CI ACNGT 5 cut(s) 34, 246, 371, 665, 721
BstACI GRCGYC 1 cut(s) 118
BstBAI YACGTR 2 cut(s) 1105, 1322
BstC8I GCNNGC 2 cut(s) 424, 893
BstDEI CTNAG 4 cut(s) 695, 1216, 1364, 1386
BstDSI CCRYGG 2 cut(s) 565, 970
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 5 cut(s) 66, 101, 256, 652, 874
BstFNI CGCG 3 cut(s) 107, 426, 842
BstHHI GCGC 1 cut(s) 1468
BstKTI GATC 8 cut(s) 193, 491, 634, 811, 949, 1093, 1276, 1380
BstMBI GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 5 cut(s) 578, 601, 828, 1189, 1430
BstNSI RCATGY 1 cut(s) 595
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 504, 1336
BstSLI GKGCMC 1 cut(s) 1104
BstUI CGCG 3 cut(s) 107, 426, 842
BstV1I GCAGC 4 cut(s) 388, 559, 1129, 1442
BstV2I GAAGAC 2 cut(s) 444, 696
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 4 cut(s) 831, 891, 895, 1212
BtgI CCRYGG 2 cut(s) 565, 970
BtgZI GCGATG 1 cut(s) 1434
BtsCI GGATG 5 cut(s) 66, 101, 256, 652, 874
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 2 cut(s) 988, 1361
BveI ACCTGC 2 cut(s) 1031, 1363
Cac8I GCNNGC 2 cut(s) 424, 893
CfoI GCGC 1 cut(s) 1468
Cfr10I RCCGGY 3 cut(s) 161, 891, 1245
Cfr13I GGNCC 3 cut(s) 4, 1032, 1286
CseI GACGC 2 cut(s) 126, 779
Csp6I GTAC 4 cut(s) 39, 550, 745, 1063
CviAII CATG 8 cut(s) 82, 412, 566, 592, 706, 971, 1029, 1469
CviQI GTAC 4 cut(s) 39, 550, 745, 1063
DdeI CTNAG 4 cut(s) 695, 1216, 1364, 1386
DpnI GATC 8 cut(s) 192, 490, 633, 810, 948, 1092, 1275, 1379
DpnII GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
DraI TTTAAA 1 cut(s) 240
DraIII CACNNNGTG 1 cut(s) 1367
EaeI YGGCCR 1 cut(s) 889
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 3 cut(s) 565, 619, 970
Eco147I AGGCCT 2 cut(s) 831, 1212
Eco24I GRGCYC 1 cut(s) 1387
Eco32I GATATC 1 cut(s) 701
Eco47I GGWCC 3 cut(s) 4, 1032, 1286
Eco72I CACGTG 1 cut(s) 1105
Eco91I GGTNACC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 1286
EcoO65I GGTNACC 1 cut(s) 28
EcoRV GATATC 1 cut(s) 701
EcoT14I CCWWGG 3 cut(s) 565, 619, 970
EcoT38I GRGCYC 1 cut(s) 1387
ErhI CCWWGG 3 cut(s) 565, 619, 970
FaeI CATG 8 cut(s) 85, 415, 569, 595, 709, 974, 1032, 1472
FaqI GGGAC 1 cut(s) 722
FatI CATG 8 cut(s) 81, 411, 565, 591, 705, 970, 1028, 1468
FauI CCCGC 2 cut(s) 23, 1064
Fnu4HI GCNGC 4 cut(s) 377, 573, 1143, 1431
FokI GGATG 5 cut(s) 53, 88, 243, 639, 881
FriOI GRGCYC 1 cut(s) 1387
FseI GGCCGGCC 1 cut(s) 895
Fsp4HI GCNGC 4 cut(s) 377, 573, 1143, 1431
FspAI RTGCGCAY 1 cut(s) 1467
FspBI CTAG 1 cut(s) 827
FspI TGCGCA 1 cut(s) 1467
GlaI GCGC 1 cut(s) 1467
GluI GCNGC 4 cut(s) 377, 573, 1143, 1431
GsuI CTGGAG 2 cut(s) 246, 1227
HaeIII GGCC 4 cut(s) 831, 891, 895, 1212
HapII CCGG 6 cut(s) 55, 162, 505, 892, 1246, 1337
HgaI GACGC 2 cut(s) 126, 779
HhaI GCGC 1 cut(s) 1468
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 8 cut(s) 85, 415, 569, 595, 709, 974, 1032, 1472
Hin6I GCGC 1 cut(s) 1466
HinP1I GCGC 1 cut(s) 1466
HincII GTYRAC 2 cut(s) 167, 343
HindII GTYRAC 2 cut(s) 167, 343
HinfI GANTC 2 cut(s) 481, 1478
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 6 cut(s) 55, 162, 505, 892, 1246, 1337
HphI GGTGA 2 cut(s) 38, 1387
Hpy166II GTNNAC 5 cut(s) 167, 304, 343, 552, 1396
Hpy188I TCNGA 5 cut(s) 176, 357, 532, 795, 1389
Hpy188III TCNNGA 6 cut(s) 205, 297, 434, 926, 1164, 1271
Hpy8I GTNNAC 5 cut(s) 167, 304, 343, 552, 1396
Hpy99I CGWCG 3 cut(s) 38, 120, 795
HpyAV CCTTC 7 cut(s) 19, 80, 324, 540, 670, 989, 1269
HpyCH4III ACNGT 5 cut(s) 34, 246, 371, 665, 721
HpyCH4IV ACGT 4 cut(s) 157, 345, 1104, 1321
HpyF10VI GCNNNNNNNGC 5 cut(s) 578, 601, 828, 1189, 1430
HpyF3I CTNAG 4 cut(s) 695, 1216, 1364, 1386
HpySE526I ACGT 4 cut(s) 157, 345, 1104, 1321
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 8 cut(s) 85, 415, 569, 595, 709, 974, 1032, 1472
HspAI GCGC 1 cut(s) 1466
KpnI GGTACC 1 cut(s) 42
KroI GCCGGC 1 cut(s) 891
KroNI GCCGGC 1 cut(s) 893
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
LmnI GCTCC 3 cut(s) 156, 569, 621
Lsp1109I GCAGC 4 cut(s) 388, 559, 1129, 1442
LweI GCATC 3 cut(s) 859, 1154, 1411
MaeI CTAG 1 cut(s) 827
MaeII ACGT 4 cut(s) 157, 345, 1104, 1321
MaeIII GTNAC 5 cut(s) 28, 84, 983, 1019, 1241
MalI GATC 8 cut(s) 192, 490, 633, 810, 948, 1092, 1275, 1379
MboI GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
MboII GAAGA 8 cut(s) 309, 395, 398, 444, 534, 701, 1087, 1246
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 4 cut(s) 424, 618, 1104, 1387
MluCI AATT 6 cut(s) 235, 390, 405, 499, 1250, 1413
MmeI TCCRAC 2 cut(s) 178, 773
MroNI GCCGGC 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 9 cut(s) 239, 272, 342, 366, 462, 498, 558, 876, 1080
MspI CCGG 6 cut(s) 55, 162, 505, 892, 1246, 1337
MspR9I CCNGG 2 cut(s) 506, 1338
Mva1269I GAATGC 3 cut(s) 134, 822, 1433
MvnI CGCG 3 cut(s) 107, 426, 842
MwoI GCNNNNNNNGC 5 cut(s) 578, 601, 828, 1189, 1430
NaeI GCCGGC 1 cut(s) 893
NciI CCSGG 2 cut(s) 506, 1338
NcoI CCATGG 2 cut(s) 565, 970
NdeII GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
NgoMIV GCCGGC 1 cut(s) 891
NlaIII CATG 8 cut(s) 85, 415, 569, 595, 709, 974, 1032, 1472
NlaIV GGNNCC 4 cut(s) 40, 723, 1184, 1287
NmuCI GTSAC 2 cut(s) 983, 1019
NsbI TGCGCA 1 cut(s) 1467
NspI RCATGY 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 1363
PceI AGGCCT 2 cut(s) 831, 1212
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 3 cut(s) 134, 822, 1433
PdiI GCCGGC 1 cut(s) 893
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 481, 1478
PkrI GCNGC 4 cut(s) 378, 574, 1144, 1432
PmaCI CACGTG 1 cut(s) 1105
PmlI CACGTG 1 cut(s) 1105
Ppu21I YACGTR 2 cut(s) 1105, 1322
PpuMI RGGWCCY 1 cut(s) 1286
Psp1406I AACGTT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 1286
PspCI CACGTG 1 cut(s) 1105
PspEI GGTNACC 1 cut(s) 28
PspN4I GGNNCC 4 cut(s) 40, 723, 1184, 1287
PspPI GGNCC 3 cut(s) 4, 1032, 1286
PspPPI RGGWCCY 1 cut(s) 1286
PsrI GAACNNNNNNTAC 2 cut(s) 1392, 1424
PsuI RGATCY 1 cut(s) 631
RigI GGCCGGCC 1 cut(s) 895
RsaI GTAC 4 cut(s) 40, 551, 746, 1064
RsaNI GTAC 4 cut(s) 39, 550, 745, 1063
SaqAI TTAA 9 cut(s) 239, 272, 342, 366, 462, 498, 558, 876, 1080
SatI GCNGC 4 cut(s) 377, 573, 1143, 1431
Sau3AI GATC 8 cut(s) 190, 488, 631, 808, 946, 1090, 1273, 1377
Sau96I GGNCC 3 cut(s) 4, 1032, 1286
ScrFI CCNGG 2 cut(s) 506, 1338
SduI GDGCHC 4 cut(s) 424, 618, 1104, 1387
SfaNI GCATC 3 cut(s) 859, 1154, 1411
SinI GGWCC 3 cut(s) 4, 1032, 1286
Sse9I AATT 6 cut(s) 235, 390, 405, 499, 1250, 1413
SseBI AGGCCT 2 cut(s) 831, 1212
SsiI CCGC 7 cut(s) 16, 105, 374, 397, 842, 884, 1071
SspI AATATT 2 cut(s) 276, 443
SspMI CTAG 1 cut(s) 827
StuI AGGCCT 2 cut(s) 831, 1212
StyD4I CCNGG 2 cut(s) 504, 1336
StyI CCWWGG 3 cut(s) 565, 619, 970
TaaI ACNGT 5 cut(s) 34, 246, 371, 665, 721
TaiI ACGT 4 cut(s) 160, 348, 1107, 1324
TaqI TCGA 2 cut(s) 537, 898
TasI AATT 6 cut(s) 235, 390, 405, 499, 1250, 1413
TatI WGTACW 2 cut(s) 744, 1062
TfiI GAWTC 2 cut(s) 481, 1478
Tru1I TTAA 9 cut(s) 239, 272, 342, 366, 462, 498, 558, 876, 1080
Tru9I TTAA 9 cut(s) 239, 272, 342, 366, 462, 498, 558, 876, 1080
TscAI CASTG 2 cut(s) 988, 1368
TseFI GTSAC 2 cut(s) 983, 1019
TseI GCWGC 4 cut(s) 376, 572, 1142, 1430
Tsp45I GTSAC 2 cut(s) 983, 1019
TspDTI ATGAA 7 cut(s) 400, 634, 641, 722, 1017, 1367, 1485
TspGWI ACGGA 2 cut(s) 645, 881
TspRI CASTG 2 cut(s) 988, 1368
VpaK11BI GGWCC 3 cut(s) 4, 1032, 1286
XapI RAATTY 3 cut(s) 235, 390, 405
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.