Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2262128 .. 2264268

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGTCCAAAGGGGTTTGGCAGAGAAACTGATAGAGAATTTTCAAAGCGACCTGATGAAGGAAACCCACTAGACCTCAACAACTTGCCTGAGGATCATTACGGCAGAGATGGCCAACAATATGCCGACGTCAGCTCCTCCGGCAGCTACAGAAAAAAGAAAAACGGCGCAAAAGATGGAAATGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCCCAGGCCCTCGGGGGACACATGAACCGCCACCGTCAAGAAAGGGAGACAGAACAACTAAACCAGGCTCGTCAGTTGGTTTTCAATAACGATAACCTAGCCGCCCCTCCTCCTCACCTTGGATGCTGCCATCCGATTCCGCCAGGAGGGTATCATCATCCGGCTGCTACAGGTAACAACATTGGTGGTGCTGATCCAACATTACCTCTCAGATTCCCACCAAGAATGTTTTCTGCCTCTTCATCAAACACCCTTATACCACCGCCACTGCCACCGCAGGGAGGTGTACAAGTACAACCCCCTCAACCCTACTTATATCCGTCTCCGTCACGGTCCAGGCCCTTCCCTACTTCTTCGCACTACCCTCATCATCAAGTCAATGACTATTATGTTGGACATGTTCTTATCAACAACACTACTCGTACTCCTTCATACGGGCATCCAAATGTGAACTACGGAGTGGCACCAGCGGAGTCCACCAACTACACTTGCATTGGAGCGCCTGTGGGAGCAGGAGGCGGTGGAGGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGGTAGAGACGGATCGCTGCACGTGAATCAAGAAGAAGCATTGAATTGGAGCAGGAGCTACGCAGGGACTCCTCCTTCGATCAATCGATTTCAACATGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010093 GO:0010094 GO:0010097 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048462 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

32.02

Weight (kDa)

8.48

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13400 AT1G68480 AT1G68480 AT1G68480
fragaria_vesca	FvH4_4g27300 FvH4_4g27300
malus_domestica	MD13G1040900.v1.1 MD16G1042200.v1.1
prunus_persica	Prupe.1G311900_v2.0.a1
pyrus_communis	pycom13g03530 pycom16g03650
rosa_chinensis	RchiOBHm_Chr4g0435091
rosa_laevigata	RLG00000006621
rosa_roxburghii	Rroxscaffold_5G00376280
rosa_rugosa	Rorug04G0282300 Rorug04G0282300
rosa_samantha	Rh4AG337800 Rh4BG345700 Rh4CG360400 Rh4DG340300
rosa_wichuraiana	Rw4G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	7 cut(s)	265, 339, 377, 500, 512, 707, 756
AclWI	GGATC	3 cut(s)	102, 425, 814
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	817
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	525, 531, 661
AfiI	CCNNNNNNNGG	6 cut(s)	59, 356, 383, 515, 518, 671
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	45, 322, 838, 887
AjnI	CCWGG	4 cut(s)	240, 300, 379, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	135, 147, 852
AluI	AGCT	3 cut(s)	135, 147, 852
Alw26I	GTCTC	3 cut(s)	278, 564, 795
AlwI	GGATC	3 cut(s)	102, 425, 814
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	112, 243, 575
ApeKI	GCWGC	4 cut(s)	144, 363, 401, 811
ApoI	RAATTY	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	853, 885
Asp700I	GAANNNNTTC	1 cut(s)	466
AspLEI	GCGC	2 cut(s)	170, 739
AspS9I	GGNCC	3 cut(s)	244, 570, 576
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	570
AxyI	CCTNAGG	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	700
BbrPI	CACGTG	1 cut(s)	817
BbvI	GCAGC	4 cut(s)	156, 350, 388, 798
BccI	CCATC	3 cut(s)	104, 170, 375
BceAI	ACGGC	2 cut(s)	118, 181
BciT130I	CCWGG	4 cut(s)	242, 302, 381, 574
BcoDI	GTCTC	3 cut(s)	278, 564, 795
BfaI	CTAG	2 cut(s)	71, 335
BfmI	CTRYAG	2 cut(s)	148, 405
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	5 cut(s)	145, 339, 364, 402, 812
BlsI	GCNGC	5 cut(s)	146, 340, 365, 403, 813
Bme1390I	CCNGG	4 cut(s)	242, 302, 381, 574
Bme18I	GGWCC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	244, 570, 576
BmiI	GGNNCC	2 cut(s)	702, 895
BmrFI	CCNGG	4 cut(s)	242, 302, 381, 574
BmsI	GCATC	2 cut(s)	350, 685
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	880
BsaAI	YACGTR	1 cut(s)	817
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	240, 247, 355
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 646, 676, 726, 756
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 356, 383, 515, 518, 671
Bse21I	CCTNAGG	1 cut(s)	90
BseBI	CCWGG	4 cut(s)	242, 302, 381, 574
BseCI	ATCGAT	1 cut(s)	880
BseDI	CCNNGG	3 cut(s)	240, 247, 355
BseGI	GGATG	4 cut(s)	365, 367, 394, 676
BseLI	CCNNNNNNNGG	6 cut(s)	59, 356, 383, 515, 518, 671
BseMII	CTCAG	2 cut(s)	81, 460
BseRI	GAGGAG	4 cut(s)	127, 336, 339, 855
BseXI	GCAGC	4 cut(s)	156, 350, 388, 798
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	3 cut(s)	114, 245, 577
BshNI	GGYRCC	1 cut(s)	700
BshVI	ATCGAT	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	141, 398
BslFI	GGGAC	2 cut(s)	267, 874
BslI	CCNNNNNNNGG	6 cut(s)	59, 356, 383, 515, 518, 671
BsmAI	GTCTC	3 cut(s)	278, 564, 795
BsmBI	CGTCTC	2 cut(s)	564, 795
BsmFI	GGGAC	2 cut(s)	267, 874
BsnI	GGCC	3 cut(s)	114, 245, 577
BsoBI	CYCGRG	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	4 cut(s)	94, 430, 806, 873
BspACI	CCGC	7 cut(s)	265, 339, 377, 500, 512, 707, 756
BspANI	GGCC	3 cut(s)	114, 245, 577
BspCNI	CTCAG	2 cut(s)	82, 459
BspDI	ATCGAT	1 cut(s)	880
BspLI	GGNNCC	2 cut(s)	702, 895
BspPI	GGATC	3 cut(s)	102, 425, 814
BspT107I	GGYRCC	1 cut(s)	700
BsrGI	TGTACA	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	240, 247, 355
BssMI	GATC	4 cut(s)	94, 430, 806, 873
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	4 cut(s)	242, 302, 381, 574
Bst4CI	ACNGT	2 cut(s)	272, 570
Bst6I	CTCTTC	1 cut(s)	481
BstACI	GRCGYC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	817
BstDEI	CTNAG	2 cut(s)	90, 446
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	365, 367, 394, 676
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	170, 739
BstKTI	GATC	4 cut(s)	97, 433, 809, 876
BstMAI	GTCTC	3 cut(s)	278, 564, 795
BstMBI	GATC	4 cut(s)	94, 430, 806, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 141
BstNI	CCWGG	4 cut(s)	242, 302, 381, 574
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	4 cut(s)	240, 300, 379, 572
BstSFI	CTRYAG	2 cut(s)	148, 405
BstV1I	GCAGC	4 cut(s)	156, 350, 388, 798
Bsu15I	ATCGAT	1 cut(s)	880
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	114, 245, 577
BsuTUI	ATCGAT	1 cut(s)	880
BtsCI	GGATG	4 cut(s)	365, 367, 394, 676
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	503
CfoI	GCGC	2 cut(s)	170, 739
Cfr13I	GGNCC	3 cut(s)	244, 570, 576
ClaI	ATCGAT	1 cut(s)	880
Csp6I	GTAC	3 cut(s)	524, 530, 660
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	3 cut(s)	259, 635, 890
CviQI	GTAC	3 cut(s)	524, 530, 660
DdeI	CTNAG	2 cut(s)	90, 446
DpnI	GATC	4 cut(s)	96, 432, 808, 875
DpnII	GATC	4 cut(s)	94, 430, 806, 873
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	570
Eco72I	CACGTG	1 cut(s)	817
Eco81I	CCTNAGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	244, 576
EcoRII	CCWGG	4 cut(s)	240, 300, 379, 572
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	2 cut(s)	564, 795
FaeI	CATG	3 cut(s)	262, 638, 893
FaiI	YATR	8 cut(s)	123, 260, 494, 553, 627, 636, 670, 891
FaqI	GGGAC	2 cut(s)	267, 874
FatI	CATG	3 cut(s)	258, 634, 889
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	145, 339, 364, 402, 812
FokI	GGATG	4 cut(s)	354, 372, 381, 663
Fsp4HI	GCNGC	5 cut(s)	145, 339, 364, 402, 812
FspBI	CTAG	2 cut(s)	71, 335
GlaI	GCGC	2 cut(s)	169, 738
GluI	GCNGC	5 cut(s)	145, 339, 364, 402, 812
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	114, 245, 577
HapII	CCGG	2 cut(s)	141, 398
HhaI	GCGC	2 cut(s)	170, 739
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	262, 638, 893
Hin6I	GCGC	2 cut(s)	168, 737
HinP1I	GCGC	2 cut(s)	168, 737
HinfI	GANTC	6 cut(s)	4, 373, 450, 710, 820, 862
HpaII	CCGG	2 cut(s)	141, 398
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	4 cut(s)	202, 524, 688, 714
Hpy188I	TCNGA	2 cut(s)	372, 449
Hpy188III	TCNNGA	2 cut(s)	275, 824
Hpy8I	GTNNAC	4 cut(s)	202, 524, 688, 714
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	53, 190, 589, 675, 879
HpyCH4III	ACNGT	2 cut(s)	272, 570
HpyCH4IV	ACGT	2 cut(s)	129, 816
HpyCH4V	TGCA	3 cut(s)	234, 729, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 141
HpyF3I	CTNAG	2 cut(s)	90, 446
HpySE526I	ACGT	2 cut(s)	129, 816
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	262, 638, 893
HspAI	GCGC	2 cut(s)	168, 737
Kzo9I	GATC	4 cut(s)	94, 430, 806, 873
LmnI	GCTCC	7 cut(s)	140, 224, 734, 746, 843, 849, 899
Lsp1109I	GCAGC	4 cut(s)	156, 350, 388, 798
LweI	GCATC	2 cut(s)	350, 685
MaeI	CTAG	2 cut(s)	71, 335
MaeII	ACGT	2 cut(s)	129, 816
MaeIII	GTNAC	2 cut(s)	410, 564
MalI	GATC	4 cut(s)	96, 432, 808, 875
MboI	GATC	4 cut(s)	94, 430, 806, 873
MboII	GAAGA	3 cut(s)	468, 582, 839
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	2 cut(s)	38, 838
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	13, 719, 856
MmeI	TCCRAC	2 cut(s)	458, 610
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	2 cut(s)	141, 398
MspR9I	CCNGG	4 cut(s)	242, 302, 381, 574
MvaI	CCWGG	4 cut(s)	242, 302, 381, 574
MwoI	GCNNNNNNNGC	2 cut(s)	111, 141
NdeII	GATC	4 cut(s)	94, 430, 806, 873
NlaIII	CATG	3 cut(s)	262, 638, 893
NlaIV	GGNNCC	2 cut(s)	702, 895
NmuCI	GTSAC	1 cut(s)	564
NspI	RCATGY	1 cut(s)	638
PciI	ACATGT	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	373, 450, 820
PkrI	GCNGC	5 cut(s)	146, 340, 365, 403, 813
PleI	GAGTC	3 cut(s)	12, 718, 856
PmaCI	CACGTG	1 cut(s)	817
PmlI	CACGTG	1 cut(s)	817
PpsI	GAGTC	3 cut(s)	12, 718, 856
Ppu21I	YACGTR	1 cut(s)	817
PscI	ACATGT	1 cut(s)	634
Psp6I	CCWGG	4 cut(s)	240, 300, 379, 572
PspCI	CACGTG	1 cut(s)	817
PspGI	CCWGG	4 cut(s)	240, 300, 379, 572
PspN4I	GGNNCC	2 cut(s)	702, 895
PspPI	GGNCC	3 cut(s)	244, 570, 576
RsaI	GTAC	3 cut(s)	525, 531, 661
RsaNI	GTAC	3 cut(s)	524, 530, 660
RseI	CAYNNNNRTG	1 cut(s)	681
SatI	GCNGC	5 cut(s)	145, 339, 364, 402, 812
Sau3AI	GATC	4 cut(s)	94, 430, 806, 873
Sau96I	GGNCC	3 cut(s)	244, 570, 576
SchI	GAGTC	3 cut(s)	13, 719, 856
ScrFI	CCNGG	4 cut(s)	242, 302, 381, 574
SfaNI	GCATC	2 cut(s)	350, 685
SfcI	CTRYAG	2 cut(s)	148, 405
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	38, 838
SsiI	CCGC	7 cut(s)	265, 339, 377, 500, 512, 707, 756
SspMI	CTAG	2 cut(s)	71, 335
StyD4I	CCNGG	4 cut(s)	240, 300, 379, 572
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	272, 570
TaiI	ACGT	2 cut(s)	132, 819
TaqI	TCGA	2 cut(s)	872, 880
TasI	AATT	2 cut(s)	38, 838
TatI	WGTACW	2 cut(s)	523, 529
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	373, 450, 820
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	564
TseI	GCWGC	4 cut(s)	144, 363, 401, 811
Tsp45I	GTSAC	1 cut(s)	564
TspDTI	ATGAA	4 cut(s)	72, 275, 468, 657
TspGWI	ACGGA	4 cut(s)	546, 552, 708, 819
TspRI	CASTG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	2 cut(s)	71, 335
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.