Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008036

Physical Location & Seq

Genomic Coordinates Forward (+)

2321592 .. 2323016

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAGCGGATGTGGGGAAGGTGGGTTATCTGTGGGAGTTGAATGGAGCCAAGGAAAGGCTCGAGTTGTGGAAAGCTGATTTGATGGTGGAAGGAAGCTTTGATGAGGCTGTACGAGGCGTCGATGGAGTCTTCCACGCTGTATCGCCCGAGGCATGGAGAATTGCCGAGGAGAGCAGAATGGATCTCGTGGTGGTGAATCCGTCGTTCATGGTTGGTCCTCTGCTAGCACCACAACCAACCAGCACACTATATATGATACTTGCTATACTAACAGTGAATATGCCGTTTGGTTCAAGAGGGGAGTTCCCGAACACGACAGTCGGATTTGTGCACATAGATGATGTGGTGGCTGCGCACATTTTAGCAATGGTGGAAAGCAAAGCGTCGGGAAGGCTGATATGTTCGAGCTCGGTTGCGCACTGGTCGGAGATCAATGAGATGTTGAGGGCCAAATATCCATCCTATCCATATGAAAACAATATGGAAACCAGTAAAACAGCACAACTGGTATTTCCACCTTTCAAAACGCTTGAAACAATGTTTGATGACTGCATCACTAGTTTCCAACAGAAGCGATTTTTGATTTCTATGAACGAATCGCACAAGGCGTTGCCCTTGAGTGCGTTCCAAGTTTCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0019438 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

215

Amino Acids

23.84

Weight (kDa)

5.11

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25460 AT1G68540 AT1G68540
fragaria_vesca	FvH4_4g27430 FvH4_4g27430
malus_domestica	MD13G1042500.v1.1 MD16G1043400.v1.1
prunus_persica	Prupe.1G310300_v2.0.a1
pyrus_communis	pycom13g03700 pycom13g03710 pycom13g03720 pycom16g03750
rosa_chinensis	RchiOBHm_Chr4g0435251
rosa_laevigata	RLG00000006604
rosa_multiflora	Rmu_sc0002132.1_g000069
rosa_roxburghii	Rroxscaffold_5G00376540
rosa_rugosa	Rorug04G0284000 Rorug04G0284100
rosa_samantha	Rh4AG339300 Rh4BG347700 Rh4CG362300 Rh4CG362400 Rh4DG341800
rosa_wichuraiana	Rw4G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	357, 420
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	57, 156
AgsI	TTSAA	4 cut(s)	43, 297, 526, 536
AhlI	ACTAGT	1 cut(s)	560
AluBI	AGCT	3 cut(s)	77, 99, 411
AluI	AGCT	3 cut(s)	77, 99, 411
Alw21I	GWGCWC	2 cut(s)	336, 413
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	2 cut(s)	62, 149
AoxI	GGCC	1 cut(s)	450
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	358, 421
AspS9I	GGNCC	2 cut(s)	218, 450
AsuHPI	GGTGA	1 cut(s)	208
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	2 cut(s)	62, 149
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	336, 413
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	79, 119, 469
BceAI	ACGGC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	2 cut(s)	227, 561
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	2 cut(s)	62, 149
BmgT120I	GGNCC	2 cut(s)	218, 450
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	564
BmtI	GCTAGC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	640
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	51, 150, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 156
Bse1I	ACTGG	3 cut(s)	428, 492, 513
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	51, 150, 168
BseGI	GGATG	2 cut(s)	16, 461
BseLI	CCNNNNNNNGG	2 cut(s)	57, 156
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	428, 492, 513
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	336, 413
BsiHKCI	CYCGRG	2 cut(s)	62, 149
BslI	CCNNNNNNNGG	2 cut(s)	57, 156
BsnI	GGCC	1 cut(s)	452
BsoBI	CYCGRG	2 cut(s)	62, 149
Bsp1286I	GDGCHC	2 cut(s)	336, 413
Bsp143I	GATC	2 cut(s)	184, 432
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	49
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	428, 492, 513
BssECI	CCNNGG	3 cut(s)	51, 150, 168
BssMI	GATC	2 cut(s)	184, 432
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	277, 322
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	16, 461
BstHHI	GCGC	2 cut(s)	358, 421
BstKTI	GATC	2 cut(s)	187, 435
BstMBI	GATC	2 cut(s)	184, 432
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	16, 461
BtsIMutI	CAGTG	2 cut(s)	282, 421
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	2 cut(s)	358, 421
Cfr13I	GGNCC	2 cut(s)	218, 450
CseI	GACGC	2 cut(s)	109, 375
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	156, 211
CviJI	RGCY	9 cut(s)	50, 61, 77, 99, 110, 353, 397, 411, 452
CviKI_1	RGCY	9 cut(s)	50, 61, 77, 99, 110, 353, 397, 411, 452
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	186, 434
DpnII	GATC	2 cut(s)	184, 432
Ecl136II	GAGCTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	62, 149
EcoICRI	GAGCTC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	159, 214
FatI	CATG	2 cut(s)	155, 210
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	23, 448
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	227, 561
FspI	TGCGCA	2 cut(s)	357, 420
GlaI	GCGC	2 cut(s)	357, 420
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	452
HgaI	GACGC	2 cut(s)	109, 375
HhaI	GCGC	2 cut(s)	358, 421
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	159, 214
Hin6I	GCGC	2 cut(s)	356, 419
HinP1I	GCGC	2 cut(s)	356, 419
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	129, 199, 599
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	326, 430
Hpy188III	TCNNGA	3 cut(s)	297, 310, 390
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	125, 208, 391
HpyAV	CCTTC	3 cut(s)	13, 86, 387
HpyCH4III	ACNGT	2 cut(s)	277, 322
HpyCH4V	TGCA	2 cut(s)	334, 555
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	159, 214
HspAI	GCGC	2 cut(s)	356, 419
Kzo9I	GATC	2 cut(s)	184, 432
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	256, 409, 494, 505
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	227, 561
MalI	GATC	2 cut(s)	186, 434
MboI	GATC	2 cut(s)	184, 432
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	336, 413
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	3 cut(s)	304, 408, 592
MnlI	CCTC	7 cut(s)	100, 110, 145, 163, 231, 293, 441
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	184, 432
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	159, 214
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	193
NsbI	TGCGCA	2 cut(s)	357, 420
PaeR7I	CTCGAG	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	199, 599
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	218, 450
PspXI	VCTCGAGB	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	413
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	184, 432
Sau96I	GGNCC	2 cut(s)	218, 450
SchI	GAGTC	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	336, 413
SetI	ASST	5 cut(s)	24, 79, 101, 413, 523
SfaNI	GCATC	1 cut(s)	564
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	62, 619
SmoI	CTYRAG	2 cut(s)	62, 619
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	227, 561
SstI	GAGCTC	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	277, 322
TaqI	TCGA	3 cut(s)	63, 123, 407
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	199, 599
TscAI	CASTG	2 cut(s)	282, 428
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	199, 489, 608
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	282, 428
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	62
XspI	CTAG	2 cut(s)	227, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.