pycom16g05030

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001984
Physical Location & Seq
Forward (+)
3243018 .. 3247481
4464 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1347 bp
ATGATTAATGTGTTGAATCACAAAAATTTGAATTTGGATTTTCATATCGATCCAATTATCTTGGGGGCAAGTTTACAAGCATGTATGATTGTATTCAGTGATGGGTTGGTTGTACTGAGGCTTATTTGGATTTTGTTTCGAAGCGAAAAATCGAAGCTTTATTTGGAAGAGATGGGGTATATTGGGGCACATGGTGTGGCTGCTTTGCATAAATACAAGTACAGTGGCGTGGATCACTCTTACACTGCCAAATATGTCTTGCAACCCTTTTGGAGTAGCTTCGTTAAAATCTTTCCTCTTTGGATGCCGCCCAACATGATAACTTTAACAGGATTCATGTTCTTGCTCACATCCGCTCTGCTTGGCTATATATATTCACCACGACTGGATTCAGCTCCTCCTAGATGGGTTAATTTCACTCATGGATTGCTACTTTTCTTATACCAGACCTTTGATGCCGTTGATGGGAAACAAGCAAGACGGACAAATTCGTCAAGTCCACTGGGGGAACTTTTTGACCATGGTTGTGATGCCCTTGCCTGTGCGTTCGAAGCATTGGCCTTTGGAAGTACTGCGATGTGTGGAAGATCTACTTTCTGGTTCTGGGTGATTTCAGCTGTTCCATTTTACTTTGCTACTTGGGAGTCTTACTTTACCAATACCCTAATCCTTCCTGCTGTTAATGGACCCACGGAGGGTCTAATGCTGATATATTTTGCCCATTTTTTCACAGCTATCGTTGGTTCTGAGTGGTGGGCTCTACAATTTGGAAAGTCTTTGCCTTTTCTGAGTTGGGTCCCCGTTCTTAGTGAAATCCCAACATACAAAGCTGTGTTGTATCTAATGATAGCTTTTGCTGTCATCCCAACGCTCACATTCAATGTGTCCAATGTTCATAAGGTTGTTCAAGCAAGGAAAGCAAGTATGCTATTGGCACTGGCAATGATTTACCCTTTTGTAGTCCTTTTGGTAGGAGTTTTGGCATGGGGTTACTTGTCACCAGCTGACATTATGGGGAACTATCCACATTTAGTCGTTCTGGGAAGTGGGCTTGCTTTTGGGTACCTTGTGGTAAGATATCCATTGATTCTTGCGCACTTGTGTGATGAGCCAAAGGGTTTGAAAACTGGAATGTGCATGTCATTGTTGTATCTTCCATTTGCCATTGCAAATGCACTCACAGCTAAACTGAACGATGGAGTTCCTTTGGTTGATGAGAGCTTGGTTCTTCTTGGTTACTGTGCATTTACAGCGACGCTCTATCTTCACTTTGCAACGTCAGTCGTTCACGAGATCACAACAGCCTTGGGAATCTATTGCTTTAGGATAACTAGGAAGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko00565 ko01100 ko01110 map00440 map00564 map00565 map01100 map01110
Pfam Domains
Protein Families
CDP-OH_P_transf

Protein Analysis

449

Amino Acids

49.98

Weight (kDa)

7.63

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 102 - 209 7.2e-09 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 490
Acc16I TGCGCA 1 cut(s) 1095
Acc65I GGTACC 1 cut(s) 1062
AccB1I GGYRCC 1 cut(s) 1062
AccBSI CCGCTC 1 cut(s) 356
AciI CCGC 2 cut(s) 308, 354
AclWI GGATC 2 cut(s) 44, 240
AcsI RAATTY 3 cut(s) 25, 31, 487
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 4 cut(s) 114, 221, 571, 1064
AfiI CCNNNNNNNGG 2 cut(s) 465, 695
AgsI TTSAA 5 cut(s) 16, 31, 880, 908, 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AleI CACNNNNGTG 1 cut(s) 1101
AlwI GGATC 2 cut(s) 44, 240
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 3 cut(s) 25, 31, 487
AseI ATTAAT 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 2 cut(s) 686, 796
AsuHPI GGTGA 3 cut(s) 369, 619, 990
AsuII TTCGAA 2 cut(s) 139, 549
AvaII GGWCC 2 cut(s) 686, 796
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 760
BauI CACGAG 1 cut(s) 1289
BbvI GCAGC 1 cut(s) 187
BccI CCATC 5 cut(s) 95, 166, 399, 458, 1190
BceAI ACGGC 1 cut(s) 443
BfaI CTAG 2 cut(s) 402, 1332
BglII AGATCT 1 cut(s) 587
BisI GCNGC 2 cut(s) 201, 308
BlsI GCNGC 2 cut(s) 202, 309
BmcAI AGTACT 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 686, 796
BmgT120I GGNCC 2 cut(s) 686, 796
BmiI GGNNCC 4 cut(s) 688, 797, 798, 1064
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 3 cut(s) 294, 445, 520
BmuI ACTGGG 1 cut(s) 512
Bpu14I TTCGAA 2 cut(s) 139, 549
Bsa29I ATCGAT 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 520, 690, 1305
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 695
Bse1I ACTGG 4 cut(s) 390, 507, 942, 1132
Bse3DI GCAATG 2 cut(s) 948, 1164
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 520, 690, 1305
BseGI GGATG 3 cut(s) 309, 350, 861
BseLI CCNNNNNNNGG 2 cut(s) 465, 695
BseMI GCAATG 2 cut(s) 948, 1164
BseMII CTCAG 3 cut(s) 107, 738, 779
BseNI ACTGG 4 cut(s) 390, 507, 942, 1132
BseRI GAGGAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 1062
BshVI ATCGAT 1 cut(s) 48
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 465, 695
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 1 cut(s) 560
Bsp119I TTCGAA 2 cut(s) 139, 549
Bsp1286I GDGCHC 2 cut(s) 190, 760
Bsp143I GATC 4 cut(s) 49, 232, 587, 1293
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 2 cut(s) 308, 354
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 3 cut(s) 108, 739, 780
BspDI ATCGAT 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 688, 797, 798, 1064
BspPI GGATC 2 cut(s) 44, 240
BspT104I TTCGAA 2 cut(s) 139, 549
BspT107I GGYRCC 1 cut(s) 1062
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 2 cut(s) 948, 1164
BsrI ACTGG 4 cut(s) 390, 507, 942, 1132
BssECI CCNNGG 3 cut(s) 520, 690, 1305
BssMI GATC 4 cut(s) 49, 232, 587, 1293
BssSI CACGAG 1 cut(s) 1289
BssT1I CCWWGG 2 cut(s) 520, 1305
Bst2BI CACGAG 1 cut(s) 1289
Bst4CI ACNGT 2 cut(s) 224, 1241
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 2 cut(s) 139, 549
BstC8I GCNNGC 1 cut(s) 1053
BstDEI CTNAG 4 cut(s) 116, 747, 788, 806
BstDSI CCRYGG 2 cut(s) 520, 690
BstF5I GGATG 3 cut(s) 309, 350, 861
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 4 cut(s) 52, 235, 590, 1296
BstMBI GATC 4 cut(s) 49, 232, 587, 1293
BstMWI GCNNNNNNNGC 4 cut(s) 551, 917, 1181, 1250
BstNSI RCATGY 2 cut(s) 84, 1141
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 1 cut(s) 560
BsuTUI ATCGAT 1 cut(s) 48
BtgI CCRYGG 2 cut(s) 520, 690
BtgZI GCGATG 1 cut(s) 590
BtsCI GGATG 3 cut(s) 309, 350, 861
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 5 cut(s) 103, 229, 243, 500, 935
Cac8I GCNNGC 1 cut(s) 1053
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 686, 796
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 1 cut(s) 1264
Csp6I GTAC 4 cut(s) 113, 220, 570, 1063
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 8 cut(s) 81, 191, 316, 337, 422, 521, 984, 1138
CviQI GTAC 4 cut(s) 113, 220, 570, 1063
DdeI CTNAG 4 cut(s) 116, 747, 788, 806
DpnI GATC 4 cut(s) 51, 234, 589, 1295
DpnII GATC 4 cut(s) 49, 232, 587, 1293
DraIII CACNNNGTG 1 cut(s) 194
DrdI GACNNNNNNGTC 1 cut(s) 490
DseDI GACNNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 520, 1305
Eco24I GRGCYC 1 cut(s) 760
Eco32I GATATC 1 cut(s) 1079
Eco47I GGWCC 2 cut(s) 686, 796
EcoO109I RGGNCCY 1 cut(s) 796
EcoRV GATATC 1 cut(s) 1079
EcoT14I CCWWGG 2 cut(s) 520, 1305
EcoT38I GRGCYC 1 cut(s) 760
ErhI CCWWGG 2 cut(s) 520, 1305
FaeI CATG 8 cut(s) 84, 194, 319, 340, 425, 524, 987, 1141
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 1 cut(s) 782
FatI CATG 8 cut(s) 80, 190, 315, 336, 421, 520, 983, 1137
Fnu4HI GCNGC 2 cut(s) 201, 308
FokI GGATG 3 cut(s) 316, 337, 848
FriOI GRGCYC 1 cut(s) 760
Fsp4HI GCNGC 2 cut(s) 201, 308
FspBI CTAG 2 cut(s) 402, 1332
FspI TGCGCA 1 cut(s) 1095
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 2 cut(s) 201, 308
HaeIII GGCC 1 cut(s) 560
HgaI GACGC 1 cut(s) 1264
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 8 cut(s) 84, 194, 319, 340, 425, 524, 987, 1141
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HindIII AAGCTT 2 cut(s) 155, 1341
HinfI GANTC 6 cut(s) 16, 333, 389, 644, 1087, 1311
HphI GGTGA 3 cut(s) 369, 619, 990
Hpy166II GTNNAC 3 cut(s) 74, 500, 1288
Hpy188I TCNGA 2 cut(s) 748, 789
Hpy188III TCNNGA 1 cut(s) 1289
Hpy8I GTNNAC 3 cut(s) 74, 500, 1288
Hpy99I CGWCG 1 cut(s) 1258
HpyAV CCTTC 2 cut(s) 680, 1330
HpyCH4III ACNGT 2 cut(s) 224, 1241
HpyCH4IV ACGT 1 cut(s) 1277
HpyCH4V TGCA 7 cut(s) 208, 262, 1137, 1169, 1175, 1244, 1274
HpyF10VI GCNNNNNNNGC 4 cut(s) 551, 917, 1181, 1250
HpyF3I CTNAG 4 cut(s) 116, 747, 788, 806
HpySE526I ACGT 1 cut(s) 1277
Hsp92II CATG 8 cut(s) 84, 194, 319, 340, 425, 524, 987, 1141
HspAI GCGC 1 cut(s) 1094
KflI GGGWCCC 1 cut(s) 796
KpnI GGTACC 1 cut(s) 1066
Kzo9I GATC 4 cut(s) 49, 232, 587, 1293
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 294, 445, 520
MaeI CTAG 2 cut(s) 402, 1332
MaeII ACGT 1 cut(s) 1277
MaeIII GTNAC 3 cut(s) 989, 996, 1235
MalI GATC 4 cut(s) 51, 234, 589, 1295
MbiI CCGCTC 1 cut(s) 356
MboI GATC 4 cut(s) 49, 232, 587, 1293
MboII GAAGA 5 cut(s) 179, 597, 1145, 1220, 1256
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 2 cut(s) 190, 760
MluCI AATT 6 cut(s) 25, 31, 54, 412, 487, 764
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 4 cut(s) 111, 306, 408, 688
MseI TTAA 5 cut(s) 6, 285, 326, 411, 681
MslI CAYNNNNRTG 2 cut(s) 525, 1101
MspA1I CMGCKG 2 cut(s) 617, 1004
MwoI GCNNNNNNNGC 4 cut(s) 551, 917, 1181, 1250
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 49, 232, 587, 1293
NlaIII CATG 8 cut(s) 84, 194, 319, 340, 425, 524, 987, 1141
NlaIV GGNNCC 4 cut(s) 688, 797, 798, 1064
NmuCI GTSAC 1 cut(s) 996
NsbI TGCGCA 1 cut(s) 1095
NspI RCATGY 2 cut(s) 84, 1141
NspV TTCGAA 2 cut(s) 139, 549
OliI CACNNNNGTG 1 cut(s) 1101
PfeI GAWTC 5 cut(s) 16, 333, 389, 1087, 1311
PkrI GCNGC 2 cut(s) 202, 309
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 796
PshBI ATTAAT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 796
PspN4I GGNNCC 4 cut(s) 688, 797, 798, 1064
PspPI GGNCC 2 cut(s) 686, 796
PspPPI RGGWCCY 1 cut(s) 796
PsuI RGATCY 1 cut(s) 587
PvuII CAGCTG 2 cut(s) 617, 1004
RsaI GTAC 4 cut(s) 114, 221, 571, 1064
RsaNI GTAC 4 cut(s) 113, 220, 570, 1063
RseI CAYNNNNRTG 2 cut(s) 525, 1101
SaqAI TTAA 5 cut(s) 6, 285, 326, 411, 681
SatI GCNGC 2 cut(s) 201, 308
Sau3AI GATC 4 cut(s) 49, 232, 587, 1293
Sau96I GGNCC 2 cut(s) 686, 796
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 1 cut(s) 653
SduI GDGCHC 2 cut(s) 190, 760
SfaNI GCATC 3 cut(s) 294, 445, 520
SfuI TTCGAA 2 cut(s) 139, 549
SinI GGWCC 2 cut(s) 686, 796
SmiMI CAYNNNNRTG 2 cut(s) 525, 1101
Sse9I AATT 6 cut(s) 25, 31, 54, 412, 487, 764
SsiI CCGC 2 cut(s) 308, 354
SspMI CTAG 2 cut(s) 402, 1332
StyI CCWWGG 2 cut(s) 520, 1305
TaaI ACNGT 2 cut(s) 224, 1241
TaiI ACGT 1 cut(s) 1280
TaqI TCGA 4 cut(s) 48, 139, 152, 549
TasI AATT 6 cut(s) 25, 31, 54, 412, 487, 764
TatI WGTACW 3 cut(s) 112, 219, 569
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 5 cut(s) 16, 333, 389, 1087, 1311
Tru1I TTAA 5 cut(s) 6, 285, 326, 411, 681
Tru9I TTAA 5 cut(s) 6, 285, 326, 411, 681
TscAI CASTG 5 cut(s) 103, 229, 250, 507, 942
TseFI GTSAC 1 cut(s) 996
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 3 cut(s) 32, 325, 884
TspGWI ACGGA 2 cut(s) 496, 707
TspRI CASTG 5 cut(s) 103, 229, 250, 507, 942
VpaK11BI GGWCC 2 cut(s) 686, 796
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 3 cut(s) 25, 31, 487
XceI RCATGY 2 cut(s) 84, 1141
XspI CTAG 2 cut(s) 402, 1332
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.