Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Reverse (-)

5152131 .. 5152570

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATTCCGAAGACAAAAGAGGAATTATTCTCATACGAAATAAATTGGGCTATTTATGAACAGCATGCACTACATGAACGCATGAGACCATGGATTTCGAAGAAGATTACGGAGTTTCTGGGAGAGGAAGAGACTACGCTGGTAGATTACATTGTATCTAGTACTCAGGAACATGTCGGAGCAGAACGCATGCTCCAGCTGCTTCAATCCATTTTAGACGAAGAAGCTGAAATGTTTGTGCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTCGAGACAGGTCTGGCTTCAAGAACAAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

105

Amino Acids

12.42

Weight (kDa)

5.22

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWI	PF01480	27 - 90	2.9e-15	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	206, 269, 300
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	199, 227
AluI	AGCT	2 cut(s)	199, 227
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	79, 125, 278
ApeKI	GCWGC	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	79, 125, 278
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	163
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	79, 125, 278
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	66, 191
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	261
BstMAI	GTCTC	3 cut(s)	79, 125, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	3 cut(s)	68, 176, 193
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	66, 191
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	6 cut(s)	65, 74, 82, 90, 173, 190
CviJI	RGCY	4 cut(s)	50, 199, 227, 296
CviKI_1	RGCY	4 cut(s)	50, 199, 227, 296
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
FaiI	YATR	8 cut(s)	34, 57, 66, 75, 83, 91, 174, 191
FatI	CATG	6 cut(s)	64, 73, 81, 89, 172, 189
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	179
Hin1II	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	9, 179
Hpy188III	TCNNGA	4 cut(s)	167, 244, 283, 300
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
LmnI	GCTCC	2 cut(s)	179, 198
LpnPI	CCDG	6 cut(s)	104, 125, 152, 209, 273, 278
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	159
MboII	GAAGA	5 cut(s)	22, 112, 115, 140, 233
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	3 cut(s)	23, 43, 270
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	13, 118, 246
MseI	TTAA	2 cut(s)	273, 313
MspA1I	CMGCKG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	89
NlaIII	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
NspI	RCATGY	3 cut(s)	68, 176, 193
NspV	TTCGAA	1 cut(s)	98
PaeI	GCATGC	2 cut(s)	68, 193
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	201
PscI	ACATGT	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	273, 313
SatI	GCNGC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	4 cut(s)	201, 229, 282, 292
SfaNI	GCATC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SphI	GCATGC	2 cut(s)	68, 193
Sse9I	AATT	3 cut(s)	23, 43, 270
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	98, 282
TasI	AATT	3 cut(s)	23, 43, 270
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	273, 313
Tru9I	TTAA	2 cut(s)	273, 313
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	72, 90
TspGWI	ACGGA	1 cut(s)	125
XceI	RCATGY	3 cut(s)	68, 176, 193
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.