pycom16g08550

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004922
Physical Location & Seq
Reverse (-)
5672559 .. 5674476
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
ATGTGGTGGATGATGGCTGAGGGAGGGGGCCATTACTGCTCTAAGAAGACTGATGATATCTGCGGCAATGTTTGCGGCCAGGAATCAGGCAGAATGTTGAGCATGTCAAGAGTTCGCTGCATTCTACGTGGATTTGACTTCAAAGTTCTCCTCATTCTGTTTACACTTATTCCGATGTGTGTCTTTGGCATTTACGTGCATGGACAGAAGATCTCATACTTCTTGCGGCCGCTATGGGAATCGCCACCTAAACCTTTCCATGACATTCCACACTATTATCACGAGAATGTGTCCATGGAGAACCTCTGCAAGCTTCATGGTTGGGGGATCCGTGAGTACCCTAGGCGTGTTTTTGATGCCGTGTTGTTCAGTAATGAGATGGACATCCTTACCATAAGATGGAAAGAGTTGTATCCCTACGTAACGCAGTTTGTTCTCCTTGAATCAAATTCAACATTTACTGGATTTCCAAAGCCTCTGTTCTTCTCCCGTTATCGCGAGCAGTTCAAGTTTGTGGAGCCCCGATTAACTTATGGGACTGTTGGAGGAAGATTCAAGAGAGGGGAAAATCCATTTGTTGAGGAGGCATATCAACGAGTAGCACTGGACCAGCTTCTCAATATAGCTGGTATTACTGAGGACGACTTGTTGATAATGTCTGACGTTGATGAGATCGATCCAAGCAGACACACCATCAATCTTCTGAGGTGGTGTGACGAAGTTCCTCAAATCTTGCATCTTCAGTTGAAGAACTATCTCTATTCCTTTGAGTTTCTGGTGGACAATAACAGTTGGAGAGCTTCAGTACACAGGTACCGGGAAGGGGAGACGAGATATGCACACTATCGCCAGACAGATGACATCTTAGCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCTATATCAGTGAGTTCATCTTTAAGATGAAAGCATACAGCCATTACGATAGAGTCAGGTTTTCAAAGTATCTAAACCCAGAAAGAGTTCAGAAAGTGATCTCCAAGGGGTCTGATTTATTTGATATGCTTCCTGAAGAGTACACCTTCAAGGAAATCATCGGGAAAATGGGACCTATTCCTCATTCCTTCTCTGGTGTCCATCTTCCATCCTTTCTGTTGGAGAATGCAGAGAAGTACAAATTTCTTTTGCCTGGGAATTGCAGAAGAGAGAGTGGCTGA

Protein Analysis

394

Amino Acids

46.44

Weight (kDa)

7.21

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 45 - 391 7.2e-183 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 813
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 498
AciI CCGC 5 cut(s) 63, 75, 226, 230, 901
AclWI GGATC 3 cut(s) 322, 335, 671
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 2 cut(s) 448, 1142
AcuI CTGAAG 3 cut(s) 725, 786, 1056
AfaI GTAC 5 cut(s) 338, 807, 815, 1043, 1139
AfiI CCNNNNNNNGG 2 cut(s) 399, 823
AgsI TTSAA 8 cut(s) 142, 443, 453, 508, 556, 748, 966, 1051
AjnI CCWGG 2 cut(s) 78, 1153
AluBI AGCT 5 cut(s) 313, 613, 626, 800, 891
AluI AGCT 5 cut(s) 313, 613, 626, 800, 891
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 3 cut(s) 322, 335, 671
AoxI GGCC 3 cut(s) 28, 76, 227
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 448, 1142
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 813
AspA2I CCTAGG 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 28, 607, 1073
AsuC2I CCSGG 1 cut(s) 818
AvaII GGWCC 2 cut(s) 607, 1073
AvrII CCTAGG 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 797, 830
BamHI GGATCC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 104
BccI CCATC 6 cut(s) 7, 373, 393, 701, 1110, 1117
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 80, 1155
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 818
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 423
BglII AGATCT 1 cut(s) 210
BisI GCNGC 5 cut(s) 64, 76, 118, 227, 230
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 5 cut(s) 65, 77, 119, 228, 231
Bme1390I CCNGG 3 cut(s) 80, 818, 1155
Bme18I GGWCC 2 cut(s) 607, 1073
BmgT120I GGNCC 3 cut(s) 28, 607, 1073
BmiI GGNNCC 5 cut(s) 29, 329, 519, 815, 1074
BmrFI CCNGG 3 cut(s) 80, 818, 1155
BmsI GCATC 3 cut(s) 346, 745, 862
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 818
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 3 cut(s) 128, 196, 421
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 294, 341, 1005, 1154
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 823
Bse1I ACTGG 2 cut(s) 466, 609
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 80, 1155
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 294, 341, 1005, 1154
BseGI GGATG 3 cut(s) 15, 384, 1109
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 399, 823
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 9, 627, 695
BseNI ACTGG 2 cut(s) 466, 609
BseRI GAGGAG 2 cut(s) 140, 596
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 3 cut(s) 30, 78, 229
BshNI GGYRCC 1 cut(s) 813
BshVI ATCGAT 1 cut(s) 675
BsiEI CGRYCG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 817
BslFI GGGAC 2 cut(s) 550, 1086
BslI CCNNNNNNNGG 2 cut(s) 399, 823
BsmAI GTCTC 1 cut(s) 821
BsmBI CGTCTC 1 cut(s) 821
BsmFI GGGAC 2 cut(s) 550, 1086
BsmI GAATGC 2 cut(s) 120, 1132
BsnI GGCC 3 cut(s) 30, 78, 229
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 5 cut(s) 210, 327, 672, 676, 999
Bsp19I CCATGG 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 5 cut(s) 63, 75, 226, 230, 901
BspANI GGCC 3 cut(s) 30, 78, 229
BspCNI CTCAG 3 cut(s) 10, 628, 696
BspDI ATCGAT 1 cut(s) 675
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 5 cut(s) 29, 329, 519, 815, 1074
BspPI GGATC 3 cut(s) 322, 335, 671
BspT107I GGYRCC 1 cut(s) 813
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 466, 609
BssECI CCNNGG 4 cut(s) 294, 341, 1005, 1154
BssMI GATC 5 cut(s) 210, 327, 672, 676, 999
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 3 cut(s) 294, 341, 1005
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 80, 1155
Bst4CI ACNGT 2 cut(s) 541, 791
Bst6I CTCTTC 2 cut(s) 1032, 1162
BstAPI GCANNNNNTGC 1 cut(s) 72
BstBAI YACGTR 3 cut(s) 128, 196, 421
BstC8I GCNNGC 2 cut(s) 311, 500
BstDEI CTNAG 5 cut(s) 18, 42, 636, 704, 865
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 15, 384, 1109
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 5 cut(s) 213, 330, 675, 679, 1002
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 5 cut(s) 210, 327, 672, 676, 999
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 2 cut(s) 36, 72
BstNI CCWGG 2 cut(s) 80, 1155
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 78, 816, 1153
BstSNI TACGTA 1 cut(s) 421
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 210, 327
BstYI RGATCY 2 cut(s) 210, 327
BstZI CGGCCG 1 cut(s) 227
Bsu15I ATCGAT 1 cut(s) 675
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 3 cut(s) 30, 78, 229
BsuTUI ATCGAT 1 cut(s) 675
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 15, 384, 1109
BtsIMutI CAGTG 2 cut(s) 602, 916
BtuMI TCGCGA 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 311, 500
CciNI GCGGCCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 28, 607, 1073
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 5 cut(s) 337, 806, 814, 1042, 1138
CviAII CATG 5 cut(s) 103, 200, 260, 295, 317
CviQI GTAC 5 cut(s) 337, 806, 814, 1042, 1138
DdeI CTNAG 5 cut(s) 18, 42, 636, 704, 865
DpnI GATC 5 cut(s) 212, 329, 674, 678, 1001
DpnII GATC 5 cut(s) 210, 327, 672, 676, 999
EaeI YGGCCR 2 cut(s) 76, 227
EagI CGGCCG 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 1032, 1162
EarI CTCTTC 2 cut(s) 1032, 1162
EclXI CGGCCG 1 cut(s) 227
Eco105I TACGTA 1 cut(s) 421
Eco130I CCWWGG 3 cut(s) 294, 341, 1005
Eco24I GRGCYC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 607, 1073
Eco52I CGGCCG 1 cut(s) 227
Eco57I CTGAAG 3 cut(s) 725, 786, 1056
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRII CCWGG 2 cut(s) 78, 1153
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 3 cut(s) 294, 341, 1005
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 3 cut(s) 294, 341, 1005
Esp3I CGTCTC 1 cut(s) 821
FaeI CATG 5 cut(s) 106, 203, 263, 298, 320
FaqI GGGAC 2 cut(s) 550, 1086
FatI CATG 5 cut(s) 102, 199, 259, 294, 316
Fnu4HI GCNGC 5 cut(s) 64, 76, 118, 227, 230
FokI GGATG 3 cut(s) 22, 371, 1096
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 5 cut(s) 64, 76, 118, 227, 230
FspBI CTAG 1 cut(s) 342
GluI GCNGC 5 cut(s) 64, 76, 118, 227, 230
HaeIII GGCC 3 cut(s) 30, 78, 229
HapII CCGG 1 cut(s) 817
Hin1II CATG 5 cut(s) 106, 203, 263, 298, 320
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 5 cut(s) 83, 239, 443, 552, 954
HpaII CCGG 1 cut(s) 817
Hpy166II GTNNAC 4 cut(s) 162, 781, 808, 1044
Hpy188I TCNGA 5 cut(s) 174, 661, 705, 993, 1015
Hpy188III TCNNGA 6 cut(s) 108, 281, 497, 556, 1034, 1063
Hpy8I GTNNAC 4 cut(s) 162, 781, 808, 1044
HpyAV CCTTC 3 cut(s) 815, 1057, 1099
HpyCH4III ACNGT 2 cut(s) 541, 791
HpyCH4IV ACGT 4 cut(s) 127, 195, 420, 663
HpyCH4V TGCA 8 cut(s) 120, 199, 309, 736, 839, 875, 1130, 1164
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 72
HpyF3I CTNAG 5 cut(s) 18, 42, 636, 704, 865
HpySE526I ACGT 4 cut(s) 127, 195, 420, 663
Hsp92II CATG 5 cut(s) 106, 203, 263, 298, 320
KpnI GGTACC 1 cut(s) 817
Kzo9I GATC 5 cut(s) 210, 327, 672, 676, 999
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 3 cut(s) 346, 745, 862
MaeI CTAG 1 cut(s) 342
MaeII ACGT 4 cut(s) 127, 195, 420, 663
MaeIII GTNAC 2 cut(s) 421, 713
MalI GATC 5 cut(s) 212, 329, 674, 678, 1001
MboI GATC 5 cut(s) 210, 327, 672, 676, 999
MflI RGATCY 2 cut(s) 210, 327
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 3 cut(s) 448, 1142, 1159
MlyI GAGTC 1 cut(s) 963
MmeI TCCRAC 3 cut(s) 523, 773, 1101
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 2 cut(s) 527, 924
MslI CAYNNNNRTG 2 cut(s) 194, 285
MspI CCGG 1 cut(s) 817
MspR9I CCNGG 3 cut(s) 80, 818, 1155
Mva1269I GAATGC 2 cut(s) 120, 1132
MvaI CCWGG 2 cut(s) 80, 1155
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 36, 72
NciI CCSGG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 294
NdeII GATC 5 cut(s) 210, 327, 672, 676, 999
NlaIII CATG 5 cut(s) 106, 203, 263, 298, 320
NlaIV GGNNCC 5 cut(s) 29, 329, 519, 815, 1074
NmuCI GTSAC 1 cut(s) 713
NotI GCGGCCGC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 498
NspI RCATGY 1 cut(s) 106
PctI GAATGC 2 cut(s) 120, 1132
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 4 cut(s) 83, 239, 443, 552
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 5 cut(s) 65, 77, 119, 228, 231
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
Ppu21I YACGTR 3 cut(s) 128, 196, 421
PpuMI RGGWCCY 1 cut(s) 1073
Psp5II RGGWCCY 1 cut(s) 1073
Psp6I CCWGG 2 cut(s) 78, 1153
PspGI CCWGG 2 cut(s) 78, 1153
PspN4I GGNNCC 5 cut(s) 29, 329, 519, 815, 1074
PspPI GGNCC 3 cut(s) 28, 607, 1073
PspPPI RGGWCCY 1 cut(s) 1073
PsuI RGATCY 2 cut(s) 210, 327
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 5 cut(s) 338, 807, 815, 1043, 1139
RsaNI GTAC 5 cut(s) 337, 806, 814, 1042, 1138
RseI CAYNNNNRTG 2 cut(s) 194, 285
SaqAI TTAA 2 cut(s) 527, 924
SatI GCNGC 5 cut(s) 64, 76, 118, 227, 230
Sau3AI GATC 5 cut(s) 210, 327, 672, 676, 999
Sau96I GGNCC 3 cut(s) 28, 607, 1073
SchI GAGTC 1 cut(s) 963
ScrFI CCNGG 3 cut(s) 80, 818, 1155
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 3 cut(s) 346, 745, 862
SinI GGWCC 2 cut(s) 607, 1073
SmiMI CAYNNNNRTG 2 cut(s) 194, 285
SnaBI TACGTA 1 cut(s) 421
Sse9I AATT 3 cut(s) 448, 1142, 1159
SsiI CCGC 5 cut(s) 63, 75, 226, 230, 901
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 78, 816, 1153
StyI CCWWGG 3 cut(s) 294, 341, 1005
TaaI ACNGT 2 cut(s) 541, 791
TaiI ACGT 4 cut(s) 130, 198, 423, 666
TaqI TCGA 1 cut(s) 675
TasI AATT 3 cut(s) 448, 1142, 1159
TatI WGTACW 3 cut(s) 805, 1041, 1137
TauI GCSGC 4 cut(s) 66, 78, 229, 232
TfiI GAWTC 4 cut(s) 83, 239, 443, 552
Tru1I TTAA 2 cut(s) 527, 924
Tru9I TTAA 2 cut(s) 527, 924
TscAI CASTG 2 cut(s) 609, 916
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 3 cut(s) 305, 907, 944
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 609, 916
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 607, 1073
XapI RAATTY 2 cut(s) 448, 1142
XceI RCATGY 1 cut(s) 106
XmaJI CCTAGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.