Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6192267 .. 6194038

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATAGTAGCTTCTCTTCTCCCCGGAACGATTCGTTTCCGGCTGGGCTCCGGGTCCTCGTCGTCGACGACGATCCCACTTGGCTTAAGATCTTAGAAAAGATGCTCAAGAAGTGCTCATACGAAGTGACTACATGTGGTTTGGCAAGAGAAGCTTTATGCTTGCTTCGTGAAAAGAAAAATGGATATGACATTGTAATCAGTGATGTCAACATGCCCGACATGGATGGTTTTAAACTTCTCGAGCATGTAGGACTTGAGATGGATCTTCCAGTTATTATGATGTCTGTTGATGGAGAAACGAGTAGGGTTATGAAAGGAGTTCAACATGGAGCGTGTGATTATCTTCTGAAGCCGATAAGAATGAAAGAACTACGTAATATATGGCAGCATGTCTTTAGAAAGAAGATACATGAGATAAAAGACATTGAGAGTCATGAAAGCGTCGAAGGTATTCAGCTTATAAGAAGTGGATCGATCAGTATGATGAGGGATACTTTCTTGGCGCAGATGACCTCACTTCATCGAGAAAAAGAAAGGATGTCGATAACAAATACGATGACAAAGACTTTGCTGATTGTTCGTCGGCAAAAAAAGCTAGAGTTGTTTGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

206

Amino Acids

23.62

Weight (kDa)

8.31

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	19 - 128	1.7e-25	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	3 cut(s)	68, 273, 481
AcuI	CTGAAG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	4 cut(s)	12, 155, 460, 598
AluI	AGCT	4 cut(s)	12, 155, 460, 598
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	68, 273, 481
Ama87I	CYCGRG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	25, 53
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	3 cut(s)	33, 104, 136
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	221, 256, 287
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	25, 53
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	614
BfrI	CTTAAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	25, 53
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	50, 56
BmrFI	CCNGG	2 cut(s)	25, 53
BmsI	GCATC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	92, 278
BpuMI	CCSGG	2 cut(s)	25, 53
Bsa29I	ATCGAT	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	232, 546
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	25, 41, 52
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	51, 119
Bsp143I	GATC	5 cut(s)	73, 90, 265, 473, 477
BspDI	ATCGAT	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	50, 56
BspPI	GGATC	3 cut(s)	68, 273, 481
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	5 cut(s)	73, 90, 265, 473, 477
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	232, 546
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	5 cut(s)	76, 93, 268, 476, 480
BstMBI	GATC	5 cut(s)	73, 90, 265, 473, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 595
BstNSI	RCATGY	4 cut(s)	138, 217, 251, 395
BstSCI	CCNGG	2 cut(s)	23, 51
BstSFI	CTRYAG	1 cut(s)	614
BstSNI	TACGTA	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	90, 265
BstYI	RGATCY	2 cut(s)	90, 265
Bsu15I	ATCGAT	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	487
BsuTUI	ATCGAT	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	232, 546
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	476
CseI	GACGC	1 cut(s)	433
CviAII	CATG	8 cut(s)	135, 214, 223, 248, 329, 392, 413, 437
CviJI	RGCY	8 cut(s)	12, 44, 49, 85, 155, 355, 460, 598
CviKI_1	RGCY	8 cut(s)	12, 44, 49, 85, 155, 355, 460, 598
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	5 cut(s)	75, 92, 267, 475, 479
DpnII	GATC	5 cut(s)	73, 90, 265, 473, 477
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	8 cut(s)	134, 213, 222, 247, 328, 391, 412, 436
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	2 cut(s)	239, 553
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	389
GsaI	CCCAGC	1 cut(s)	48
HapII	CCGG	3 cut(s)	25, 41, 52
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	2 cut(s)	67, 211
HindII	GTYRAC	2 cut(s)	67, 211
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	32, 433
HpaII	CCGG	3 cut(s)	25, 41, 52
Hpy166II	GTNNAC	2 cut(s)	67, 211
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	5 cut(s)	109, 170, 242, 437, 527
Hpy8I	GTNNAC	2 cut(s)	67, 211
Hpy99I	CGWCG	6 cut(s)	65, 68, 71, 74, 449, 588
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 595
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	5 cut(s)	73, 90, 265, 473, 477
LmnI	GCTCC	2 cut(s)	54, 332
LpnPI	CCDG	5 cut(s)	30, 38, 54, 65, 285
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	75, 92, 267, 475, 479
MboI	GATC	5 cut(s)	73, 90, 265, 473, 477
MboII	GAAGA	4 cut(s)	9, 260, 338, 418
MflI	RGATCY	2 cut(s)	90, 265
MhlI	GDGCHC	2 cut(s)	51, 119
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	3 cut(s)	68, 483, 526
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	87, 234
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	3 cut(s)	25, 41, 52
MspR9I	CCNGG	2 cut(s)	25, 53
MwoI	GCNNNNNNNGC	2 cut(s)	152, 595
NciI	CCSGG	2 cut(s)	25, 53
NdeII	GATC	5 cut(s)	73, 90, 265, 473, 477
NlaIII	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
NlaIV	GGNNCC	2 cut(s)	50, 56
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	4 cut(s)	138, 217, 251, 395
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 69
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	50, 56
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	90, 265
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	87, 234
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	5 cut(s)	73, 90, 265, 473, 477
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	25, 53
SduI	GDGCHC	2 cut(s)	51, 119
SetI	ASST	7 cut(s)	14, 157, 379, 454, 462, 518, 600
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	614
Sfr274I	CTCGAG	1 cut(s)	242
SgrDI	CGTCGACG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	4 cut(s)	86, 107, 242, 257
SmoI	CTYRAG	4 cut(s)	86, 107, 242, 257
SnaBI	TACGTA	1 cut(s)	377
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	23, 51
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	6 cut(s)	66, 243, 447, 476, 526, 545
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	87, 234
Tru9I	TTAA	2 cut(s)	87, 234
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	329, 380, 453, 512
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	4 cut(s)	138, 217, 251, 395
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.