Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004455

Physical Location & Seq

Genomic Coordinates Reverse (-)

10024670 .. 10026484

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14000.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTCTGATGTAAACGGAAATCTTGCTACTGCTGCTGTAAACATATATGTTCTCACTATCCCGCCCCAATTTGTTTCTTTTCCAAGCGAACTACAAGCAACTGAAGACGAGATTAGTCCCAGATTCGGTGGTTTCCTCGGGTTTGAGATAAGGTATTCGGATGCGATGGAGAACATCTCTGTGAATCTCACTGCGCAATCTGGGACAGTCTTTCTGTCTCCTATGGTAGTGCAATTCTGGGAGCCAGTTTGGACAGGACTTTCTGTATACGCATCAGATGGAGATGCAAAGGGTTTGATTTTAGTAGGCTGTGTGGAAGTAATCAATTTTGCCCTTCAGTCAATTCAATACTTCGGGGACGAGAACTTTTGTGGCTATGATACAATTCGAGTGTCGACGAGGAACAGGAATGGAGTAAATAAATTGGATGTTCCAGTTTTTGTGGAACCTATTAACGATCCTCCATTTATTCATGCTCCTGAATACATTATTTTGAAAAGTAATGAAGACAAGTCACCGATATACGACAGAGAAAAAGACAAGTTTGAGTTCTGCATTGGCGATCCAGATCTTCTTGCGTTCCCTGGTAACGAGTCCCTTTTCAGAGTCACCTTTTCCGTGGAAGTTAATGATGGATATTTGGCAACCAGCCTACCAGCTGAGCTCATCTCTACAACCGAACTGAAGCTCAAGAATAGTTATCAGTGGCTACCTCTTCAGACATATGTCAGCATCTCAAAACATTTCATGGTGAGAGCTAAGGGAGTTAGATTTCAAGGAACATTTAATGACTGCAACGCTGTGATGCGACAGCTCTTTTATCATGGCGGAGAACAGGATGCAATCTTGACAGTGAAATTGAATGACATGGGAAACTACGGATGCTATTTTAATTGTGATGATAAGATATCGGTGCCTTTACAGGCTGAGGCTTCTGTTAATCTAATAAGGCGAAGGCCAATGAGTTCGCTTGTGGCTCACGGCTTGGGGTCAGCTATTGTCATCGAATCCACTATAGTGTTTTTGCTCGGAGCAGTGCTACTATTTTTCACATGCAAATGTGCAGCTCACCTTGTACATGAAAGAAGAAACAAAGCCACCAGGGCACCAGAGCAGGCAAGCGCACCTAGTTTGCACAAAGGAATGTTGAGGACAAATCTACCAGCAAATGCAGACACCGGTGTTTGTTCAAGCCCTTTGCTTGGCAGCCAACATCCCAACTTTCGCCAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin

Protein Analysis

412

Amino Acids

45.55

Weight (kDa)

5.45

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150
fragaria_vesca	FvH4_4g18570
prunus_persica	Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1
pyrus_communis	pycom16g14000 pycom16g14010
rosa_chinensis	RchiOBHm_Chr4g0423171
rosa_laevigata	RLG00000007579
rosa_multiflora	Rmu_sc0000744.1_g000001 Rmu_sc0008829.1_g000002 Rmu_sc0020601.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365330
rosa_rugosa	Rorug04G0184800 Rorug04G0184900
rosa_samantha	Rh4AG244300 Rh4AG244400 Rh4BG249500 Rh4BG249600 Rh4CG258600 Rh4CG258700 Rh4DG244300 Rh4DG244400
rosa_wichuraiana	Rw4G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
AccB1I	GGYRCC	2 cut(s)	913, 1105
AccI	GTMKAC	2 cut(s)	267, 395
AciI	CCGC	2 cut(s)	62, 828
AclWI	GGATC	2 cut(s)	452, 557
AcuI	CTGAAG	4 cut(s)	123, 320, 701, 704
AfaI	GTAC	1 cut(s)	1077
AfiI	CCNNNNNNNGG	2 cut(s)	125, 1202
AgeI	ACCGGT	1 cut(s)	1178
AgsI	TTSAA	5 cut(s)	347, 496, 776, 862, 1191
AjnI	CCWGG	2 cut(s)	583, 1100
AleI	CACNNNNGTG	1 cut(s)	1016
AluBI	AGCT	7 cut(s)	659, 664, 688, 758, 814, 995, 1067
AluI	AGCT	7 cut(s)	659, 664, 688, 758, 814, 995, 1067
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	452, 557
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	3 cut(s)	32, 1064, 1206
AsiGI	ACCGGT	1 cut(s)	1178
AspLEI	GCGC	2 cut(s)	196, 1124
AsuHPI	GGTGA	4 cut(s)	507, 601, 763, 1061
AvaI	CYCGRG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	1108
BanI	GGYRCC	2 cut(s)	913, 1105
BanII	GRGCYC	1 cut(s)	666
BbsI	GAAGAC	2 cut(s)	111, 513
Bbv12I	GWGCWC	1 cut(s)	666
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	3 cut(s)	19, 1076, 1218
BccI	CCATC	3 cut(s)	160, 272, 626
BceAI	ACGGC	1 cut(s)	997
BciT130I	CCWGG	2 cut(s)	585, 1102
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	1128
BfmI	CTRYAG	1 cut(s)	1014
BglI	GCCNNNNNGGC	1 cut(s)	1103
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	33, 1065, 1207
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	3 cut(s)	34, 1066, 1208
Bme1390I	CCNGG	2 cut(s)	585, 1102
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	4 cut(s)	243, 447, 915, 1107
BmrFI	CCNGG	2 cut(s)	585, 1102
BmsI	GCATC	7 cut(s)	151, 274, 281, 741, 795, 829, 872
BoxI	GACNNNNGTC	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	111, 513
BplI	GAGNNNNNCTC	4 cut(s)	161, 193, 653, 685
Bpu10I	CCTNAGC	2 cut(s)	759, 927
Bpu1102I	GCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	136, 583, 618, 1101
BsaWI	WCCGGW	1 cut(s)	1178
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 1202
Bse118I	RCCGGY	1 cut(s)	1178
Bse1I	ACTGG	2 cut(s)	245, 434
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	585, 1102
BseDI	CCNNGG	4 cut(s)	136, 583, 618, 1101
BseGI	GGATG	5 cut(s)	166, 433, 844, 887, 1213
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	125, 1202
BseMII	CTCAG	2 cut(s)	651, 918
BseNI	ACTGG	2 cut(s)	245, 434
BseSI	GKGCMC	1 cut(s)	1108
BseXI	GCAGC	3 cut(s)	19, 1076, 1218
BsgI	GTGCAG	1 cut(s)	1083
BshFI	GGCC	1 cut(s)	958
BshNI	GGYRCC	2 cut(s)	913, 1105
BshTI	ACCGGT	1 cut(s)	1178
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	1179
BslFI	GGGAC	4 cut(s)	102, 217, 371, 580
BslI	CCNNNNNNNGG	2 cut(s)	125, 1202
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	4 cut(s)	102, 217, 371, 580
BsnI	GGCC	1 cut(s)	958
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	666, 1108
Bsp1407I	TGTACA	1 cut(s)	1075
Bsp143I	GATC	3 cut(s)	457, 562, 568
Bsp1720I	GCTNAGC	1 cut(s)	660
BspACI	CCGC	2 cut(s)	62, 828
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	2 cut(s)	652, 919
BspLI	GGNNCC	4 cut(s)	243, 447, 915, 1107
BspPI	GGATC	2 cut(s)	452, 557
BspT107I	GGYRCC	2 cut(s)	913, 1105
BsrFI	RCCGGY	1 cut(s)	1178
BsrGI	TGTACA	1 cut(s)	1075
BsrI	ACTGG	2 cut(s)	245, 434
BssAI	RCCGGY	1 cut(s)	1178
BssECI	CCNNGG	4 cut(s)	136, 583, 618, 1101
BssMI	GATC	3 cut(s)	457, 562, 568
BssNAI	GTATAC	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	585, 1102
Bst4CI	ACNGT	3 cut(s)	208, 853, 1233
Bst6I	CTCTTC	1 cut(s)	720
BstAUI	TGTACA	1 cut(s)	1075
BstC8I	GCNNGC	2 cut(s)	1116, 1120
BstDEI	CTNAG	3 cut(s)	660, 759, 927
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	5 cut(s)	166, 433, 844, 887, 1213
BstHHI	GCGC	2 cut(s)	196, 1124
BstKTI	GATC	3 cut(s)	460, 565, 571
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	3 cut(s)	457, 562, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 1103
BstNI	CCWGG	2 cut(s)	585, 1102
BstNSI	RCATGY	1 cut(s)	1056
BstPAI	GACNNNNGTC	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	583, 1100
BstSFI	CTRYAG	1 cut(s)	1014
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	3 cut(s)	19, 1076, 1218
BstV2I	GAAGAC	2 cut(s)	111, 513
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BstZ17I	GTATAC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	958
BtgI	CCRYGG	1 cut(s)	618
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	5 cut(s)	166, 433, 844, 887, 1213
BtsI	GCAGTG	2 cut(s)	189, 1041
BtsIMutI	CAGTG	4 cut(s)	189, 710, 858, 1041
Cac8I	GCNNGC	2 cut(s)	1116, 1120
CfoI	GCGC	2 cut(s)	196, 1124
Cfr10I	RCCGGY	1 cut(s)	1178
Csp6I	GTAC	1 cut(s)	1076
CspAI	ACCGGT	1 cut(s)	1178
CviAII	CATG	6 cut(s)	473, 748, 824, 868, 1053, 1079
CviQI	GTAC	1 cut(s)	1076
DdeI	CTNAG	3 cut(s)	660, 759, 927
DpnI	GATC	3 cut(s)	459, 564, 570
DpnII	GATC	3 cut(s)	457, 562, 568
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	843
Ecl136II	GAGCTC	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	909
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	4 cut(s)	123, 320, 701, 704
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	583, 1100
EcoRV	GATATC	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	666
FaeI	CATG	6 cut(s)	476, 751, 827, 871, 1056, 1082
FaqI	GGGAC	4 cut(s)	102, 217, 371, 580
FatI	CATG	6 cut(s)	472, 747, 823, 867, 1052, 1078
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	2 cut(s)	267, 395
Fnu4HI	GCNGC	3 cut(s)	33, 1065, 1207
FokI	GGATG	5 cut(s)	173, 440, 851, 894, 1200
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	3 cut(s)	33, 1065, 1207
FspBI	CTAG	1 cut(s)	1128
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	195, 1123
GluI	GCNGC	3 cut(s)	33, 1065, 1207
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	1 cut(s)	1179
HhaI	GCGC	2 cut(s)	196, 1124
Hin1II	CATG	6 cut(s)	476, 751, 827, 871, 1056, 1082
Hin6I	GCGC	2 cut(s)	194, 1122
HinP1I	GCGC	2 cut(s)	194, 1122
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	5 cut(s)	123, 184, 593, 606, 1007
HpaII	CCGG	1 cut(s)	1179
HphI	GGTGA	4 cut(s)	507, 601, 763, 1061
Hpy166II	GTNNAC	4 cut(s)	13, 40, 268, 396
Hpy188I	TCNGA	6 cut(s)	7, 160, 277, 605, 720, 1031
Hpy188III	TCNNGA	4 cut(s)	479, 566, 691, 847
Hpy8I	GTNNAC	4 cut(s)	13, 40, 268, 396
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	2 cut(s)	344, 948
HpyCH4III	ACNGT	3 cut(s)	208, 853, 1233
HpyCH4V	TGCA	9 cut(s)	232, 287, 555, 795, 842, 1056, 1064, 1135, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 1103
HpyF3I	CTNAG	3 cut(s)	660, 759, 927
Hsp92II	CATG	6 cut(s)	476, 751, 827, 871, 1056, 1082
HspAI	GCGC	2 cut(s)	194, 1122
Kzo9I	GATC	3 cut(s)	457, 562, 568
LmnI	GCTCC	3 cut(s)	241, 481, 1031
Lsp1109I	GCAGC	3 cut(s)	19, 1076, 1218
LweI	GCATC	7 cut(s)	151, 274, 281, 741, 795, 829, 872
MaeI	CTAG	1 cut(s)	1128
MaeIII	GTNAC	3 cut(s)	513, 587, 607
MalI	GATC	3 cut(s)	459, 564, 570
MboI	GATC	3 cut(s)	457, 562, 568
MboII	GAAGA	5 cut(s)	116, 518, 563, 707, 1098
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	666, 1108
MluCI	AATT	8 cut(s)	68, 233, 325, 342, 384, 422, 857, 892
MlyI	GAGTC	2 cut(s)	602, 615
MnlI	CCTC	6 cut(s)	146, 393, 471, 723, 922, 1143
MseI	TTAA	5 cut(s)	453, 627, 786, 891, 939
MslI	CAYNNNNRTG	3 cut(s)	179, 1016, 1057
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	1179
MspR9I	CCNGG	2 cut(s)	585, 1102
MvaI	CCWGG	2 cut(s)	585, 1102
MwoI	GCNNNNNNNGC	2 cut(s)	32, 1103
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	3 cut(s)	457, 562, 568
NlaIII	CATG	6 cut(s)	476, 751, 827, 871, 1056, 1082
NlaIV	GGNNCC	4 cut(s)	243, 447, 915, 1107
NmuCI	GTSAC	2 cut(s)	513, 607
NsbI	TGCGCA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	1056
OliI	CACNNNNGTG	1 cut(s)	1016
PfeI	GAWTC	3 cut(s)	123, 184, 1007
PinAI	ACCGGT	1 cut(s)	1178
PkrI	GCNGC	3 cut(s)	34, 1066, 1208
PleI	GAGTC	2 cut(s)	601, 614
PpsI	GAGTC	2 cut(s)	601, 614
PshAI	GACNNNNGTC	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	583, 1100
PspGI	CCWGG	2 cut(s)	583, 1100
PspN4I	GGNNCC	4 cut(s)	243, 447, 915, 1107
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	1077
RsaNI	GTAC	1 cut(s)	1076
RseI	CAYNNNNRTG	3 cut(s)	179, 1016, 1057
SacI	GAGCTC	1 cut(s)	666
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	5 cut(s)	453, 627, 786, 891, 939
SatI	GCNGC	3 cut(s)	33, 1065, 1207
Sau3AI	GATC	3 cut(s)	457, 562, 568
SchI	GAGTC	2 cut(s)	602, 615
ScrFI	CCNGG	2 cut(s)	585, 1102
SduI	GDGCHC	2 cut(s)	666, 1108
SfaNI	GCATC	7 cut(s)	151, 274, 281, 741, 795, 829, 872
SfcI	CTRYAG	1 cut(s)	1014
SgrAI	CRCCGGYG	1 cut(s)	1178
SmiMI	CAYNNNNRTG	3 cut(s)	179, 1016, 1057
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	8 cut(s)	68, 233, 325, 342, 384, 422, 857, 892
SsiI	CCGC	2 cut(s)	62, 828
SspMI	CTAG	1 cut(s)	1128
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	583, 1100
TaaI	ACNGT	3 cut(s)	208, 853, 1233
TaqI	TCGA	3 cut(s)	388, 395, 1005
TasI	AATT	8 cut(s)	68, 233, 325, 342, 384, 422, 857, 892
TatI	WGTACW	1 cut(s)	1075
TfiI	GAWTC	3 cut(s)	123, 184, 1007
Tru1I	TTAA	5 cut(s)	453, 627, 786, 891, 939
Tru9I	TTAA	5 cut(s)	453, 627, 786, 891, 939
TscAI	CASTG	4 cut(s)	196, 710, 858, 1041
TseFI	GTSAC	2 cut(s)	513, 607
TseI	GCWGC	3 cut(s)	32, 1064, 1206
Tsp45I	GTSAC	2 cut(s)	513, 607
TspDTI	ATGAA	4 cut(s)	461, 519, 736, 1095
TspGWI	ACGGA	3 cut(s)	30, 607, 894
TspRI	CASTG	4 cut(s)	196, 710, 858, 1041
XceI	RCATGY	1 cut(s)	1056
XmiI	GTMKAC	2 cut(s)	267, 395
XspI	CTAG	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.