Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004455

Physical Location & Seq

Genomic Coordinates Reverse (-)

32177980 .. 32180701

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGAGACTTTAACATCATTACTAGCCTTGATGAAAAGCTTGGTGGAGGCCAAGTAGTCACAAATTATATGCTCAATTTCTGTGATTTTTTAAACAATGAAAACCTTTTCTCTTTGAGAGCCTCTGGACTCCCATATACTTGGACAAATAAACACGAAGATGATTCTCTTATTTTTGAGAGATTGGATAGGGCTTGTGTCAACACAAGCCTTCTCAATGACTGTCCAGATATCAAATTGGAAAACCTTCCAATTATTGGGTCTGATCATGGGCCTATTTGTCTAACACTCAATAACATAAAGAAAAAGAAAAACAAATCCTTTAAATTTGAAGCCATTTGGCTCTCACATAAGGAGTTTAAACCTTTGGTCGAACATATTTGGAACCAAAGTCTTAATACTAACCATTTATTGAATTTTGTCACCATTGCAGGTCAATTCTCTAGCCAGGCACAAAACTGGAACAAAAATGTCTATGGAAACCTCTTCAGGAAGTTGGAGGATCTAAATGAAAGAAGTAGTCTTATCCAACAACAGTTAATGATGTCACCTATGTCTAACTACTTGCAAGTGCAGGATCTGCAAGTCAGAGAGGAACTTCTGGTACTCTATAAAGACGAGGAACTGTTTTGGGCTCAAAAGGCTAAAGCTAACTGGCTCAAATTGGGAGACAGGAACACTAGTTTCTTCCAAGCTCAGGCCAATATTAGGAAGAAATCTAACCTGATAACAAGAATTCAAGATAGCTCTGTAAATTGGGCTACTGCAGATCATGACATTGCGGATATTTTAATCCAAGATTTTAAAAAGAGATTCCATCTTGATAATGCTCCTAATAAGGATTCTTTAAATGATTTTATTTGCATTATAGAGCCATGCATTAATCATTCTGACAATGAGCTTTTGAATAAACAGGTCACAGATGAGGAAATCCTAGAAGCTGTTAAAGCTATTGGACCTCTTAAAGCACTCGATCCAGATGGGTTGCATGCCTCCTTCTATCAAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin

Protein Analysis

337

Amino Acids

38.79

Weight (kDa)

5.52

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150
fragaria_vesca	FvH4_4g18570
prunus_persica	Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1
pyrus_communis	pycom16g14000 pycom16g14010
rosa_chinensis	RchiOBHm_Chr4g0423171
rosa_laevigata	RLG00000007579
rosa_multiflora	Rmu_sc0000744.1_g000001 Rmu_sc0008829.1_g000002 Rmu_sc0020601.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365330
rosa_rugosa	Rorug04G0184800 Rorug04G0184900
rosa_samantha	Rh4AG244300 Rh4AG244400 Rh4BG249500 Rh4BG249600 Rh4CG258600 Rh4CG258700 Rh4DG244300 Rh4DG244400
rosa_wichuraiana	Rw4G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	1 cut(s)	782
AclWI	GGATC	3 cut(s)	510, 585, 968
AcsI	RAATTY	3 cut(s)	326, 415, 735
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	3 cut(s)	257, 697, 708
AgsI	TTSAA	4 cut(s)	332, 415, 740, 907
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	7 cut(s)	40, 650, 695, 747, 901, 941, 950
AluI	AGCT	7 cut(s)	40, 650, 695, 747, 901, 941, 950
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	3 cut(s)	510, 585, 968
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	3 cut(s)	49, 272, 699
ApoI	RAATTY	3 cut(s)	326, 415, 735
AseI	ATTAAT	1 cut(s)	882
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	272, 956
AsuHPI	GGTGA	2 cut(s)	415, 540
AvaII	GGWCC	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	637
BccI	CCATC	2 cut(s)	825, 974
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	663
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	5 cut(s)	24, 444, 681, 935, 1012
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	2 cut(s)	272, 956
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 697, 708
Bse1I	ACTGG	2 cut(s)	464, 659
Bse3DI	GCAATG	2 cut(s)	426, 777
BseBI	CCWGG	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	257, 697, 708
BseMI	GCAATG	2 cut(s)	426, 777
BseMII	CTCAG	1 cut(s)	710
BseNI	ACTGG	2 cut(s)	464, 659
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	3 cut(s)	51, 274, 701
BslI	CCNNNNNNNGG	3 cut(s)	257, 697, 708
BsmAI	GTCTC	1 cut(s)	663
BsnI	GGCC	3 cut(s)	51, 274, 701
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	265, 502, 577, 769, 973
BspACI	CCGC	1 cut(s)	782
BspANI	GGCC	3 cut(s)	51, 274, 701
BspCNI	CTCAG	1 cut(s)	709
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	510, 585, 968
BsrDI	GCAATG	2 cut(s)	426, 777
BsrI	ACTGG	2 cut(s)	464, 659
BssMI	GATC	5 cut(s)	265, 502, 577, 769, 973
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	224, 537, 627
Bst6I	CTCTTC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	990
BstDEI	CTNAG	1 cut(s)	696
BstKTI	GATC	5 cut(s)	268, 505, 580, 772, 976
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	5 cut(s)	265, 502, 577, 769, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	580, 641, 947
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	992
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	765
BstX2I	RGATCY	2 cut(s)	502, 577
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	2 cut(s)	502, 577
BsuRI	GGCC	3 cut(s)	51, 274, 701
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	990
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	772
Cfr13I	GGNCC	2 cut(s)	272, 956
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	4 cut(s)	269, 773, 876, 989
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	5 cut(s)	267, 504, 579, 771, 975
DpnII	GATC	5 cut(s)	265, 502, 577, 769, 973
DraI	TTTAAA	5 cut(s)	93, 325, 361, 805, 849
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	1 cut(s)	472
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	881
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	4 cut(s)	272, 776, 879, 992
FatI	CATG	4 cut(s)	268, 772, 875, 988
FbaI	TGATCA	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	637
FspBI	CTAG	5 cut(s)	24, 444, 681, 935, 1012
HaeIII	GGCC	3 cut(s)	51, 274, 701
Hin1II	CATG	4 cut(s)	272, 776, 879, 992
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	129, 164, 813, 842
HphI	GGTGA	2 cut(s)	415, 540
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	265, 590, 892
Hpy188III	TCNNGA	7 cut(s)	126, 227, 490, 740, 773, 821, 977
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	221, 257, 1006
HpyCH4III	ACNGT	3 cut(s)	224, 537, 627
HpyCH4V	TGCA	8 cut(s)	431, 568, 574, 583, 767, 864, 879, 988
HpyF10VI	GCNNNNNNNGC	3 cut(s)	580, 641, 947
HpyF3I	CTNAG	1 cut(s)	696
Hsp92II	CATG	4 cut(s)	272, 776, 879, 992
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	265, 502, 577, 769, 973
LmnI	GCTCC	1 cut(s)	835
MaeI	CTAG	5 cut(s)	24, 444, 681, 935, 1012
MaeIII	GTNAC	4 cut(s)	58, 421, 546, 916
MalI	GATC	5 cut(s)	267, 504, 579, 771, 975
MboI	GATC	5 cut(s)	265, 502, 577, 769, 973
MboII	GAAGA	4 cut(s)	170, 478, 679, 724
MflI	RGATCY	2 cut(s)	502, 577
MhlI	GDGCHC	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	477, 553
MnlI	CCTC	9 cut(s)	41, 133, 493, 494, 586, 613, 919, 969, 1003
Mph1103I	ATGCAT	1 cut(s)	881
MroXI	GAANNNNTTC	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	449
MssI	GTTTAAAC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	580, 641, 947
NdeII	GATC	5 cut(s)	265, 502, 577, 769, 973
NlaIII	CATG	4 cut(s)	272, 776, 879, 992
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	4 cut(s)	58, 421, 546, 916
NsiI	ATGCAT	1 cut(s)	881
NspI	RCATGY	1 cut(s)	992
PaeI	GCATGC	1 cut(s)	992
PagI	TCATGA	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	164, 813, 842
PflMI	CCANNNNNTGG	1 cut(s)	257
PleI	GAGTC	1 cut(s)	123
PmeI	GTTTAAAC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	272, 956
PsrI	GAACNNNNNNTAC	2 cut(s)	588, 620
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	502, 577
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	159
Sau3AI	GATC	5 cut(s)	265, 502, 577, 769, 973
Sau96I	GGNCC	2 cut(s)	272, 956
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	680
SphI	GCATGC	1 cut(s)	992
SsiI	CCGC	1 cut(s)	782
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	5 cut(s)	24, 444, 681, 935, 1012
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	224, 537, 627
TaqI	TCGA	2 cut(s)	372, 972
TfiI	GAWTC	3 cut(s)	164, 813, 842
TseFI	GTSAC	4 cut(s)	58, 421, 546, 916
Tsp45I	GTSAC	4 cut(s)	58, 421, 546, 916
TspDTI	ATGAA	3 cut(s)	48, 114, 525
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	956
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	3 cut(s)	326, 415, 735
XceI	RCATGY	1 cut(s)	992
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	5 cut(s)	24, 444, 681, 935, 1012
Zsp2I	ATGCAT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.