Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004455

Physical Location & Seq

Genomic Coordinates Reverse (-)

18498079 .. 18502824

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGAAATCTTTATATACCAGGAAGATCAATATGGTAACCTTGTTCCAGGACTATACGAATTTGATGCTGAAGTTGTTGAGACAGAGACGAATTTGTCAATACCTGTTCCAGATTTGCACTTTGAAGAAGTGGCGGCTGGAATGCAGCTGTTTTCTTTTACTAATCTGGAACCAGGCAACTTTTTGCTGACTATATCAGATATGAAGCATGATAAAAGCATCTCTAATATGCCATATGCTTATACCGTCTTTGTTGGCTATTGCAATGGGACAAAAAGTGTTGTTAATGGAACTGGTTTAAATAGCTCCGTGGCAGGAGAAAGATCAGAATTCTCAGTTTATTTGAATGATGCTTATCAAAATCCCTCTCCAGTTGAAATCGAAAGGCTTGAAATACAAATTGTAAGGGAAATTGACTCCTATCATGTGCAGTCGAGCATATTTCCTATCCAGATCATCAATGGGAGTGGACCTGCTCAAGGAATAAGATATGGTACAACCAGCCAAATAGAATTTGCTCCTTCACCATCTATGACCTTGACAAATTCTACTGTCGGGAGCTTCAGCACTCTGGCAACTGCTCTCAATGTGGTATATACACCTGACAAGAGTGGGATGTATAAAATTTATGTGTTTTGTGGAAATATTTTGCTGAATGGAGGCCGTCCCTTTAATAAGGAAATTATAGCAGGGAGTGTTGATCCATCATGCTCAACAGTTGTCAAATTTTCTCCCAAGGTGCCAAGGACGATTAATAATGAAGTAGTAGTGAAGCTCGGGGATTCATTTTTCAATCCCGTCTTGTCACAACAATCTGGGCTGAAACTAGAGATTGTTTCTGTAAACAGTTCTGGCTTTTCAAGTTCCTTGTTTGTGGACAACAATGATGGGTCATACAGTGTACACTATCTGGCTAAGGAGGTTGGAACTTATGAGATGTGTGCTTCATTTGATGGCAAACGTATTTCTGCCTGCCCCTTTGGGGTCAATGTCTACAGTAGCGAATATTTTCCCAGAGCCGAAAATGATACAATTTCTGTGTGGGAGGATGAGTCAATTGCTTTTGATGTTTTGGCCAATGACTACTTTGCTGGAAATAATGCTAGTGTTGTTGAGTTCTCCAAGCCAGGTCATGGTTCCCTTATTGAGTATGGAAGGCTCCTCCGGTATACGCCTTATAAAGACTATTATGGAAATGATTCCTTTGTGTACACAATGTCTGATATAAACGGCAATCTTGCTACTGCTTTTGTAAACATATCTGTTCTCACCATCCCACCACAATTTGTTTCTTTTCCAAGTGAATTGCAAGCTACTGAAGATGAGATTAATCCAAAATTTGGTGGTTTCTCTGGGTTTATGATAAGATATTCCGACATGATGGAGAACATCTCTGTTAATCTTAGTGCGCAATCTGGGACAGTATTTCTGTCTCCGATGCTAATGCAATTCTGGGAGCCCATTTGGAATGGACTTTCTGTGTACAAAGAGGATGGAGGAGTGAAGGGGTTGATATTACAAGGCAGTGTGGAAGTAATCAATGTTGCCCTTAAGTCAATACAGTACTATGGTAACGAGAACTTCTGTGGCTATGATACGATTCGGCTCACTACGAGGAATAGGAATGGAGTAAATGACTTGCATATTCCAGTTTTTGTGGAACCTATCAATGATCCTCCCTTTATTCATGCACCTGAGTTTATCATTCTGAAAAGTAATGAAGATGAGTCACTGATATATGACAGAGAAACAGACAAGTTTGAGTTCTATATTGGAGACCCAGATCTTCTTGCGTTCCCTGGTAATGAATCCCTTTTTTCGGTCATCTTTTCTATGGAAGTTAATGATGGATATTTGGCAACCAGCCTACCAGCTGAGCTCATCACTACAATAGAAGTGAAGACTAAGAATAGCTACCAGTGGCTACCACTTCAGACATATGTTACCATCTCAAAGCATTTCAAGGTCAAAGCTAAGGGAATCAGATTTTATGCAACAGTTAATGAATGCAATACTGCTATGCAACGGCTGTTTTATCATGGTGGAGGAGAGCAAGATGCCATTTTGACAGTGACATTGAATGACCTGGGAAACTATGGGTGTTATTGTAACTGTTCCGAAAAGATATCAGTGCCCTTACTTGCTGAGGCTTCTGTTAATCTAATAAGAAGAAGGCAGATGAGTTCGCTTGTGTCTCGTGGCATAGGATCAGCTATTGTCATTGAGTCCATTATAGTGTTTTCACTGGGAGCAGCACTAATGTTTTTCACATGCAAATGTGCAACTATCCTTGTAAATGAAAGAAGAAAGAGAGCTACCAGGACTCCAACTGACCCAGCAAGTGCACATAGTTTGGGCAAAGGAACTTCGAGTGAAAGTTTATCAGAGAATGCAACTCACCTTACCGCGTCTTGTTCAAGTCCCCTGCTCGGCAGCCAACGTCCCAACTTTAGACAACGGTCCTGCCGTCAATCTGGAAATGGGGAATCAAGCAAGGCAGCATGTAAGGCTACTGGTGAACGCATTCAGCAGAATCTTGCGCCTAGTTTTAAGCCCTTTTGTGTTGAGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin

Protein Analysis

859

Amino Acids

94.7

Weight (kDa)

4.95

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Filamin	PF00630	275 - 327	5.3e-06	Filamin/ABP280 repeat
Big_9	PF17963	338 - 420	1.6e-13	Bacterial Ig domain
Cadherin_5	PF17892	338 - 422	9e-06	Cadherin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150
fragaria_vesca	FvH4_4g18570
prunus_persica	Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1
pyrus_communis	pycom16g14000 pycom16g14010
rosa_chinensis	RchiOBHm_Chr4g0423171
rosa_laevigata	RLG00000007579
rosa_multiflora	Rmu_sc0000744.1_g000001 Rmu_sc0008829.1_g000002 Rmu_sc0020601.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365330
rosa_rugosa	Rorug04G0184800 Rorug04G0184900
rosa_samantha	Rh4AG244300 Rh4AG244400 Rh4BG249500 Rh4BG249600 Rh4CG258600 Rh4CG258700 Rh4DG244300 Rh4DG244400
rosa_wichuraiana	Rw4G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1179
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc16I	TGCGCA	1 cut(s)	1410
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	739
AccB7I	CCANNNNNTGG	2 cut(s)	1133, 1340
AccI	GTMKAC	2 cut(s)	993, 1169
AccII	CGCG	1 cut(s)	2408
AciI	CCGC	2 cut(s)	134, 2406
AclWI	GGATC	3 cut(s)	695, 1667, 2215
AcoI	YGGCCR	1 cut(s)	1074
AcsI	RAATTY	8 cut(s)	59, 91, 329, 512, 544, 624, 725, 1337
AcuI	CTGAAG	4 cut(s)	90, 547, 1338, 1916
AfaI	GTAC	5 cut(s)	496, 903, 1211, 1484, 1565
AfiI	CCNNNNNNNGG	6 cut(s)	479, 982, 1133, 1340, 1819, 2429
AflII	CTTAAG	1 cut(s)	1550
AgsI	TTSAA	9 cut(s)	125, 346, 377, 392, 793, 861, 1963, 2080, 2418
AjnI	CCWGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
Alw21I	GWGCWC	2 cut(s)	1881, 2347
Alw26I	GTCTC	5 cut(s)	74, 80, 1437, 1770, 2199
Alw44I	GTGCAC	1 cut(s)	2343
AlwI	GGATC	3 cut(s)	695, 1667, 2215
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	661, 1074
ApaLI	GTGCAC	1 cut(s)	2343
ApeKI	GCWGC	4 cut(s)	145, 2252, 2433, 2498
ApoI	RAATTY	8 cut(s)	59, 91, 329, 512, 544, 624, 725, 1337
AseI	ATTAAT	2 cut(s)	753, 1329
Asp700I	GAANNNNTTC	3 cut(s)	1008, 1198, 2523
AspLEI	GCGC	2 cut(s)	1411, 2542
AspS9I	GGNCC	2 cut(s)	470, 2460
AsuHPI	GGTGA	4 cut(s)	516, 1261, 2390, 2528
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	470, 2460
BaeGI	GKGCMC	2 cut(s)	2136, 2347
BalI	TGGCCA	1 cut(s)	1076
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	2 cut(s)	1461, 1881
BauI	CACGAG	1 cut(s)	2196
BbsI	GAAGAC	1 cut(s)	1907
Bbv12I	GWGCWC	2 cut(s)	1881, 2347
BbvCI	CCTCAGC	1 cut(s)	2145
BbvI	GCAGC	4 cut(s)	157, 2264, 2445, 2510
BccI	CCATC	9 cut(s)	535, 712, 881, 947, 1280, 1375, 1487, 1841, 1955
BceAI	ACGGC	4 cut(s)	648, 1246, 2042, 2451
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 1426, 1460
BciT130I	CCWGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
BcoDI	GTCTC	5 cut(s)	74, 80, 1437, 1770, 2199
BfaI	CTAG	3 cut(s)	827, 1104, 2544
BfmI	CTRYAG	1 cut(s)	994
BfrI	CTTAAG	1 cut(s)	1550
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	1783
BisI	GCNGC	5 cut(s)	135, 146, 2253, 2434, 2499
BlpI	GCTNAGC	1 cut(s)	1875
BlsI	GCNGC	5 cut(s)	136, 147, 2254, 2435, 2500
BmcAI	AGTACT	1 cut(s)	1565
Bme1390I	CCNGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
Bme18I	GGWCC	2 cut(s)	470, 2460
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	2 cut(s)	470, 2460
BmiI	GGNNCC	6 cut(s)	171, 741, 1138, 1160, 1458, 1662
BmrFI	CCNGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
BmrI	ACTGGG	1 cut(s)	2255
BmsI	GCATC	5 cut(s)	55, 228, 340, 1428, 2047
BmuI	ACTGGG	1 cut(s)	2255
BoxI	GACNNNNGTC	1 cut(s)	2458
BpiI	GAAGAC	1 cut(s)	1907
BplI	GAGNNNNNCTC	2 cut(s)	1376, 1408
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	3 cut(s)	915, 1974, 2145
Bpu1102I	GCTNAGC	1 cut(s)	1875
BpuEI	CTTGAG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	1770
BsaJI	CCNNGG	5 cut(s)	309, 735, 743, 1798, 2086
BsaWI	WCCGGW	1 cut(s)	1164
BsaXI	ACNNNNNCTCC	4 cut(s)	1037, 1067, 2308, 2338
Bsc4I	CCNNNNNNNGG	6 cut(s)	479, 982, 1133, 1340, 1819, 2429
Bse1I	ACTGG	6 cut(s)	298, 371, 1649, 1918, 2250, 2518
Bse3DI	GCAATG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
BseDI	CCNNGG	5 cut(s)	309, 735, 743, 1798, 2086
BseGI	GGATG	4 cut(s)	621, 1054, 1272, 1498
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	6 cut(s)	479, 982, 1133, 1340, 1819, 2429
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	4 cut(s)	348, 1686, 1866, 2136
BseNI	ACTGG	6 cut(s)	298, 371, 1649, 1918, 2250, 2518
BseRI	GAGGAG	3 cut(s)	1151, 1512, 2061
BseSI	GKGCMC	2 cut(s)	2136, 2347
BseXI	GCAGC	4 cut(s)	157, 2264, 2445, 2510
BseYI	CCCAGC	1 cut(s)	2335
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	2408
BshFI	GGCC	2 cut(s)	663, 1076
BshNI	GGYRCC	1 cut(s)	739
BsiHKAI	GWGCWC	2 cut(s)	1881, 2347
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	1165
BslFI	GGGAC	5 cut(s)	283, 651, 1432, 2406, 2427
BslI	CCNNNNNNNGG	6 cut(s)	479, 982, 1133, 1340, 1819, 2429
BsmAI	GTCTC	5 cut(s)	74, 80, 1437, 1770, 2199
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	5 cut(s)	283, 651, 1432, 2406, 2427
BsmI	GAATGC	4 cut(s)	147, 2012, 2395, 2523
BsnI	GGCC	2 cut(s)	663, 1076
Bso31I	GGTCTC	1 cut(s)	1770
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	4 cut(s)	1461, 1881, 2136, 2347
Bsp1407I	TGTACA	3 cut(s)	901, 1209, 1482
Bsp143I	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
Bsp1720I	GCTNAGC	1 cut(s)	1875
BspACI	CCGC	2 cut(s)	134, 2406
BspANI	GGCC	2 cut(s)	663, 1076
BspCNI	CTCAG	4 cut(s)	347, 1687, 1867, 2137
BspFNI	CGCG	1 cut(s)	2408
BspLI	GGNNCC	6 cut(s)	171, 741, 1138, 1160, 1458, 1662
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	3 cut(s)	695, 1667, 2215
BspT107I	GGYRCC	1 cut(s)	739
BspTI	CTTAAG	1 cut(s)	1550
BspTNI	GGTCTC	1 cut(s)	1770
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	3 cut(s)	901, 1209, 1482
BsrI	ACTGG	6 cut(s)	298, 371, 1649, 1918, 2250, 2518
BssECI	CCNNGG	5 cut(s)	309, 735, 743, 1798, 2086
BssMI	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
BssNAI	GTATAC	1 cut(s)	1170
BssSI	CACGAG	1 cut(s)	2196
BssT1I	CCWWGG	2 cut(s)	735, 743
Bst1107I	GTATAC	1 cut(s)	1170
Bst2BI	CACGAG	1 cut(s)	2196
Bst2UI	CCWGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
BstAFI	CTTAAG	1 cut(s)	1550
BstAUI	TGTACA	3 cut(s)	901, 1209, 1482
BstC8I	GCNNGC	2 cut(s)	973, 1311
BstDEI	CTNAG	8 cut(s)	334, 915, 1403, 1695, 1875, 1905, 1974, 2145
BstDSI	CCRYGG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	4 cut(s)	621, 1054, 1272, 1498
BstFNI	CGCG	1 cut(s)	2408
BstHHI	GCGC	2 cut(s)	1411, 2542
BstKTI	GATC	7 cut(s)	28, 326, 456, 703, 1675, 1786, 2210
BstMAI	GTCTC	5 cut(s)	74, 80, 1437, 1770, 2199
BstMBI	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
BstMWI	GCNNNNNNNGC	1 cut(s)	2507
BstNI	CCWGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
BstNSI	RCATGY	2 cut(s)	2274, 2505
BstPAI	GACNNNNGTC	1 cut(s)	2458
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
BstSFI	CTRYAG	1 cut(s)	994
BstSLI	GKGCMC	2 cut(s)	2136, 2347
BstUI	CGCG	1 cut(s)	2408
BstV1I	GCAGC	4 cut(s)	157, 2264, 2445, 2510
BstV2I	GAAGAC	1 cut(s)	1907
BstX2I	RGATCY	1 cut(s)	1783
BstYI	RGATCY	1 cut(s)	1783
BstZ17I	GTATAC	1 cut(s)	1170
BsuRI	GGCC	2 cut(s)	663, 1076
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	621, 1054, 1272, 1498
BtsI	GCAGTG	1 cut(s)	1531
BtsIMutI	CAGTG	7 cut(s)	904, 1531, 1730, 1925, 2076, 2136, 2243
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	973, 1311
CfoI	GCGC	2 cut(s)	1411, 2542
Cfr13I	GGNCC	2 cut(s)	470, 2460
CseI	GACGC	1 cut(s)	2397
Csp6I	GTAC	5 cut(s)	495, 902, 1210, 1483, 1564
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	9 cut(s)	209, 425, 708, 1133, 1378, 1688, 2039, 2271, 2502
CviQI	GTAC	5 cut(s)	495, 902, 1210, 1483, 1564
DdeI	CTNAG	8 cut(s)	334, 915, 1403, 1695, 1875, 1905, 1974, 2145
DpnI	GATC	7 cut(s)	27, 325, 455, 702, 1674, 1785, 2209
DpnII	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
DraI	TTTAAA	1 cut(s)	300
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	1074
Ecl136II	GAGCTC	1 cut(s)	1879
Eco130I	CCWWGG	2 cut(s)	735, 743
Eco24I	GRGCYC	2 cut(s)	1461, 1881
Eco31I	GGTCTC	1 cut(s)	1770
Eco32I	GATATC	1 cut(s)	2127
Eco47I	GGWCC	2 cut(s)	470, 2460
Eco53kI	GAGCTC	1 cut(s)	1879
Eco57I	CTGAAG	4 cut(s)	90, 547, 1338, 1916
Eco88I	CYCGRG	1 cut(s)	776
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	1879
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
EcoRV	GATATC	1 cut(s)	2127
EcoT14I	CCWWGG	2 cut(s)	735, 743
EcoT38I	GRGCYC	2 cut(s)	1461, 1881
ErhI	CCWWGG	2 cut(s)	735, 743
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	9 cut(s)	212, 428, 711, 1136, 1381, 1691, 2042, 2274, 2505
FaqI	GGGAC	5 cut(s)	283, 651, 1432, 2406, 2427
FatI	CATG	9 cut(s)	208, 424, 707, 1132, 1377, 1687, 2038, 2270, 2501
FauNDI	CATATG	2 cut(s)	235, 1939
FblI	GTMKAC	2 cut(s)	993, 1169
Fnu4HI	GCNGC	5 cut(s)	135, 146, 2253, 2434, 2499
FokI	GGATG	4 cut(s)	628, 1061, 1259, 1505
FriOI	GRGCYC	2 cut(s)	1461, 1881
Fsp4HI	GCNGC	5 cut(s)	135, 146, 2253, 2434, 2499
FspBI	CTAG	3 cut(s)	827, 1104, 2544
FspI	TGCGCA	1 cut(s)	1410
GlaI	GCGC	2 cut(s)	1410, 2541
GluI	GCNGC	5 cut(s)	135, 146, 2253, 2434, 2499
GsaI	CCCAGC	1 cut(s)	2339
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	663, 1076
HapII	CCGG	1 cut(s)	1165
HgaI	GACGC	1 cut(s)	2397
HhaI	GCGC	2 cut(s)	1411, 2542
Hin1II	CATG	9 cut(s)	212, 428, 711, 1136, 1381, 1691, 2042, 2274, 2505
Hin6I	GCGC	2 cut(s)	1409, 2540
HinP1I	GCGC	2 cut(s)	1409, 2540
HpaII	CCGG	1 cut(s)	1165
HphI	GGTGA	4 cut(s)	516, 1261, 2390, 2528
Hpy188III	TCNNGA	5 cut(s)	110, 167, 451, 556, 2475
HpyAV	CCTTC	5 cut(s)	531, 1149, 1498, 2166, 2563
HpyCH4IV	ACGT	2 cut(s)	961, 2440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2507
HpyF3I	CTNAG	8 cut(s)	334, 915, 1403, 1695, 1875, 1905, 1974, 2145
HpySE526I	ACGT	2 cut(s)	961, 2440
Hsp92II	CATG	9 cut(s)	212, 428, 711, 1136, 1381, 1691, 2042, 2274, 2505
HspAI	GCGC	2 cut(s)	1409, 2540
Kzo9I	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
LmnI	GCTCC	6 cut(s)	311, 523, 558, 1164, 1456, 2249
Lsp1109I	GCAGC	4 cut(s)	157, 2264, 2445, 2510
LweI	GCATC	5 cut(s)	55, 228, 340, 1428, 2047
MaeI	CTAG	3 cut(s)	827, 1104, 2544
MaeII	ACGT	2 cut(s)	961, 2440
MaeIII	GTNAC	7 cut(s)	35, 804, 1571, 1728, 1942, 2071, 2108
MalI	GATC	7 cut(s)	27, 325, 455, 702, 1674, 1785, 2209
MboI	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
MboII	GAAGA	8 cut(s)	35, 137, 1331, 1733, 1778, 1912, 2181, 2316
MfeI	CAATTG	1 cut(s)	1056
MflI	RGATCY	1 cut(s)	1783
MhlI	GDGCHC	4 cut(s)	1461, 1881, 2136, 2347
MlsI	TGGCCA	1 cut(s)	1076
MluNI	TGGCCA	1 cut(s)	1076
MlyI	GAGTC	5 cut(s)	410, 1061, 1736, 2234, 2317
MmeI	TCCRAC	3 cut(s)	904, 1398, 2351
Mox20I	TGGCCA	1 cut(s)	1076
MroXI	GAANNNNTTC	3 cut(s)	1008, 1198, 2523
MscI	TGGCCA	1 cut(s)	1076
MslI	CAYNNNNRTG	2 cut(s)	2234, 2275
Msp20I	TGGCCA	1 cut(s)	1076
MspA1I	CMGCKG	2 cut(s)	148, 1874
MspCI	CTTAAG	1 cut(s)	1550
MspI	CCGG	1 cut(s)	1165
MspR9I	CCNGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
MunI	CAATTG	1 cut(s)	1056
Mva1269I	GAATGC	4 cut(s)	147, 2012, 2395, 2523
MvaI	CCWGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
MvnI	CGCG	1 cut(s)	2408
MwoI	GCNNNNNNNGC	1 cut(s)	2507
NdeI	CATATG	2 cut(s)	235, 1939
NdeII	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
NlaIII	CATG	9 cut(s)	212, 428, 711, 1136, 1381, 1691, 2042, 2274, 2505
NlaIV	GGNNCC	6 cut(s)	171, 741, 1138, 1160, 1458, 1662
NmeAIII	GCCGAG	1 cut(s)	2409
NmuCI	GTSAC	3 cut(s)	804, 1728, 2071
NsbI	TGCGCA	1 cut(s)	1410
NspI	RCATGY	2 cut(s)	2274, 2505
PcsI	WCGNNNNNNNCGW	1 cut(s)	2464
PctI	GAATGC	4 cut(s)	147, 2012, 2395, 2523
PdmI	GAANNNNTTC	3 cut(s)	1008, 1198, 2523
PfeI	GAWTC	7 cut(s)	782, 1199, 1600, 1808, 1980, 2486, 2533
PflMI	CCANNNNNTGG	2 cut(s)	1133, 1340
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	136, 147, 2254, 2435, 2500
PleI	GAGTC	5 cut(s)	410, 1060, 1735, 2233, 2317
PpsI	GAGTC	5 cut(s)	410, 1060, 1735, 2233, 2317
PshAI	GACNNNNGTC	1 cut(s)	2458
PshBI	ATTAAT	2 cut(s)	753, 1329
PsiI	TTATAA	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	1881
Psp6I	CCWGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	2335
PspGI	CCWGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
PspN4I	GGNNCC	6 cut(s)	171, 741, 1138, 1160, 1458, 1662
PspPI	GGNCC	2 cut(s)	470, 2460
PsuI	RGATCY	1 cut(s)	1783
PvuII	CAGCTG	2 cut(s)	148, 1874
RsaI	GTAC	5 cut(s)	496, 903, 1211, 1484, 1565
RsaNI	GTAC	5 cut(s)	495, 902, 1210, 1483, 1564
RseI	CAYNNNNRTG	2 cut(s)	2234, 2275
SacI	GAGCTC	1 cut(s)	1881
SatI	GCNGC	5 cut(s)	135, 146, 2253, 2434, 2499
Sau3AI	GATC	7 cut(s)	25, 323, 453, 700, 1672, 1783, 2207
Sau96I	GGNCC	2 cut(s)	470, 2460
ScaI	AGTACT	1 cut(s)	1565
SchI	GAGTC	5 cut(s)	410, 1061, 1736, 2234, 2317
ScrFI	CCNGG	7 cut(s)	20, 48, 174, 1128, 1800, 2087, 2320
SduI	GDGCHC	4 cut(s)	1461, 1881, 2136, 2347
SfaNI	GCATC	5 cut(s)	55, 228, 340, 1428, 2047
SfcI	CTRYAG	1 cut(s)	994
SinI	GGWCC	2 cut(s)	470, 2460
SmiMI	CAYNNNNRTG	2 cut(s)	2234, 2275
SmlI	CTYRAG	2 cut(s)	477, 1550
SmoI	CTYRAG	2 cut(s)	477, 1550
SsiI	CCGC	2 cut(s)	134, 2406
SspI	AATATT	2 cut(s)	646, 1007
SspMI	CTAG	3 cut(s)	827, 1104, 2544
SstI	GAGCTC	1 cut(s)	1881
StyD4I	CCNGG	7 cut(s)	18, 46, 172, 1126, 1798, 2085, 2318
StyI	CCWWGG	2 cut(s)	735, 743
TaiI	ACGT	2 cut(s)	964, 2443
TaqI	TCGA	3 cut(s)	381, 434, 2369
TaqII	GACCGA	1 cut(s)	1810
TatI	WGTACW	4 cut(s)	901, 1209, 1482, 1563
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	7 cut(s)	782, 1199, 1600, 1808, 1980, 2486, 2533
TscAI	CASTG	7 cut(s)	904, 1531, 1737, 1925, 2076, 2136, 2250
TseFI	GTSAC	3 cut(s)	804, 1728, 2071
TseI	GCWGC	4 cut(s)	145, 2252, 2433, 2498
Tsp45I	GTSAC	3 cut(s)	804, 1728, 2071
TspDTI	ATGAA	9 cut(s)	218, 774, 774, 936, 1676, 1734, 1821, 2019, 2313
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	7 cut(s)	904, 1531, 1737, 1925, 2076, 2136, 2250
Van91I	CCANNNNNTGG	2 cut(s)	1133, 1340
Vha464I	CTTAAG	1 cut(s)	1550
VneI	GTGCAC	1 cut(s)	2343
VpaK11BI	GGWCC	2 cut(s)	470, 2460
VspI	ATTAAT	2 cut(s)	753, 1329
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	8 cut(s)	59, 91, 329, 512, 544, 624, 725, 1337
XceI	RCATGY	2 cut(s)	2274, 2505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	993, 1169
XmnI	GAANNNNTTC	3 cut(s)	1008, 1198, 2523
XspI	CTAG	3 cut(s)	827, 1104, 2544
ZrmI	AGTACT	1 cut(s)	1565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.